Characterization of Rice Blast Isolates by the Differential System and their Application for Mapping a Resistance Gene, Pi19(t)

Journal of Phytopathology

Volumn 159, Issue 2, 2011, Pages 85-93

  Koide, Yohei ^a,b   Telebanco Yanoria, Mary Jeanie ^a   Dela Peña, Fe ^c   Fukuta, Yoshimichi ^b   Kobayashi, Nobuya ^a,b  

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^b JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

^c PHILIPPINE RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

Differential system; Magnaporthe oryzae B. Couch; Oryza sativa L.; Resistance gene

Indexed keywords

ALLELE; CHROMOSOME; GENETIC MARKER; PADDY FIELD; PATHOGENICITY; RICE;

PHILIPPINES;

MAGNAPORTHE; MAGNAPORTHE ORYZAE; ORYZA SATIVA;

EID: 78650896363     PISSN: 09311785     EISSN: 14390434     Source Type: Journal    
DOI: 10.1111/j.1439-0434.2010.01721.x     Document Type: Article

References (47)

1. Ahn SN, Kim YK, Han SS, Choi HC, Moon HP, McCouch SR. (1996) Molecular mapping of a gene for resistance to a Korean isolate of rice blast. Rice Genet Newsl 13:74.
2. Amante-Bordeos A, Sitch LA, Nelson R, Dalmacio RD, Oliva NP, Aswidinnoor H, Leung N. (1992) Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa. Theor Appl Genet 84:345-354.
3. Atkins AT, Robert AL, Adair CR, Goto K, Kozaka T, Yanagida R, Yamada M, Matsumoto S. (1967) An international set of rice varieties for differentiating races of Pyricularia oryzae. Phytopathology 57:297-301.
4. Ballini E, Morel JB, Droc G, Price A, Courtois B, Notteghem JL, Tharreau D. (2008) A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Mol Plant Microbe Interact 21:859-868.
5. Bonman JM, Mackill DJ. (1988) Durable resistance to rice blast disease. Oryza 25:103-110.
6. Bryan GT, Wu KS, Farrall L, Jia Y, Hershey HP, McAdams SA, Faulk KN, Donaldson GK, Tarchini R, Valent B. (2000) A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Plant Cell 12:2033-2045.
7. Causse MA, Fulton TM, Cho YG et al. (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138:1251-1274.
8. Cho YC, Kwon SW, Choi IS, Lee SK, Jeon JS, Oh MG, Roh JH, Hwang HG, Kim YG. (2007) Identification of major blast resistance genes in Korean rice varieties (Oryza sativa L.) using molecular markers. J Crop Sci Biotech 10:265-276.
9. Couch BC, Kohn LM. (2002) A multilocus gene genealogy concordant with the host preference indicates segregation of a new species, Magnaporthe oryzae, from Magnaporthe grisea. Mycologia 94:683-693.
10. Ebron LA, Fukuta Y, Imbe T, Kato H, T-Yanoria JM, Tsunematsu H, Khush GS, Yokoo M. (2004) Estimation of genes in blast resistance in elite Indica-type rice (Oryza sativa L.) varieties bred at the International Rice Research Institute. Breed Sci 54:381-387.
11. Flor HH. (1971) Current status of gene-for-gene concept. Adv Genet 8:29-54.
12. Gilmour J. (1973) Octal notation for designating physiologic races of plant pathogens. Nature 242:620.
13. Hayashi N, Fukuta Y (2009) Proposal for a new international system of differentiating races of blast (Pyricularia oryzae Cavara) by using LTH monogenic lines in rice (Oryza sativa L.). In: Fukuta Y, Vera Cruz CM, Kobayashi N (eds) Development and characterization of blast resistance using differential varieties in rice. JIRCAS working report No 63. Tsukuba, Ibaraki, Japan, Japan International Research Center for Agricultural Sciences, pp 11-15.
14. Hayashi N, Ando I, Imbe T. (1998) Identification of a new resistance gene to a Chinese blast fungus isolate in the Japanese rice cultivar Aichi Asahi. Phytopathology 88:822-827.
15. Hayashi K, Yoshida H, Ashikawa I. (2006) Development of PCR-based allele specific and InDel marker sets for nine rice blast resistance genes. Theor Appl Genet 113:251-260.
16. Hayashi N, Kobayashi N, Vera Cruz CM, Fukuta Y. (2009) Protocols for the sampling of diseased specimens and evaluation of blast disease in rice. In: Fukuta Y, Vera Cruz CM, Kobayashi N (eds) Development and characterization of blast resistance using differential varieties in rice. JIRCAS Working Report No 63. Tsukuba, Ibaraki, Japan, Japan International Research Center for Agricultural Sciences, pp 17-33.
17. Inukai T, Nelson RJ, Zeigler RS, Sarkarung S, Mackill DJ, Bonman JM, Takamure I, Kinoshita T. (1996) Genetic analysis of blast resistance in tropical rice cultivars using near-isogenic lines. In: Khush GS (ed) Rice genetics III. Proceeding of the Third International Rice Genetics Symposium. Manila, Philippines, International Rice Research Institute, pp 447-455.
18. Jia Y. (2009) Artificial introgression of a large chromosome fragment around the rice blast resistance gene Pi-ta in backcross progeny and several elite rice cultivars. Heredity 103:333-339.
19. Jia Y, Martin R. (2008) Identification of a new locus, Ptr(t), required for rice blast resistance gene Pi-ta-mediated resistance. Mol Plant Microbe Interact 21:396-403.
20. Kiyosawa S. (1984) Establishment of differential varieties for pathogenicity test of rice blast fungus. Rice Genet Newsl 1:95-96.
21. Kiyosawa S, Mackill DJ, Bonman JM, Tanaka Y, Ling Z. (1986) An attempt of classification of the world's rice varieties based on reaction pattern to blast fungus strains. Bull Natl Inst Agrobiol Resour 2:13-39.
22. Koide Y, Kobayashi N, Xu D, Fukuta Y. (2009) Resistance genes and selection DNA markers for blast disease in rice (Oryza sativa L.). JARQ 43:255-280.
23. Koizumi S. (2008) Durability of resistance to rice blast disease. In: Fukuta Y, Vera Cruz CM, Kobayashi N (eds) A differential system for blast resistance for stable rice production environment. JIRCAS working report No 53. Tsukuba, Ibaraki, Japan, Japan International Research Center for Agricultural Sciences, pp 1-10.
24. Latterell FM, Rossi AE. (1986) Longevity and pathogenic stability of Pyricularia oryzae. Phytopathology 76:132-235.
25. Lander ES, Green SP, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newbury L. (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181.
26. Ling KC, Ou SC. (1969) Standardization of the international race numbers of Pyricularia oryzae. Phytopathology 59:339-342.
27. Liu B, Zhang S, Zhu X, Yang Q, Wu S, Mei M, Mauleon R, Leach J, Mew T, Leung H. (2004) Candidate defense genes as predictors of quantitative blast resistance in Rice. Mol Plant Microbe Interact 17:1146-1152.
28. Liu X, Yang Q, Lin F, Hua L, Wang C, Wang L, Pan Q. (2007) Identification and fine mapping of Pi39(t), a major gene conferring the broad-spectrum resistance to Magnaporthe oryzae. Mol Gen Genomics 278:403-410.
29. Mackill DJ, Bonman JM. (1992) Inheritance of blast resistance in near-isogenic lines of rice. Phytopathology 82:746-749.
30. Monosi B, Wisser RJ, Pennill L, Hulbert SH. (2004) Full-genome analysis of resistance gene homologues in rice. Theor Appl Genet 109:1434-1447.
31. Murray MG, Thompson WF. (1980) Rapid isolation of high-molecular weight plant DNA. Nucleic Acids Res 8:4321-4325.
32. Naqvi NI, Chattoo BB (1996) Molecular genetic analysis and sequence characterized amplified region-assisted selection of blast resistance in rice. In: Khush GS (ed) Rice genetics III. Proceeding of the Third International Rice Genetics Symposium. Manila, Philippines, International Rice Research Institute, pp 570-576.
33. Ou SH (1985) Rice Diseases 1, 2nd edn. Kew, UK, Commonwealth Mycological Institute, 380 pp.
34. Padmanabhan SY, Chakrabarti NK, Mathur SC, Veeraraghavan J. (1970) Identification of pathogenic races of P. oryzae in India. Phytopathology 60:1574-1577.
35. Qu S, Liu G, Zhou B, Bellizzi M, Zeng L, Dai L, Han B, Wang GL. (2006) The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 172:1901-1914.
36. Sallaud C, Lorieux M, Roumen E, Tharreau D, Berruyer R, Svestasrani P, Garsmeur O, Ghesquiere A, Notteghem JL. (2003) Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy. Theor Appl Genet 106:794-803.
37. Silue D, Notteghem JL, Tharreau D. (1992) Evidence for a gene-for-gene relationship in the Oryza sativa-Magnaporthe grisea pathosystem. Phytopathology 82:577-580.
38. Skamnioti P, Gurr SJ. (2009) Against the grain: safeguarding rice from rice blast disease. Trends Biotechnol 27:141-150.
39. Tabien RE, Li Z, Paterson AH, Marchetti MA, Stansel JW, Pinson SRM. (2000) Mapping of four major rice blast resistance genes from 'Lemont' and 'Teqing' and evaluation of their combinatorial effect for field resistance. Theor Appl Genet 101:1215-1225.
40. Takehisa H, Yasuda M, Fukuta Y, Kobayashi N, Hayashi N, Nakashita H, Abe T, Sato T. (2009) Genetic analysis of resistance genes in an Indica-type rice (Oryza sativa L.), Kasalath, using DNA markers. Breed Sci 59:253-260.
41. Telebanco-Yanoria MJ, Imbe T, Kato H, Tsunematsu H, Ebron L, Vera-Cruz C, Kobayashi N, Fukuta Y. (2008a) A set of standard differential blast isolates (Magnaporthe grisea (Hebert) Barr.) from the Philippines for rice (Oryza sativa L.) resistance. JARQ 42:23-34.
42. Telebanco-Yanoria MJ, Osawa R, Senoo S, Kobayashi N, Fukuta Y. (2008b) Diversity analysis for resistance of rice (Oryza sativa L.) to blast disease [Magnaporthe grisea (Herbert) Barr.] using differential isolates from the Philippines. Plant Breed 127:355-363.
43. Tsunematsu H, Yanoria MJT, Ebron LA, Hayashi N, Ando I, Kato H, Imbe T, Khush GS. (2000) Development of monogenic lines for rice blast resistance. Breed Sci 50:229-234.
44. Yamada M, Kiyosawa S, Yamaguchi T, Hirano T, Kobayashi T, Kushibuchi K, Watanabe S. (1976) Proposal of a new method of differentiating races of Pyricularia oryzae Cavara in Japan. Ann Phytopathol Soc Jpn 42:216-219.
45. Yang Q, Lin F, Wang L, Pan Q. (2009) Identification and mapping of Pi41, a major gene conferring resistance to rice blast in the Oryza sativa subsp. indica reference cultivar, 93-11. Theor Appl Genet 118:1027-1034.
46. Zhou E, Jia Y, Correll J, Lee FN. (2007) Instability of the Magnaporthe oryzae avirulence gene AVR-Pita alters virulence. Fungal Genetics and Biology 44:1024-1034.
47. Zhuang JY, Wu JL, Fan YY, Rao ZM, Zheng KL. (2001) Genetic drag between a blast resistance gene and QTL conditioning yield trait detected in a recombinant inbred line population in rice. Rice Genet Newsl 18:69-70.