Comparison of principal component analysis and biochemical component analysis in Raman spectroscopy for the discrimination of apoptosis and necrosis in K562 leukemia cells

Optics Express

Volumn 20, Issue 20, 2012, Pages 22158-22171

  Hong Ong, Yi ^a   Lim, Mayasari ^a   Liu, Quan ^a  

^a Nanyang Technological University   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; DISEASES; NUCLEIC ACIDS; PRINCIPAL COMPONENT ANALYSIS; RAMAN SCATTERING; RAMAN SPECTROSCOPY;

APOPTOTIC; BIOCHEMICAL CHANGES; BIOCHEMICAL COMPONENTS; BIOLOGICAL RESEARCH; BROAD APPLICATION; CELL BIOLOGY; CLASSIFICATION ACCURACY; INTERPRETABILITY; LABEL-FREE TECHNIQUES; LEUKEMIA CELLS; LIVE CELL; PRINCIPLE COMPONENT; SAMPLE CLASSIFICATION;

CELL DEATH;

TUMOR MARKER;

APOPTOSIS; ARTICLE; AUTOMATED PATTERN RECOGNITION; CELL STRAIN K 562; COMPARATIVE STUDY; HUMAN; METHODOLOGY; NECROSIS; PRINCIPAL COMPONENT ANALYSIS; RAMAN SPECTROMETRY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY;

APOPTOSIS; HUMANS; K562 CELLS; NECROSIS; PATTERN RECOGNITION, AUTOMATED; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPECTRUM ANALYSIS, RAMAN; TUMOR MARKERS, BIOLOGICAL;

EID: 84866651111     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.20.022158     Document Type: Article

References (30)

1. P. Chen, A. G. Shen, X. D. Zhou, and J. M. Hu, "Bio-Raman spectroscopy: a potential clinical analytical method assisting in disease diagnosis," Anal. Methods 3(6), 1257-1269 (2011).
2. C. L. Zavaleta, B. R. Smith, I. Walton, W. Doering, G. Davis, B. Shojaei, M. J. Natan, and S. S. Gambhir, "Multiplexed imaging of surface enhanced Raman scattering nanotags in living mice using noninvasive Raman spectroscopy," Proc. Natl. Acad. Sci. U.S.A. 106(32), 13511-13516 (2009).
3. N. Kunapareddy, J. P. Freyer, and J. R. Mourant, "Raman spectroscopic characterization of necrotic cell death," J. Biomed. Opt. 13(5), 054002 (2008).
4. B. R. Lutz, C. E. Dentinger, L. N. Nguyen, L. Sun, J. W. Zhang, A. N. Allen, S. Chan, and B. S. Knudsen, "Spectral Analysis of Multiplex Raman Probe Signatures," ACS Nano 2(11), 2306-2314 (2008).
5. J. R. Mourant, J. Dominguez, S. Carpenter, K. W. Short, T. M. Powers, R. Michalczyk, N. Kunapareddy, A. Guerra, and J. P. Freyer, "Comparison of vibrational spectroscopy to biochemical and flow cytometry methods for analysis of the basic biochemical composition of mammalian cells," J. Biomed. Opt. 11(6), 064024 (2006).
6. J. R. Mourant, K. W. Short, S. Carpenter, N. Kunapareddy, L. Coburn, T. M. Powers, and J. P. Freyer, "Biochemical differences in tumorigenic and nontumorigenic cells measured by Raman and infrared spectroscopy," J. Biomed. Opt. 10(3), 031106 (2005).
7. A. G. Ryder, "Classification of narcotics in solid mixtures using Principal Component Analysis and Raman spectroscopy," J. Forensic Sci. 47(2), 275-284 (2002).
8. B. G. M. Vandeginste, D. L. Massart, L. M. C. Buydens, S. De Jong, P. J. Lewi, and J. Smeyers-Verbeke, Handbook of Chemometrics and Qualimetrics (Elsevier Science, 1998).
9. H. Shinzawa, K. Awa, W. Kanematsu, and Y. Ozaki, "Multivariate data analysis for Raman spectroscopic imaging," J. Raman Spectrosc. 40(12), 1720-1725 (2009).
10. K. E. Shafer-Peltier, A. S. Haka, M. Fitzmaurice, J. Crowe, J. Myles, R. R. Dasari, and M. S. Feld, "Raman microspectroscopic model of human breast tissue: implications for breast cancer diagnosis in vivo," J. Raman Spectrosc. 33(7), 552-563 (2002).
11. D. Van de Sompel, E. Garai, C. Zavaleta, and S. S. Gambhir, "A Hybrid Least Squares and Principal Component Analysis Algorithm for Raman Spectroscopy," PLoS ONE 7(6), e38850 (2012).
12. I. A. Boere, T. C. B. Schut, J. van den Boogert, R. W. F. de Bruin, and G. J. Puppels, "Use of fibre optic probes for detection of Barrett's epithelium in the rat oesophagus by Raman spectroscopy," Vib. Spectrosc. 32(1), 47-55 (2003).
13. A. Molckovsky, L. M. Song, M. G. Shim, N. E. Marcon, and B. C. Wilson, "Diagnostic potential of nearinfrared Raman spectroscopy in the colon: differentiating adenomatous from hyperplastic polyps," Gastrointest. Endosc. 57(3), 396-402 (2003).
14. J. W. Chan, D. S. Taylor, S. M. Lane, T. Zwerdling, J. Tuscano, and T. Huser, "Nondestructive identification of individual leukemia cells by laser trapping Raman spectroscopy," Anal. Chem. 80(6), 2180-2187 (2008).
15. H. Yao, Z. Tao, M. Ai, L. Peng, G. Wang, B. He, and Y.-Li, "Raman spectroscopic analysis of apoptosis of single human gastric cancer cells," Vib. Spectrosc. 50(2), 193-197 (2009).
16. J. L. Pichardo-Molina, C. Frausto-Reyes, O. Barbosa-García, R. Huerta-Franco, J. L. González-Trujillo, C. A. Ramírez-Alvarado, G. Gutiérrez-Juárez, and C. Medina-Gutiérrez, "Raman spectroscopy and multivariate analysis of serum samples from breast cancer patients," Lasers Med. Sci. 22(4), 229-236 (2007).
17. M. Moreno, L. Raniero, E. A. L. Arisawa, A. M. D. Santo, E. A. P. dos Santos, R. A. Bitar, and A. A. Martin, "Raman spectroscopy study of breast disease," Theor. Chem. Acc. 125(3-6), 329-334 (2010).
18. G. Pyrgiotakis, O. E. Kundakcioglu, K. Finton, P. M. Pardalos, K. Powers, and B. M. Moudgil, "Cell death discrimination with Raman spectroscopy and support vector machines," Ann. Biomed. Eng. 37(7), 1464-1473 (2009).
19. I. Notingher, S. Verrier, H. Romanska, A. E. Bishop, J. M. Polak, and L. L. Hench, "In situ characterisation of living cells by Raman spectroscopy," Spectrosc. Int. J. 16(2), 43-51 (2002).
20. J. S. U. Hjorth, "Cross validation," in Computer Intensive Statistical Methods: Validation, Model Selection, and Bootstrap (Chapman and Hall/CRC, 1993), 27-28.
21. N. Stone, C. Kendall, J. Smith, P. Crow, and H. Barr, "Raman spectroscopy for identification of epithelial cancers," Faraday Discuss. 126, 141-157, discussion 169-183 (2004).
22. A. Zoladek, F. C. Pascut, P. Patel, and I. Notingher, "Non-invasive time-course imaging of apoptotic cells by confocal Raman micro-spectroscopy, " J. Raman Spectrosc. 42(3), 251-258 (2011).
23. S. Malladi, M. Challa-Malladi, and S. B. Bratton, "Apoptosis," in Comprehensive Toxicology (Second Edition), A. M. Editor-in-Chief: Charlene, ed. (Elsevier, 2010), 543-578.
24. T. M. Sauerwald, A. Lewis, H. Dorai, and M. J. Betenbaugh, "Apoptosis: The Signaling Pathways and Their Control," in Comprehensive Biotechnology (Second Edition), M.-Y. Editor-in-Chief: Murray, ed. (Academic Press, 2011), 483-494.
25. A. Vaculova and B. Zhivotovsky, "Caspases: Determination of their activities in apoptotic cells," in Programmed Cell Death, General Principles for Studying Cell Death, Pt A, R. KhosraviFar, Z. Zakeri, R. A. Lockshin, and M. Piacentini, eds. (Elsevier Academic Press Inc, 2008), 157-181.
26. K. S. Saini and N. I. Walker, "Biochemical and molecular mechanisms regulating apoptosis," Mol. Cell. Biochem. 178(1/2), 9-25 (1998).
27. M. Leist and P. Nicotera, "Cell Death: Apoptosis versus Necrosis," in Primer on Cerebrovascular Diseases(Academic Press, 1997), 101-104.
28. S. Elmore, "Apoptosis: a review of programmed cell death," Toxicol. Pathol. 35(4), 495-516 (2007).
29. N. Kunapareddy, S. Carpenter, J. P. Freyer, and J. R. Mourant, "Biochemical characterization of cell-death via Raman spectroscopy-Art. no. 60930V," in Biomedical Vibrational Spectroscopy III: Advances in Research and Industry, A. MahadevanJansen, and W. H. Petrich, eds. (SPIE, 2006).
30. S. Verrier, I. Notingher, J. M. Polak, and L. L. Hench, "In situ monitoring of cell death using Raman microspectroscopy," Biopolymers 74(1-2), 157-162 (2004).