-
1
-
-
0033942874
-
Structure and function of bacterial outer membrane proteins: barrels in a nutshell
-
Koebnik R, Locher KP, Van Gelder P, (2000) Structure and function of bacterial outer membrane proteins: barrels in a nutshell. Mol Microbiol 37: 239-253.
-
(2000)
Mol Microbiol
, vol.37
, pp. 239-253
-
-
Koebnik, R.1
Locher, K.P.2
van Gelder, P.3
-
2
-
-
0036221733
-
Outer membrane proteins: key players for bacterial adaptation in host niches
-
Lin J, Huang S, Zhang Q, (2002) Outer membrane proteins: key players for bacterial adaptation in host niches. Microbes Infect 4: 325-331.
-
(2002)
Microbes Infect
, vol.4
, pp. 325-331
-
-
Lin, J.1
Huang, S.2
Zhang, Q.3
-
3
-
-
1842861589
-
Structural biology of bacterial pathogenesis
-
Remaut H, Waksman G, (2004) Structural biology of bacterial pathogenesis. Curr Opin Struct Biol 14: 161-170.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 161-170
-
-
Remaut, H.1
Waksman, G.2
-
4
-
-
23444456920
-
Prevention of drug access to bacterial targets: permeability barriers and active efflux
-
Nikaido H, (1994) Prevention of drug access to bacterial targets: permeability barriers and active efflux. Science 264: 382-388.
-
(1994)
Science
, vol.264
, pp. 382-388
-
-
Nikaido, H.1
-
5
-
-
0041428149
-
The versatile β-barrel membrane protein
-
Wimley WC, (2003) The versatile β-barrel membrane protein. Curr Opin Struct Biol 13: 404-411.
-
(2003)
Curr Opin Struct Biol
, vol.13
, pp. 404-411
-
-
Wimley, W.C.1
-
6
-
-
8844219773
-
Biogenesis of the gram-negative bacterial outer membrane
-
Bos MP, Tommassen J, (2004) Biogenesis of the gram-negative bacterial outer membrane. Curr Opin Microbiol 7: 610-616.
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 610-616
-
-
Bos, M.P.1
Tommassen, J.2
-
7
-
-
31344479308
-
Advances in understanding bacterial outer-membrane biogenesis
-
Ruiz N, Kahne D, Silhavy TJ, (2006) Advances in understanding bacterial outer-membrane biogenesis. Nat Rev Microbiol 4: 57-66.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 57-66
-
-
Ruiz, N.1
Kahne, D.2
Silhavy, T.J.3
-
8
-
-
35348906348
-
Biogenesis of the gram-negative bacterial outer membrane
-
Bos MP, Robert V, Tommassen J, (2007) Biogenesis of the gram-negative bacterial outer membrane. Annu Rev Microbiol 61: 191-214.
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 191-214
-
-
Bos, M.P.1
Robert, V.2
Tommassen, J.3
-
9
-
-
50649104037
-
Protein translocation across the bacterial cytoplasmic membrane
-
Driessen AJM, Nouwen N, (2008) Protein translocation across the bacterial cytoplasmic membrane. Annu Rev Biochem 77: 643-667.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 643-667
-
-
Driessen, A.J.M.1
Nouwen, N.2
-
10
-
-
60749102331
-
Membrane protein architects: the role of the BAM complex in outer membrane protein assembly
-
Knowles TJ, Scott-Tucker A, Overduin M, Henderson IR, (2009) Membrane protein architects: the role of the BAM complex in outer membrane protein assembly. Nat Rev Microbiol 7: 206-214.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 206-214
-
-
Knowles, T.J.1
Scott-Tucker, A.2
Overduin, M.3
Henderson, I.R.4
-
11
-
-
80052080449
-
The structural biology of β-barrel membrane proteins: a summary of recent reports
-
Fairman JW, Noinaj N, Buchanan SK, (2011) The structural biology of β-barrel membrane proteins: a summary of recent reports. Curr Opin Struct Biol 21: 1-9.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 1-9
-
-
Fairman, J.W.1
Noinaj, N.2
Buchanan, S.K.3
-
12
-
-
79959468179
-
β-barrel membrane protein assembly by the Bam complex
-
Hagan CL, Silhavy TJ, Kahne D, (2011) β-barrel membrane protein assembly by the Bam complex. Annu Rev Biochem 80: 189-210.
-
(2011)
Annu Rev Biochem
, vol.80
, pp. 189-210
-
-
Hagan, C.L.1
Silhavy, T.J.2
Kahne, D.3
-
14
-
-
0032411339
-
Evolution and mechanism of translation in chloroplasts
-
Sugiura M, Hirose T, Sugita M, (1998) Evolution and mechanism of translation in chloroplasts. Annu Rev Genet 32: 437-459.
-
(1998)
Annu Rev Genet
, vol.32
, pp. 437-459
-
-
Sugiura, M.1
Hirose, T.2
Sugita, M.3
-
15
-
-
27844456862
-
Membrane protein insertion: mixing eukaryotic and prokaryotic concepts
-
Schleiff E, Soll J, (2005) Membrane protein insertion: mixing eukaryotic and prokaryotic concepts. EMBO Rep 6: 1023-1027.
-
(2005)
EMBO Rep
, vol.6
, pp. 1023-1027
-
-
Schleiff, E.1
Soll, J.2
-
16
-
-
68949207040
-
Biogenesis of β-barrel membrane proteins in bacteria and eukaryotes: evolutionary conservation and divergence
-
Walther DM, Rapaport D, Tommassen J, (2009) Biogenesis of β-barrel membrane proteins in bacteria and eukaryotes: evolutionary conservation and divergence. Cell Mol Life Sci 66: 2789-2804.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 2789-2804
-
-
Walther, D.M.1
Rapaport, D.2
Tommassen, J.3
-
17
-
-
22144495426
-
Interactions between folding factors and bacterial outer membrane proteins
-
Mogensen JE, Otzen DE, (2005) Interactions between folding factors and bacterial outer membrane proteins. Mol Microbiol 57: 326-346.
-
(2005)
Mol Microbiol
, vol.57
, pp. 326-346
-
-
Mogensen, J.E.1
Otzen, D.E.2
-
18
-
-
31344479308
-
Advances in understanding bacterial outer membrane biogenesis
-
Silhavy TJ, Ruiz N, Kahne D, (2006) Advances in understanding bacterial outer membrane biogenesis. Nat Rev Microbiol 4: 57-66.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 57-66
-
-
Silhavy, T.J.1
Ruiz, N.2
Kahne, D.3
-
19
-
-
80052158740
-
Interaction between bacterial outer membrane proteins and periplasmic quality control factors: a kinetic partitioning mechanism
-
Wu S, Ge X, Lv ZX, Zhi ZY, Chang ZY, et al. (2011) Interaction between bacterial outer membrane proteins and periplasmic quality control factors: a kinetic partitioning mechanism. Biochem J 438: 505-511.
-
(2011)
Biochem J
, vol.438
, pp. 505-511
-
-
Wu, S.1
Ge, X.2
Lv, Z.X.3
Zhi, Z.Y.4
Chang, Z.Y.5
-
20
-
-
4143114616
-
Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation
-
Walton TA, Sousa MC, (2004) Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation. Mol Cell 15: 367-374.
-
(2004)
Mol Cell
, vol.15
, pp. 367-374
-
-
Walton, T.A.1
Sousa, M.C.2
-
21
-
-
4744373535
-
Structure of the periplasmic chaperone Skp suggests functional similarity with cytosolic chaperones despite differing architecture
-
Korndorfer IP, Dommel MK, Skerra A, (2004) Structure of the periplasmic chaperone Skp suggests functional similarity with cytosolic chaperones despite differing architecture. Nat Struct Mol Biol 11: 1015-1020.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1015-1020
-
-
Korndorfer, I.P.1
Dommel, M.K.2
Skerra, A.3
-
22
-
-
0037984384
-
Folding and insertion of the outer membrane protein OmpA is assisted by the chaperone Skp and by lipopolysaccharide
-
Bulieris PV, Behrens S, Holst O, Kleinschmidt JH, (2003) Folding and insertion of the outer membrane protein OmpA is assisted by the chaperone Skp and by lipopolysaccharide. J Biol Chem 278: 9092-9099.
-
(2003)
J Biol Chem
, vol.278
, pp. 9092-9099
-
-
Bulieris, P.V.1
Behrens, S.2
Holst, O.3
Kleinschmidt, J.H.4
-
23
-
-
35348966245
-
The trimeric periplasmic chaperone skp of Escherichia coli forms 1: 1 complexes with outer membrane proteins via hydrophobic and electrostatic interactions
-
Qu J, Mayer C, Behrens S, Holst O, Kleinschmidt JH, (2007) The trimeric periplasmic chaperone skp of Escherichia coli forms 1: 1 complexes with outer membrane proteins via hydrophobic and electrostatic interactions. J Mol Biol 374: 91-105.
-
(2007)
J Mol Biol
, vol.374
, pp. 91-105
-
-
Qu, J.1
Mayer, C.2
Behrens, S.3
Holst, O.4
Kleinschmidt, J.H.5
-
24
-
-
60549101514
-
The cavity chaperone Skp protects its substrate from aggregation but allows independent folding of substrate domains
-
Walton TA, Sandoval CM, Fowler CA, Pardi A, Sousa MC, (2009) The cavity chaperone Skp protects its substrate from aggregation but allows independent folding of substrate domains. Proc Natl Acad Sci U S A 106: 1772-1777.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 1772-1777
-
-
Walton, T.A.1
Sandoval, C.M.2
Fowler, C.A.3
Pardi, A.4
Sousa, M.C.5
-
25
-
-
0011116076
-
Dimeric state of cyanine dyes
-
West W, Pearce S, (1965) Dimeric state of cyanine dyes. J Phys Chem 69: 1894-1903.
-
(1965)
J Phys Chem
, vol.69
, pp. 1894-1903
-
-
West, W.1
Pearce, S.2
-
26
-
-
0029910914
-
Profluorescent protease substrates: Intramolecular dimers described by the exciton model
-
Packard BZ, Toptygin DD, Komoriya A, Brand L, (1996) Profluorescent protease substrates: Intramolecular dimers described by the exciton model. Proc Natl Acad Sci U S A 93: 11640-11645.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 11640-11645
-
-
Packard, B.Z.1
Toptygin, D.D.2
Komoriya, A.3
Brand, L.4
-
27
-
-
0034687786
-
Fluorescence quenching: A tool for single-molecule protein folding study
-
Zhuang XW, Ha T, Kim HD, Centner T, Labeit S, et al. (2000) Fluorescence quenching: A tool for single-molecule protein folding study. Proc Natl Acad Sci U S A 97: 14241-14244.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 14241-14244
-
-
Zhuang, X.W.1
Ha, T.2
Kim, H.D.3
Centner, T.4
Labeit, S.5
-
28
-
-
14044264279
-
The kinetics of conformational fluctuations in an unfolded protein measured by fluorescence methods
-
Chattopadhyay K, Elson EL, Frieden C, (2005) The kinetics of conformational fluctuations in an unfolded protein measured by fluorescence methods. Proc Natl Acad Sci U S A 102: 2385-2389.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 2385-2389
-
-
Chattopadhyay, K.1
Elson, E.L.2
Frieden, C.3
-
29
-
-
83655164333
-
Detecting intramolecular conformational dynamics of single molecules in short distance range with sub-nanometer sensitivity
-
Zhou R, Kunzelmann S, Webb MR, Ha T, (2011) Detecting intramolecular conformational dynamics of single molecules in short distance range with sub-nanometer sensitivity. Nano Lett 11: 5482-5488.
-
(2011)
Nano Lett
, vol.11
, pp. 5482-5488
-
-
Zhou, R.1
Kunzelmann, S.2
Webb, M.R.3
Ha, T.4
-
30
-
-
80052450227
-
A universal pathway for kinesin stepping
-
Clancy BE, Behnke-Parks WM, Andreasson JOL, Rosenfeld SS, Block SM, (2011) A universal pathway for kinesin stepping. Nat Struct Mol Biol 18: 1020-1027.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 1020-1027
-
-
Clancy, B.E.1
Behnke-Parks, W.M.2
Andreasson, J.O.L.3
Rosenfeld, S.S.4
Block, S.M.5
-
31
-
-
0036771626
-
Accelerated Poisson-Boltzmann calculations for static and dynamic systems
-
Luo R, David L, Gilson MK, (2002) Accelerated Poisson-Boltzmann calculations for static and dynamic systems. J Comput Chem 23: 1244-1253.
-
(2002)
J Comput Chem
, vol.23
, pp. 1244-1253
-
-
Luo, R.1
David, L.2
Gilson, M.K.3
-
32
-
-
66649116274
-
Binding regions of outer membrane protein A in complexes with the periplasmic chaperone Skp. A site-directed fluorescence study
-
Qu J, Behrens-Kneip S, Holst O, Kleinschmidt JH, (2009) Binding regions of outer membrane protein A in complexes with the periplasmic chaperone Skp. A site-directed fluorescence study. Biochemistry 48: 4926-4936.
-
(2009)
Biochemistry
, vol.48
, pp. 4926-4936
-
-
Qu, J.1
Behrens-Kneip, S.2
Holst, O.3
Kleinschmidt, J.H.4
-
33
-
-
0026003344
-
Determining the extent of labeling for tetramethylrhodamine protein conjugates
-
Meadows DL, Shafer JS, Schultz JS, (1991) Determining the extent of labeling for tetramethylrhodamine protein conjugates. J Immunol Methods 143: 263-272.
-
(1991)
J Immunol Methods
, vol.143
, pp. 263-272
-
-
Meadows, D.L.1
Shafer, J.S.2
Schultz, J.S.3
-
34
-
-
58049191499
-
Base-by-base dynamics in DNA hybridization probed by fluorescence correlation spectroscopy
-
Chen XD, Zhou Y, Qu P, Zhao XS, (2008) Base-by-base dynamics in DNA hybridization probed by fluorescence correlation spectroscopy. J Am Chem Soc 130: 16947-16952.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 16947-16952
-
-
Chen, X.D.1
Zhou, Y.2
Qu, P.3
Zhao, X.S.4
-
35
-
-
0033168398
-
Analysis of interaction between chaperonin GroEL and its substrate using fluorescence correlation spectroscopy
-
Pack CG, Nishimura G, Tamura M, Aoki K, Taguchi H, et al. (1999) Analysis of interaction between chaperonin GroEL and its substrate using fluorescence correlation spectroscopy. Cytometry 36: 247-253.
-
(1999)
Cytometry
, vol.36
, pp. 247-253
-
-
Pack, C.G.1
Nishimura, G.2
Tamura, M.3
Aoki, K.4
Taguchi, H.5
-
36
-
-
34247186195
-
-
University of California, San Francisco
-
Case DA, Darden TA, Cheatham TE, Simmerling CL, Wang J, et al. (2006) AMBER 9. University of California, San Francisco.
-
(2006)
AMBER 9
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
-
37
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang J, Cieplak P, Kollman PA, (2000) How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J Comput Chem 21: 1049-1074.
-
(2000)
J Comput Chem
, vol.21
, pp. 1049-1074
-
-
Wang, J.1
Cieplak, P.2
Kollman, P.A.3
-
38
-
-
1242346370
-
The missing term in effective pair potentials
-
Berendsen H, Grigera J, Straatsma T, (1987) The missing term in effective pair potentials. J Phys Chem 91: 6269-6271.
-
(1987)
J Phys Chem
, vol.91
, pp. 6269-6271
-
-
Berendsen, H.1
Grigera, J.2
Straatsma, T.3
-
39
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
-
Ryckaert JP, Ciccotti G, Berendsen HJC, (1977) Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J Comput Phys 23: 327-341.
-
(1977)
J Comput Phys
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
40
-
-
33846823909
-
Particle mesh Ewald: An N log (N) method for Ewald sums in large systems
-
Darden T, York D, Pedersen L, (1993) Particle mesh Ewald: An N log (N) method for Ewald sums in large systems. J Chem Phys 98: 10089-10089.
-
(1993)
J Chem Phys
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
41
-
-
33748456679
-
Crystal structure of osmoporin OmpC from E.coli at 2.0 angstrom
-
Basle A, Rummel G, Storici P, Rosenbusch JP, Schirmer T, (2006) Crystal structure of osmoporin OmpC from E.coli at 2.0 angstrom. J Mol Biol 362: 933-942.
-
(2006)
J Mol Biol
, vol.362
, pp. 933-942
-
-
Basle, A.1
Rummel, G.2
Storici, P.3
Rosenbusch, J.P.4
Schirmer, T.5
-
42
-
-
33744814357
-
Increasing the accuracy of solution NMR structures of membrane proteins by application of residual dipolar couplings
-
Cierpicki T, Liang B, Tamm LK, Bushweller JH, (2006) Increasing the accuracy of solution NMR structures of membrane proteins by application of residual dipolar couplings. High-resolution structure of outer membrane protein A. J Am Chem Soc 128: 6947-6951.
-
(2006)
High-Resolution Structure of Outer Membrane Protein A. J Am Chem Soc
, vol.128
, pp. 6947-6951
-
-
Cierpicki, T.1
Liang, B.2
Tamm, L.K.3
Bushweller, J.H.4
-
43
-
-
0026779245
-
Crystal structures explain functional properties of two Escherichia coli porins
-
Cowan SW, Schirmer T, Rummel G, Steiert M, Ghosh R, et al. (1992) Crystal structures explain functional properties of two Escherichia coli porins. Nature 358: 727-733.
-
(1992)
Nature
, vol.358
, pp. 727-733
-
-
Cowan, S.W.1
Schirmer, T.2
Rummel, G.3
Steiert, M.4
Ghosh, R.5
|