메뉴 건너뛰기




Volumn 8, Issue 5, 2012, Pages 1135-1147

Population genetic structure of a widespread coniferous tree, Taxodium distichum [L.] Rich. (Cupressaceae), in the Mississippi River Alluvial Valley and Florida

Author keywords

Bald cypress; Pond cypress; Population structure; SSRs; Taxodium distichum

Indexed keywords

CONIFERALES; CUPRESSACEAE; TAXODIUM; TAXODIUM DISTICHUM; TAXODIUM DISTICHUM VAR. IMBRICARIUM;

EID: 84866743563     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-012-0501-z     Document Type: Article
Times cited : (6)

References (55)
  • 1
    • 0037188972 scopus 로고    scopus 로고
    • Population dynamics of Pinus taeda L. based on nuclear microsatellites
    • Al-Rabab'ah MA, Williams CG (2002) Population dynamics of Pinus taeda L. based on nuclear microsatellites. Forest Ecol Manage 163: 263-271.
    • (2002) Forest Ecol Manage , vol.163 , pp. 263-271
    • Al-Rabab'ah, M.A.1    Williams, C.G.2
  • 2
    • 0028349073 scopus 로고
    • Isolation of human simple repeat loci by hybridization selection
    • Armour JA, Neumann R, Gobert S, Jeffreys AJ (1994) Isolation of human simple repeat loci by hybridization selection. Hum Mol Genet 3(4): 599-605.
    • (1994) Hum Mol Genet , vol.3 , Issue.4 , pp. 599-605
    • Armour, J.A.1    Neumann, R.2    Gobert, S.3    Jeffreys, A.J.4
  • 3
    • 0001141436 scopus 로고
    • Gene trees and organismal histories: a phylogenetic approach to population biology
    • Avise JC (1989) Gene trees and organismal histories: a phylogenetic approach to population biology. Evolution 43(6): 1192-1208.
    • (1989) Evolution , vol.43 , Issue.6 , pp. 1192-1208
    • Avise, J.C.1
  • 4
    • 0000320056 scopus 로고
    • A comparison of the structure, primary productivity, and transpiration of cypress ecosystems in Florida
    • Brown S (1981) A comparison of the structure, primary productivity, and transpiration of cypress ecosystems in Florida. Ecol Monogr 51: 403-427.
    • (1981) Ecol Monogr , vol.51 , pp. 403-427
    • Brown, S.1
  • 6
    • 0000723355 scopus 로고
    • Vegetation maps for eastern North America: 20 000 yr. BP to the present
    • R. C. Romans (Ed.), New York: Plenum
    • Delcourt PA, Delcourt HR (1981a) Vegetation maps for eastern North America: 20 000 yr. BP to the present. In: Romans RC (ed) Geobotany. Plenum, New York, pp 123-165.
    • (1981) Geobotany , pp. 123-165
    • Delcourt, P.A.1    Delcourt, H.R.2
  • 7
    • 0000723355 scopus 로고
    • Vegetation maps for eastern North America: 40,000 yr b.p. to the present
    • R. C. Romans (Ed.), New York: Plenum
    • Delcourt PA, Delcourt HR (1981b) Vegetation maps for eastern North America: 40, 000 yr b. p. to the present. In: Romans RC (ed) Geobotany. Plenum, New York, p 263.
    • (1981) Geobotany , pp. 263
    • Delcourt, P.A.1    Delcourt, H.R.2
  • 8
    • 68949198855 scopus 로고    scopus 로고
    • Plant traits correlated with generation time directly affect inbreeding depression and mating system and indirectly genetic structure
    • Duminil J, Hardy OJ, Petit RJ (2009) Plant traits correlated with generation time directly affect inbreeding depression and mating system and indirectly genetic structure. BMC Evol Biol 9: 177.
    • (2009) BMC Evol Biol , vol.9 , pp. 177
    • Duminil, J.1    Hardy, O.J.2    Petit, R.J.3
  • 9
    • 65349187578 scopus 로고    scopus 로고
    • Molecular genetic markers: discovery, applications, data storage and visualisation
    • Duran C, Appleby N, Edwards D, Batley J (2009) Molecular genetic markers: discovery, applications, data storage and visualisation. Curr Bioinform 4: 16-27.
    • (2009) Curr Bioinform , vol.4 , pp. 16-27
    • Duran, C.1    Appleby, N.2    Edwards, D.3    Batley, J.4
  • 10
    • 39749129127 scopus 로고    scopus 로고
    • Genetic variation across species' geographical ranges: the central-marginal hypothesis and beyond
    • Eckert CG, Samis KE, Lougheed SC (2008) Genetic variation across species' geographical ranges: the central-marginal hypothesis and beyond. Mol Ecol 17(5): 1170-1188.
    • (2008) Mol Ecol , vol.17 , Issue.5 , pp. 1170-1188
    • Eckert, C.G.1    Samis, K.E.2    Lougheed, S.C.3
  • 11
    • 0035678654 scopus 로고    scopus 로고
    • Low-copy microsatellite recovery from a conifer genome
    • Elsik CG, Williams CG (2001) Low-copy microsatellite recovery from a conifer genome. Theor Appl Genet 103(8): 1189-1195.
    • (2001) Theor Appl Genet , vol.103 , Issue.8 , pp. 1189-1195
    • Elsik, C.G.1    Williams, C.G.2
  • 12
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 13
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HE (2010) Arlequin suite ver 3. 5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10(3): 564-567.
    • (2010) Mol Ecol Resour , vol.10 , Issue.3 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.2
  • 14
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131(2): 479-491.
    • (1992) Genetics , vol.131 , Issue.2 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 15
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 17
    • 0000515987 scopus 로고
    • Construction and screening of microsatellite-enriched genomic libraries
    • J. Ferraris and S. Palumbi (Eds.), New York: Wiley
    • Fleischer RC, Loew S (1995) Construction and screening of microsatellite-enriched genomic libraries. In: Ferraris J, Palumbi S (eds) Molecular zoology: advances, strategies and protocols. Wiley, New York, pp 459-468.
    • (1995) Molecular Zoology: Advances, Strategies and Protocols , pp. 459-468
    • Fleischer, R.C.1    Loew, S.2
  • 18
    • 85007320774 scopus 로고
    • FSTAT (version 1.2): a computer program to calculate F-statistics
    • Goudet J (1995) FSTAT (version 1. 2): a computer program to calculate F-statistics. J Hered 86(6): 485-486.
    • (1995) J Hered , vol.86 , Issue.6 , pp. 485-486
    • Goudet, J.1
  • 20
    • 14844359279 scopus 로고    scopus 로고
    • Hierfstat, a package for R to compute and test hierarchical F-statistics
    • Goudet J (2005) Hierfstat, a package for R to compute and test hierarchical F-statistics. Mol Ecol Notes 5: 184-186.
    • (2005) Mol Ecol Notes , vol.5 , pp. 184-186
    • Goudet, J.1
  • 21
    • 18444385410 scopus 로고    scopus 로고
    • Conserving biodiversity under climate change: the rear edge matters
    • Hampe A, Petit RJ (2005) Conserving biodiversity under climate change: the rear edge matters. Ecol Lett 8(5): 461-467.
    • (2005) Ecol Lett , vol.8 , Issue.5 , pp. 461-467
    • Hampe, A.1    Petit, R.J.2
  • 22
    • 33749222363 scopus 로고
    • Factors influencing levels of genetic diversity in woody plant species
    • Hamrick JL, Godt MJW, Sherman-Broyles SL (1992) Factors influencing levels of genetic diversity in woody plant species. New Forests 6: 95-124.
    • (1992) New Forests , vol.6 , pp. 95-124
    • Hamrick, J.L.1    Godt, M.J.W.2    Sherman-Broyles, S.L.3
  • 23
    • 0002715940 scopus 로고    scopus 로고
    • Microsatellites and other simple sequences: genomic context and mutational mechanisms
    • D. B. Goldstein, C. Schlötterer (Eds.), Oxford: Oxford University Press
    • Hancock JM (1999) Microsatellites and other simple sequences: genomic context and mutational mechanisms. In: Goldstein DB, Schlötterer C (eds) Microsatellites: evolution and applications. Oxford University Press, Oxford, pp 1-9.
    • (1999) Microsatellites: Evolution and Applications , pp. 1-9
    • Hancock, J.M.1
  • 24
    • 0032822582 scopus 로고    scopus 로고
    • Post-glacial re-colonization of European biota
    • Hewitt GM (1999) Post-glacial re-colonization of European biota. Biol J Linn Soc 68(1-2): 87-112.
    • (1999) Biol J Linn Soc , vol.68 , Issue.1-2 , pp. 87-112
    • Hewitt, G.M.1
  • 25
    • 1242299019 scopus 로고    scopus 로고
    • Genetic consequences of climatic oscillations in the Quaternary
    • Hewitt GM (2004) Genetic consequences of climatic oscillations in the Quaternary. Philos Trans Royal Soc London Ser B: Biol Sci 359(1442): 183-195.
    • (2004) Philos Trans Royal Soc London Ser B: Biol Sci , vol.359 , Issue.1442 , pp. 183-195
    • Hewitt, G.M.1
  • 26
    • 77952294620 scopus 로고    scopus 로고
    • Isolation with migration models for more than two populations
    • Hey J (2010) Isolation with migration models for more than two populations. Mol Biol Evol 27(4): 905-920.
    • (2010) Mol Biol Evol , vol.27 , Issue.4 , pp. 905-920
    • Hey, J.1
  • 27
    • 64849099449 scopus 로고    scopus 로고
    • Inferring the past from the present phylogeographic structure of North American forest trees: seeing the forest for the genes
    • Jaramillo-Correa JP, Beaulieu J, Khasa DP, Bousquet J (2009) Inferring the past from the present phylogeographic structure of North American forest trees: seeing the forest for the genes. Can J For Res 39(2): 286-307.
    • (2009) Can J For Res , vol.39 , Issue.2 , pp. 286-307
    • Jaramillo-Correa, J.P.1    Beaulieu, J.2    Khasa, D.P.3    Bousquet, J.4
  • 28
    • 77649176976 scopus 로고    scopus 로고
    • The contribution of recombination to heterozygosity differs among plant evolutionary lineages and life-forms
    • Jaramillo-Correa JP, Verdú M, González-Martíne SC (2010) The contribution of recombination to heterozygosity differs among plant evolutionary lineages and life-forms. BMC Evol Biol 10: 22.
    • (2010) BMC Evol Biol , vol.10 , pp. 22
    • Jaramillo-Correa, J.P.1    Verdú, M.2    González-Martíne, S.C.3
  • 29
    • 33744952278 scopus 로고    scopus 로고
    • Contrasting patterns of DNA variation in natural populations of two related conifers, Cryptomeria japonica and Taxodium distichum (Cupressaceae sensu lato)
    • Kado T, Ushio Y, Yoshimaru H, Tsumura Y, Tachida H (2006) Contrasting patterns of DNA variation in natural populations of two related conifers, Cryptomeria japonica and Taxodium distichum (Cupressaceae sensu lato). Genes Genet Syst 81(2): 103-113.
    • (2006) Genes Genet Syst , vol.81 , Issue.2 , pp. 103-113
    • Kado, T.1    Ushio, Y.2    Yoshimaru, H.3    Tsumura, Y.4    Tachida, H.5
  • 30
    • 78249244778 scopus 로고    scopus 로고
    • Multilocus patterns of nucleotide polymorphism and demographic change in Taxodium distichum (Cupressaceae) in the lower Mississippi River Alluvial Valley
    • Kusumi J, Zidong L, Kado T, Tsumura Y, Middleton BA, Tachida H (2010) Multilocus patterns of nucleotide polymorphism and demographic change in Taxodium distichum (Cupressaceae) in the lower Mississippi River Alluvial Valley. Am J Bot 97(11): 1848-1857.
    • (2010) Am J Bot , vol.97 , Issue.11 , pp. 1848-1857
    • Kusumi, J.1    Zidong, L.2    Kado, T.3    Tsumura, Y.4    Middleton, B.A.5    Tachida, H.6
  • 31
    • 84856715857 scopus 로고    scopus 로고
    • Computer program and documentation distributed by the author, Accessed Nov 2009
    • Langella O (2002) Population 1. 2. 30. Computer program and documentation distributed by the author. http://bioinformatics. org/~tryphon/populations/. Accessed Nov 2009.
    • (2002) Population 1. 2. 30
    • Langella, O.1
  • 32
    • 24344445570 scopus 로고    scopus 로고
    • Population genetic structure of baldcypress (Taxodium distichum [L.] Rich. var. distichum) and pondcypress (T. distichum var. imbricarium [Nuttall] Croom)
    • Lickey EB, Walker GL (2002) Population genetic structure of baldcypress (Taxodium distichum [L.] Rich. var. distichum) and pondcypress (T. distichum var. imbricarium [Nuttall] Croom). Southeast Nat 1(2): 131-148.
    • (2002) Southeast Nat , vol.1 , Issue.2 , pp. 131-148
    • Lickey, E.B.1    Walker, G.L.2
  • 33
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel NA (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
    • (1967) Cancer Res , vol.27 , pp. 209-220
    • Mantel, N.A.1
  • 34
    • 2642586430 scopus 로고    scopus 로고
    • Use of a latitudinal gradient in bald cypress (Taxodium distichum) production to examine physiological controls of biotic boundaries and potential responses to environmental change
    • Middleton BA, McKee KL (2004) Use of a latitudinal gradient in bald cypress (Taxodium distichum) production to examine physiological controls of biotic boundaries and potential responses to environmental change. Glob Ecol Biogeogr 13(3): 247-258.
    • (2004) Glob Ecol Biogeogr , vol.13 , Issue.3 , pp. 247-258
    • Middleton, B.A.1    McKee, K.L.2
  • 36
    • 0020965531 scopus 로고
    • Accuracy of estimated phylogenetic trees from molecular data
    • Nei M, Tajima F, Tateno Y (1983) Accuracy of estimated phylogenetic trees from molecular data. J Mol Evol 19: 153-170.
    • (1983) J Mol Evol , vol.19 , pp. 153-170
    • Nei, M.1    Tajima, F.2    Tateno, Y.3
  • 37
    • 0022843155 scopus 로고
    • Ecophysiological implications of tree architecture for two cypress taxa, Taxodium distichum (L.) Rich. and T. ascendens Brongn
    • Neufeld HS (1986) Ecophysiological implications of tree architecture for two cypress taxa, Taxodium distichum (L.) Rich. and T. ascendens Brongn. Bull Torrey Bot Club 113: 118-124.
    • (1986) Bull Torrey Bot Club , vol.113 , pp. 118-124
    • Neufeld, H.S.1
  • 38
    • 61649119281 scopus 로고    scopus 로고
    • Statistical inferences in phylogeography
    • Nielsen R, Beaumont MA (2009) Statistical inferences in phylogeography. Mol Ecol 18(6): 1034-1047.
    • (2009) Mol Ecol , vol.18 , Issue.6 , pp. 1034-1047
    • Nielsen, R.1    Beaumont, M.A.2
  • 39
    • 33644871292 scopus 로고    scopus 로고
    • GENALEX6: genetic analysis in Excel. Population genetic software for teaching and research
    • Peakall R, Smouse PE (2006) GENALEX6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
    • (2006) Mol Ecol Notes , vol.6 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 41
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 42
    • 0030888985 scopus 로고    scopus 로고
    • Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance
    • Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145: 1219-1228.
    • (1997) Genetics , vol.145 , pp. 1219-1228
    • Rousset, F.1
  • 43
    • 0036171546 scopus 로고    scopus 로고
    • The 'abundant centre' distribution: to what extent is it a biogeographical rule?
    • Sagarin RD, Gaines SD (2002) The 'abundant centre' distribution: to what extent is it a biogeographical rule? Ecol Lett 5(1): 137-147.
    • (2002) Ecol Lett , vol.5 , Issue.1 , pp. 137-147
    • Sagarin, R.D.1    Gaines, S.D.2
  • 44
    • 33747422123 scopus 로고    scopus 로고
    • Moving beyond assumptions to understand abundance distributions across the ranges of species
    • Sagarin RD, Gaines SD, Gaylord B (2006) Moving beyond assumptions to understand abundance distributions across the ranges of species. Trends Ecol Evol 21(9): 524-530.
    • (2006) Trends Ecol Evol , vol.21 , Issue.9 , pp. 524-530
    • Sagarin, R.D.1    Gaines, S.D.2    Gaylord, B.3
  • 45
    • 0032147402 scopus 로고    scopus 로고
    • Genetic diversity in long-leaf pine (Pinus palustris): influence of historical and prehistorical events
    • Schmidtling RC, Hipkins V (1998) Genetic diversity in long-leaf pine (Pinus palustris): influence of historical and prehistorical events. Can J Forest Res 28: 1135-1145.
    • (1998) Can J Forest Res , vol.28 , pp. 1135-1145
    • Schmidtling, R.C.1    Hipkins, V.2
  • 48
    • 21344448622 scopus 로고    scopus 로고
    • Microsatellite markers reveal high allelic variation in natural populations of Cryptomeria japonica near refugial areas of the last glacial period
    • Takahashi T, Tani N, Taira H, Tsumura Y (2005) Microsatellite markers reveal high allelic variation in natural populations of Cryptomeria japonica near refugial areas of the last glacial period. J Plant Res 118(2): 83-90.
    • (2005) J Plant Res , vol.118 , Issue.2 , pp. 83-90
    • Takahashi, T.1    Tani, N.2    Taira, H.3    Tsumura, Y.4
  • 49
    • 0033197733 scopus 로고    scopus 로고
    • Genetic diversity and differentiation of Taxodium in the south-eastern United States using cleaved amplified polymorphic sequences
    • Tsumura Y, Tomaru N, Suyama Y, Bacchus S (1999) Genetic diversity and differentiation of Taxodium in the south-eastern United States using cleaved amplified polymorphic sequences. Heredity 83: 229-238.
    • (1999) Heredity , vol.83 , pp. 229-238
    • Tsumura, Y.1    Tomaru, N.2    Suyama, Y.3    Bacchus, S.4
  • 50
    • 0009290907 scopus 로고
    • The nomencalture of pondcypress and bald-cypress (Taxodiaceae)
    • Watson FD (1986) The nomencalture of pondcypress and bald-cypress (Taxodiaceae). Taxon 34: 506-509.
    • (1986) Taxon , vol.34 , pp. 506-509
    • Watson, F.D.1
  • 51
    • 0343277382 scopus 로고
    • The vegetation record of a Mid-Wisconsin interstadial in northwest Georgia
    • Watts WA (1973) The vegetation record of a Mid-Wisconsin interstadial in northwest Georgia. Quanternary Res 3: 257-268.
    • (1973) Quanternary Res , vol.3 , pp. 257-268
    • Watts, W.A.1
  • 52
    • 0011224094 scopus 로고
    • Taxodium distichum (L.) Rich. baldcypress
    • R. M. Burns and B. H. Honkala (Eds.), Washington, DC: U.S. Department of Agriculture, Forest Service
    • Wilhite LP, Toliver JR (1990) Taxodium distichum (L.) Rich. baldcypress. In: Burns RM, Honkala BH (eds) Silvics of North America: 1. Conifers. U. S. Department of Agriculture, Forest Service, Washington, DC.
    • (1990) Silvics of North America: 1. Conifers
    • Wilhite, L.P.1    Toliver, J.R.2
  • 53
    • 0001024012 scopus 로고
    • Isolation by distance
    • Wright S (1943) Isolation by distance. Genetics 28(2): 114-138.
    • (1943) Genetics , vol.28 , Issue.2 , pp. 114-138
    • Wright, S.1
  • 54
    • 84890417804 scopus 로고
    • The general structure of populations
    • Wright S (1951) The general structure of populations. Ann Eugen 15: 323-354.
    • (1951) Ann Eugen , vol.15 , pp. 323-354
    • Wright, S.1
  • 55
    • 0031717743 scopus 로고    scopus 로고
    • Estimating hierarchical F-statistics
    • Yang RC (1998) Estimating hierarchical F-statistics. Evolution 52(4): 950-956.
    • (1998) Evolution , vol.52 , Issue.4 , pp. 950-956
    • Yang, R.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.