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Volumn 302, Issue 4-5, 2012, Pages 221-224

MRNA splicing in trypanosomes

Author keywords

SnRNP; Spliceosome; Splicing; Trypanosoma

Indexed keywords

MESSENGER RNA; PROTEIN SM; SMALL NUCLEAR RNA; VARIANT SURFACE GLYCOPROTEIN;

EID: 84866634543     PISSN: 14384221     EISSN: 16180607     Source Type: Journal    
DOI: 10.1016/j.ijmm.2012.07.004     Document Type: Short Survey
Times cited : (37)

References (38)
  • 1
    • 0033569743 scopus 로고    scopus 로고
    • A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
    • Achsel T., Brahms H., Kastner B., Bachi A., Wilm M., Lührmann R. A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro. EMBO J. 1999, 18:5789-5802.
    • (1999) EMBO J. , vol.18 , pp. 5789-5802
    • Achsel, T.1    Brahms, H.2    Kastner, B.3    Bachi, A.4    Wilm, M.5    Lührmann, R.6
  • 2
    • 0026730321 scopus 로고
    • Mass spectrometry of mRNA cap 4 from trypanosomatids reveals two novel nucleosides
    • Bangs J.D., Crain P.F., Hashizume F., McCloskey J.A., Boothroyd J.C. Mass spectrometry of mRNA cap 4 from trypanosomatids reveals two novel nucleosides. J. Biol. Chem. 1992, 267:9805-9815.
    • (1992) J. Biol. Chem. , vol.267 , pp. 9805-9815
    • Bangs, J.D.1    Crain, P.F.2    Hashizume, F.3    McCloskey, J.A.4    Boothroyd, J.C.5
  • 3
    • 22244441812 scopus 로고    scopus 로고
    • The genome of the African trypanosome Trypanosoma brucei
    • Berriman M., et al. The genome of the African trypanosome Trypanosoma brucei. Science 2005, 309:416-422.
    • (2005) Science , vol.309 , pp. 416-422
    • Berriman, M.1
  • 4
    • 0030273312 scopus 로고    scopus 로고
    • Nematode spliced leaders-ubiquity, evolution and utility
    • Blaxter M., Liu L. Nematode spliced leaders-ubiquity, evolution and utility. Int. J. Parasitol. 1996, 26:1025-1033.
    • (1996) Int. J. Parasitol. , vol.26 , pp. 1025-1033
    • Blaxter, M.1    Liu, L.2
  • 5
    • 0020352607 scopus 로고
    • Transcripts coding for variant surface glycoproteins of Trypanosoma brucei have a short, identical exon at their 5' end
    • Boothroyd J.C., Cross G.A. Transcripts coding for variant surface glycoproteins of Trypanosoma brucei have a short, identical exon at their 5' end. Gene 1982, 20:281-289.
    • (1982) Gene , vol.20 , pp. 281-289
    • Boothroyd, J.C.1    Cross, G.A.2
  • 7
    • 0026440088 scopus 로고
    • RNA polymerase I-mediated protein-coding gene expression in Trypanosoma brucei
    • Chung H.M., Lee G.S.M., van der Ploeg L.H.T. RNA polymerase I-mediated protein-coding gene expression in Trypanosoma brucei. Parasitol. Today 1992, 8:414-418.
    • (1992) Parasitol. Today , vol.8 , pp. 414-418
    • Chung, H.M.1    Lee, G.S.M.2    van der Ploeg, L.H.T.3
  • 8
    • 0030842141 scopus 로고    scopus 로고
    • Surprising diversity and distribution of spliced leader RNAs in flatworms
    • Davis R.E. Surprising diversity and distribution of spliced leader RNAs in flatworms. Mol. Biochem. Parasitol. 1997, 87:29-48.
    • (1997) Mol. Biochem. Parasitol. , vol.87 , pp. 29-48
    • Davis, R.E.1
  • 10
    • 10744232966 scopus 로고    scopus 로고
    • The sequence and analysis of Trypanosoma brucei chromosome II
    • El-Sayed N.M., et al. The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic Acids Res. 2003, 31:4856-4863.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4856-4863
    • El-Sayed, N.M.1
  • 11
    • 0035312534 scopus 로고    scopus 로고
    • Trypanosome spliced leader RNA genes contain the first identified RNA polymerase II gene promoter in these organisms
    • Gilinger G., Bellofatto V. Trypanosome spliced leader RNA genes contain the first identified RNA polymerase II gene promoter in these organisms. Nucleic Acids Res. 2001, 29:1556-1564.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 1556-1564
    • Gilinger, G.1    Bellofatto, V.2
  • 12
    • 42949127538 scopus 로고    scopus 로고
    • Different trans RNA splicing events in bloodstream and procyclic Trypanosoma brucei
    • Helm J.R., Wilson M.E., Donelson J.E. Different trans RNA splicing events in bloodstream and procyclic Trypanosoma brucei. Mol. Biochem. Parasitol. 2008, 159:134-137.
    • (2008) Mol. Biochem. Parasitol. , vol.159 , pp. 134-137
    • Helm, J.R.1    Wilson, M.E.2    Donelson, J.E.3
  • 13
    • 0025805653 scopus 로고
    • Maturation of polycistronic pre-mRNA in Trypanosoma brucei: analysis of trans splicing and poly(A) addition at nascent RNA transcripts from the hsp70 locus
    • Huang J., van der Ploeg L.H. Maturation of polycistronic pre-mRNA in Trypanosoma brucei: analysis of trans splicing and poly(A) addition at nascent RNA transcripts from the hsp70 locus. Mol. Cell. Biol. 1991, 11:3180-3190.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 3180-3190
    • Huang, J.1    van der Ploeg, L.H.2
  • 14
    • 34547623918 scopus 로고    scopus 로고
    • Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function
    • Isken O., Maquat L.E. Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function. Genes Dev. 2007, 21:1833-1856.
    • (2007) Genes Dev. , vol.21 , pp. 1833-1856
    • Isken, O.1    Maquat, L.E.2
  • 15
    • 77649284219 scopus 로고    scopus 로고
    • Essential role of a trypanosome U4-specific Sm core protein in small nuclear ribonucleoprotein assembly and splicing
    • Jaé N., Wang P., Gu T., Hühn M., Palfi Z., Urlaub H., Bindereif A. Essential role of a trypanosome U4-specific Sm core protein in small nuclear ribonucleoprotein assembly and splicing. Eukaryot. Cell 2010, 9:379-386.
    • (2010) Eukaryot. Cell , vol.9 , pp. 379-386
    • Jaé, N.1    Wang, P.2    Gu, T.3    Hühn, M.4    Palfi, Z.5    Urlaub, H.6    Bindereif, A.7
  • 16
    • 0033524941 scopus 로고    scopus 로고
    • Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs
    • Kambach C., Walke S., Young R., Avis J.M., de la Fortelle E., Raker V.A., Lührmann R., Li J., Nagai K. Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. Cell 1999, 96:375-387.
    • (1999) Cell , vol.96 , pp. 375-387
    • Kambach, C.1    Walke, S.2    Young, R.3    Avis, J.M.4    de la Fortelle, E.5    Raker, V.A.6    Lührmann, R.7    Li, J.8    Nagai, K.9
  • 17
    • 78149292214 scopus 로고    scopus 로고
    • The transcriptome of the human pathogen Trypanosoma brucei at single-nucleotide resolution
    • Kolev N.G., Franklin J.B., Carmi S., Shi H., Michaeli S., Tschudi C. The transcriptome of the human pathogen Trypanosoma brucei at single-nucleotide resolution. PLoS Pathog. 2010, 6:e1001090.
    • (2010) PLoS Pathog. , vol.6
    • Kolev, N.G.1    Franklin, J.B.2    Carmi, S.3    Shi, H.4    Michaeli, S.5    Tschudi, C.6
  • 18
    • 84855916545 scopus 로고    scopus 로고
    • Protein-RNA interactions: new genomic technologies and perspectives
    • König J., Zarnack K., Luscombe N.M., Ule J. Protein-RNA interactions: new genomic technologies and perspectives. Nat. Rev. Genet. 2012, 13:77-83.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 77-83
    • König, J.1    Zarnack, K.2    Luscombe, N.M.3    Ule, J.4
  • 19
    • 0023663191 scopus 로고
    • Controlled turnover and 3' trimming of the trans splicing precursor of Trypanosoma brucei
    • Laird P.W., ten Asbroek A.L., Borst P. Controlled turnover and 3' trimming of the trans splicing precursor of Trypanosoma brucei. Nucleic Acids Res. 1987, 15:10087-10103.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 10087-10103
    • Laird, P.W.1    ten Asbroek, A.L.2    Borst, P.3
  • 20
    • 0027193605 scopus 로고
    • Coupling of poly(A) site selection and trans-splicing in Leishmania
    • LeBowitz J.H., Smith H.Q., Rusche L., Beverley S.M. Coupling of poly(A) site selection and trans-splicing in Leishmania. Genes Dev. 1993, 7:996-1007.
    • (1993) Genes Dev. , vol.7 , pp. 996-1007
    • LeBowitz, J.H.1    Smith, H.Q.2    Rusche, L.3    Beverley, S.M.4
  • 21
    • 0030753073 scopus 로고    scopus 로고
    • The role of the cap structure in RNA processing and nuclear export
    • Lewis J.D., Izaurralde E. The role of the cap structure in RNA processing and nuclear export. Eur. J. Biochem. 1997, 247:461-469.
    • (1997) Eur. J. Biochem. , vol.247 , pp. 461-469
    • Lewis, J.D.1    Izaurralde, E.2
  • 23
    • 0038730932 scopus 로고    scopus 로고
    • Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region
    • Martínez-Calvillo S., Yan S., Nguyen D., Fox M., Stuart K., Myler P.J. Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region. Mol. Cell 2003, 11:1291-1299.
    • (2003) Mol. Cell , vol.11 , pp. 1291-1299
    • Martínez-Calvillo, S.1    Yan, S.2    Nguyen, D.3    Fox, M.4    Stuart, K.5    Myler, P.J.6
  • 24
    • 44449137369 scopus 로고    scopus 로고
    • Deciphering the assembly pathway of Sm-class U snRNPs
    • Neuenkirchen N., Chari A., Fischer U. Deciphering the assembly pathway of Sm-class U snRNPs. FEBS Lett. 2008, 582:1997-2003.
    • (2008) FEBS Lett. , vol.582 , pp. 1997-2003
    • Neuenkirchen, N.1    Chari, A.2    Fischer, U.3
  • 25
    • 75849145292 scopus 로고    scopus 로고
    • Expansion of the eukaryotic proteome by alternative splicing
    • Nilsen T.W., Graveley B.R. Expansion of the eukaryotic proteome by alternative splicing. Nature 2010, 463:457-463.
    • (2010) Nature , vol.463 , pp. 457-463
    • Nilsen, T.W.1    Graveley, B.R.2
  • 26
  • 28
    • 68549094444 scopus 로고    scopus 로고
    • Special Sm core complex functions in assembly of the U2 small nuclear ribonucleoprotein of Trypanosoma brucei
    • Preußer C., Palfi Z., Bindereif A. Special Sm core complex functions in assembly of the U2 small nuclear ribonucleoprotein of Trypanosoma brucei. Eukaryot. Cell 2009, 8:1228-1234.
    • (2009) Eukaryot. Cell , vol.8 , pp. 1228-1234
    • Preußer, C.1    Palfi, Z.2    Bindereif, A.3
  • 29
    • 84863178353 scopus 로고    scopus 로고
    • Dual targeting of isoleucyl-tRNA synthetase in Trypanosoma brucei is mediated through alternative trans-splicing
    • Rettig J., Wang Y., Schneider A., Ochsenreiter T. Dual targeting of isoleucyl-tRNA synthetase in Trypanosoma brucei is mediated through alternative trans-splicing. Nucleic Acids Res. 2012, 40:1299-1306.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 1299-1306
    • Rettig, J.1    Wang, Y.2    Schneider, A.3    Ochsenreiter, T.4
  • 30
    • 0028997105 scopus 로고
    • Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs
    • Séraphin B. Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs. EMBO J. 1995, 14:2089-2098.
    • (1995) EMBO J. , vol.14 , pp. 2089-2098
    • Séraphin, B.1
  • 32
    • 77956127684 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites
    • Siegel T.N., Hekstra D.R., Wang X., Dewell S., Cross G.A. Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites. Nucleic Acids Res. 2010, 38:4946-4957.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4946-4957
    • Siegel, T.N.1    Hekstra, D.R.2    Wang, X.3    Dewell, S.4    Cross, G.A.5
  • 33
    • 33845906382 scopus 로고    scopus 로고
    • Identification of novel snRNA-specific Sm proteins that bind selectively to U2 and U4 snRNAs in Trypanosoma brucei
    • Tkacz I.D., Lustig Y., Stern M.Z., Biton M., Salmon-Divon M., Das A., Bellofatto V., Michaeli S. Identification of novel snRNA-specific Sm proteins that bind selectively to U2 and U4 snRNAs in Trypanosoma brucei. RNA 2007, 13:30-43.
    • (2007) RNA , vol.13 , pp. 30-43
    • Tkacz, I.D.1    Lustig, Y.2    Stern, M.Z.3    Biton, M.4    Salmon-Divon, M.5    Das, A.6    Bellofatto, V.7    Michaeli, S.8
  • 35
    • 0025840610 scopus 로고
    • Trans splicing in trypanosomes requires methylation of the 5' end of the spliced leader RNA
    • Ullu E., Tschudi C. Trans splicing in trypanosomes requires methylation of the 5' end of the spliced leader RNA. Proc. Natl. Acad. Sci. U. S. A. 1991, 88:10074-10078.
    • (1991) Proc. Natl. Acad. Sci. U. S. A. , vol.88 , pp. 10074-10078
    • Ullu, E.1    Tschudi, C.2
  • 36
    • 0027498318 scopus 로고
    • Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts
    • Ullu E., Matthews K.R., Tschudi C. Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts. Mol. Cell. Biol. 1993, 13:720-725.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 720-725
    • Ullu, E.1    Matthews, K.R.2    Tschudi, C.3
  • 38
    • 33749324465 scopus 로고    scopus 로고
    • Sm core variation in spliceosomal small nuclear ribonucleoproteins from Trypanosoma brucei
    • Wang P., Palfi Z., Preusser C., Lücke S., Lane W.S., Kambach C., Bindereif A. Sm core variation in spliceosomal small nuclear ribonucleoproteins from Trypanosoma brucei. EMBO J. 2006, 25:4513-4523.
    • (2006) EMBO J. , vol.25 , pp. 4513-4523
    • Wang, P.1    Palfi, Z.2    Preusser, C.3    Lücke, S.4    Lane, W.S.5    Kambach, C.6    Bindereif, A.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.