-
1
-
-
0033569743
-
A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
-
Achsel T., Brahms H., Kastner B., Bachi A., Wilm M., Lührmann R. A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro. EMBO J. 1999, 18:5789-5802.
-
(1999)
EMBO J.
, vol.18
, pp. 5789-5802
-
-
Achsel, T.1
Brahms, H.2
Kastner, B.3
Bachi, A.4
Wilm, M.5
Lührmann, R.6
-
2
-
-
0026730321
-
Mass spectrometry of mRNA cap 4 from trypanosomatids reveals two novel nucleosides
-
Bangs J.D., Crain P.F., Hashizume F., McCloskey J.A., Boothroyd J.C. Mass spectrometry of mRNA cap 4 from trypanosomatids reveals two novel nucleosides. J. Biol. Chem. 1992, 267:9805-9815.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 9805-9815
-
-
Bangs, J.D.1
Crain, P.F.2
Hashizume, F.3
McCloskey, J.A.4
Boothroyd, J.C.5
-
3
-
-
22244441812
-
The genome of the African trypanosome Trypanosoma brucei
-
Berriman M., et al. The genome of the African trypanosome Trypanosoma brucei. Science 2005, 309:416-422.
-
(2005)
Science
, vol.309
, pp. 416-422
-
-
Berriman, M.1
-
4
-
-
0030273312
-
Nematode spliced leaders-ubiquity, evolution and utility
-
Blaxter M., Liu L. Nematode spliced leaders-ubiquity, evolution and utility. Int. J. Parasitol. 1996, 26:1025-1033.
-
(1996)
Int. J. Parasitol.
, vol.26
, pp. 1025-1033
-
-
Blaxter, M.1
Liu, L.2
-
5
-
-
0020352607
-
Transcripts coding for variant surface glycoproteins of Trypanosoma brucei have a short, identical exon at their 5' end
-
Boothroyd J.C., Cross G.A. Transcripts coding for variant surface glycoproteins of Trypanosoma brucei have a short, identical exon at their 5' end. Gene 1982, 20:281-289.
-
(1982)
Gene
, vol.20
, pp. 281-289
-
-
Boothroyd, J.C.1
Cross, G.A.2
-
6
-
-
0020338524
-
U2 RNA shares a structural domain with U1, U4, and U5 RNAs
-
Branlant C., Krol A., Ebel J.P., Lazar E., Haendler B., Jacob M. U2 RNA shares a structural domain with U1, U4, and U5 RNAs. EMBO J. 1982, 1:1259-1265.
-
(1982)
EMBO J.
, vol.1
, pp. 1259-1265
-
-
Branlant, C.1
Krol, A.2
Ebel, J.P.3
Lazar, E.4
Haendler, B.5
Jacob, M.6
-
7
-
-
0026440088
-
RNA polymerase I-mediated protein-coding gene expression in Trypanosoma brucei
-
Chung H.M., Lee G.S.M., van der Ploeg L.H.T. RNA polymerase I-mediated protein-coding gene expression in Trypanosoma brucei. Parasitol. Today 1992, 8:414-418.
-
(1992)
Parasitol. Today
, vol.8
, pp. 414-418
-
-
Chung, H.M.1
Lee, G.S.M.2
van der Ploeg, L.H.T.3
-
8
-
-
0030842141
-
Surprising diversity and distribution of spliced leader RNAs in flatworms
-
Davis R.E. Surprising diversity and distribution of spliced leader RNAs in flatworms. Mol. Biochem. Parasitol. 1997, 87:29-48.
-
(1997)
Mol. Biochem. Parasitol.
, vol.87
, pp. 29-48
-
-
Davis, R.E.1
-
9
-
-
0035094842
-
Characterization of a candidate Trypanosoma brucei U1 small nuclear RNA gene
-
Djikeng A., Ferreira L., D'Angelo M., Dolezal P., Lamb T., Murta S., Triggs V., Ulbert S., Villarino A., Renzi S., Ullu E., Tschudi C. Characterization of a candidate Trypanosoma brucei U1 small nuclear RNA gene. Mol. Biochem. Parasitol. 2001, 113:109-115.
-
(2001)
Mol. Biochem. Parasitol.
, vol.113
, pp. 109-115
-
-
Djikeng, A.1
Ferreira, L.2
D'Angelo, M.3
Dolezal, P.4
Lamb, T.5
Murta, S.6
Triggs, V.7
Ulbert, S.8
Villarino, A.9
Renzi, S.10
Ullu, E.11
Tschudi, C.12
-
10
-
-
10744232966
-
The sequence and analysis of Trypanosoma brucei chromosome II
-
El-Sayed N.M., et al. The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic Acids Res. 2003, 31:4856-4863.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4856-4863
-
-
El-Sayed, N.M.1
-
11
-
-
0035312534
-
Trypanosome spliced leader RNA genes contain the first identified RNA polymerase II gene promoter in these organisms
-
Gilinger G., Bellofatto V. Trypanosome spliced leader RNA genes contain the first identified RNA polymerase II gene promoter in these organisms. Nucleic Acids Res. 2001, 29:1556-1564.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1556-1564
-
-
Gilinger, G.1
Bellofatto, V.2
-
12
-
-
42949127538
-
Different trans RNA splicing events in bloodstream and procyclic Trypanosoma brucei
-
Helm J.R., Wilson M.E., Donelson J.E. Different trans RNA splicing events in bloodstream and procyclic Trypanosoma brucei. Mol. Biochem. Parasitol. 2008, 159:134-137.
-
(2008)
Mol. Biochem. Parasitol.
, vol.159
, pp. 134-137
-
-
Helm, J.R.1
Wilson, M.E.2
Donelson, J.E.3
-
13
-
-
0025805653
-
Maturation of polycistronic pre-mRNA in Trypanosoma brucei: analysis of trans splicing and poly(A) addition at nascent RNA transcripts from the hsp70 locus
-
Huang J., van der Ploeg L.H. Maturation of polycistronic pre-mRNA in Trypanosoma brucei: analysis of trans splicing and poly(A) addition at nascent RNA transcripts from the hsp70 locus. Mol. Cell. Biol. 1991, 11:3180-3190.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 3180-3190
-
-
Huang, J.1
van der Ploeg, L.H.2
-
14
-
-
34547623918
-
Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function
-
Isken O., Maquat L.E. Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function. Genes Dev. 2007, 21:1833-1856.
-
(2007)
Genes Dev.
, vol.21
, pp. 1833-1856
-
-
Isken, O.1
Maquat, L.E.2
-
15
-
-
77649284219
-
Essential role of a trypanosome U4-specific Sm core protein in small nuclear ribonucleoprotein assembly and splicing
-
Jaé N., Wang P., Gu T., Hühn M., Palfi Z., Urlaub H., Bindereif A. Essential role of a trypanosome U4-specific Sm core protein in small nuclear ribonucleoprotein assembly and splicing. Eukaryot. Cell 2010, 9:379-386.
-
(2010)
Eukaryot. Cell
, vol.9
, pp. 379-386
-
-
Jaé, N.1
Wang, P.2
Gu, T.3
Hühn, M.4
Palfi, Z.5
Urlaub, H.6
Bindereif, A.7
-
16
-
-
0033524941
-
Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs
-
Kambach C., Walke S., Young R., Avis J.M., de la Fortelle E., Raker V.A., Lührmann R., Li J., Nagai K. Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. Cell 1999, 96:375-387.
-
(1999)
Cell
, vol.96
, pp. 375-387
-
-
Kambach, C.1
Walke, S.2
Young, R.3
Avis, J.M.4
de la Fortelle, E.5
Raker, V.A.6
Lührmann, R.7
Li, J.8
Nagai, K.9
-
17
-
-
78149292214
-
The transcriptome of the human pathogen Trypanosoma brucei at single-nucleotide resolution
-
Kolev N.G., Franklin J.B., Carmi S., Shi H., Michaeli S., Tschudi C. The transcriptome of the human pathogen Trypanosoma brucei at single-nucleotide resolution. PLoS Pathog. 2010, 6:e1001090.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Kolev, N.G.1
Franklin, J.B.2
Carmi, S.3
Shi, H.4
Michaeli, S.5
Tschudi, C.6
-
18
-
-
84855916545
-
Protein-RNA interactions: new genomic technologies and perspectives
-
König J., Zarnack K., Luscombe N.M., Ule J. Protein-RNA interactions: new genomic technologies and perspectives. Nat. Rev. Genet. 2012, 13:77-83.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 77-83
-
-
König, J.1
Zarnack, K.2
Luscombe, N.M.3
Ule, J.4
-
19
-
-
0023663191
-
Controlled turnover and 3' trimming of the trans splicing precursor of Trypanosoma brucei
-
Laird P.W., ten Asbroek A.L., Borst P. Controlled turnover and 3' trimming of the trans splicing precursor of Trypanosoma brucei. Nucleic Acids Res. 1987, 15:10087-10103.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 10087-10103
-
-
Laird, P.W.1
ten Asbroek, A.L.2
Borst, P.3
-
20
-
-
0027193605
-
Coupling of poly(A) site selection and trans-splicing in Leishmania
-
LeBowitz J.H., Smith H.Q., Rusche L., Beverley S.M. Coupling of poly(A) site selection and trans-splicing in Leishmania. Genes Dev. 1993, 7:996-1007.
-
(1993)
Genes Dev.
, vol.7
, pp. 996-1007
-
-
LeBowitz, J.H.1
Smith, H.Q.2
Rusche, L.3
Beverley, S.M.4
-
21
-
-
0030753073
-
The role of the cap structure in RNA processing and nuclear export
-
Lewis J.D., Izaurralde E. The role of the cap structure in RNA processing and nuclear export. Eur. J. Biochem. 1997, 247:461-469.
-
(1997)
Eur. J. Biochem.
, vol.247
, pp. 461-469
-
-
Lewis, J.D.1
Izaurralde, E.2
-
22
-
-
0033983712
-
A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA
-
Mair G., Shi H., Li H., Djikeng A., Aviles H.O., Bishop J.R., Falcone F.H.C., Gavrilescu C., Montgomery J.L., Santori M.I., Stern L.S., Wang Z., Ullu E., Tschudi C. A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA. RNA 2000, 6:163-169.
-
(2000)
RNA
, vol.6
, pp. 163-169
-
-
Mair, G.1
Shi, H.2
Li, H.3
Djikeng, A.4
Aviles, H.O.5
Bishop, J.R.6
Falcone, F.H.C.7
Gavrilescu, C.8
Montgomery, J.L.9
Santori, M.I.10
Stern, L.S.11
Wang, Z.12
Ullu, E.13
Tschudi, C.14
-
23
-
-
0038730932
-
Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region
-
Martínez-Calvillo S., Yan S., Nguyen D., Fox M., Stuart K., Myler P.J. Transcription of Leishmania major Friedlin chromosome 1 initiates in both directions within a single region. Mol. Cell 2003, 11:1291-1299.
-
(2003)
Mol. Cell
, vol.11
, pp. 1291-1299
-
-
Martínez-Calvillo, S.1
Yan, S.2
Nguyen, D.3
Fox, M.4
Stuart, K.5
Myler, P.J.6
-
24
-
-
44449137369
-
Deciphering the assembly pathway of Sm-class U snRNPs
-
Neuenkirchen N., Chari A., Fischer U. Deciphering the assembly pathway of Sm-class U snRNPs. FEBS Lett. 2008, 582:1997-2003.
-
(2008)
FEBS Lett.
, vol.582
, pp. 1997-2003
-
-
Neuenkirchen, N.1
Chari, A.2
Fischer, U.3
-
25
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen T.W., Graveley B.R. Expansion of the eukaryotic proteome by alternative splicing. Nature 2010, 463:457-463.
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
26
-
-
77958123318
-
Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei
-
Nilsson D., Gunasekera K., Mani J., Osteras M., Farinelli L., Baerlocher L., Roditi I., Ochsenreiter T. Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei. PLoS Pathog. 2010, 6:e1001037.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Nilsson, D.1
Gunasekera, K.2
Mani, J.3
Osteras, M.4
Farinelli, L.5
Baerlocher, L.6
Roditi, I.7
Ochsenreiter, T.8
-
27
-
-
67650638601
-
SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes
-
Palfi Z., Jaé N., Preußer C., Kaminska K.H., Bujnicki J.M., Lee J.H., Günzl A., Kambach C., Urlaub H., Bindereif A. SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes. Genes Dev. 2009, 23:1650-1664.
-
(2009)
Genes Dev.
, vol.23
, pp. 1650-1664
-
-
Palfi, Z.1
Jaé, N.2
Preußer, C.3
Kaminska, K.H.4
Bujnicki, J.M.5
Lee, J.H.6
Günzl, A.7
Kambach, C.8
Urlaub, H.9
Bindereif, A.10
-
28
-
-
68549094444
-
Special Sm core complex functions in assembly of the U2 small nuclear ribonucleoprotein of Trypanosoma brucei
-
Preußer C., Palfi Z., Bindereif A. Special Sm core complex functions in assembly of the U2 small nuclear ribonucleoprotein of Trypanosoma brucei. Eukaryot. Cell 2009, 8:1228-1234.
-
(2009)
Eukaryot. Cell
, vol.8
, pp. 1228-1234
-
-
Preußer, C.1
Palfi, Z.2
Bindereif, A.3
-
29
-
-
84863178353
-
Dual targeting of isoleucyl-tRNA synthetase in Trypanosoma brucei is mediated through alternative trans-splicing
-
Rettig J., Wang Y., Schneider A., Ochsenreiter T. Dual targeting of isoleucyl-tRNA synthetase in Trypanosoma brucei is mediated through alternative trans-splicing. Nucleic Acids Res. 2012, 40:1299-1306.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1299-1306
-
-
Rettig, J.1
Wang, Y.2
Schneider, A.3
Ochsenreiter, T.4
-
30
-
-
0028997105
-
Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs
-
Séraphin B. Sm and Sm-like proteins belong to a large family: identification of proteins of the U6 as well as the U1, U2, U4 and U5 snRNPs. EMBO J. 1995, 14:2089-2098.
-
(1995)
EMBO J.
, vol.14
, pp. 2089-2098
-
-
Séraphin, B.1
-
31
-
-
65449138352
-
Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei
-
Siegel T.N., Hekstra D.R., Kemp L.E., Figueiredo L.M., Lowell J.E., Fenyo D., Wang X., Dewell S., Cross G.A. Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei. Genes Dev. 2009, 23:1063-1076.
-
(2009)
Genes Dev.
, vol.23
, pp. 1063-1076
-
-
Siegel, T.N.1
Hekstra, D.R.2
Kemp, L.E.3
Figueiredo, L.M.4
Lowell, J.E.5
Fenyo, D.6
Wang, X.7
Dewell, S.8
Cross, G.A.9
-
32
-
-
77956127684
-
Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites
-
Siegel T.N., Hekstra D.R., Wang X., Dewell S., Cross G.A. Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites. Nucleic Acids Res. 2010, 38:4946-4957.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 4946-4957
-
-
Siegel, T.N.1
Hekstra, D.R.2
Wang, X.3
Dewell, S.4
Cross, G.A.5
-
33
-
-
33845906382
-
Identification of novel snRNA-specific Sm proteins that bind selectively to U2 and U4 snRNAs in Trypanosoma brucei
-
Tkacz I.D., Lustig Y., Stern M.Z., Biton M., Salmon-Divon M., Das A., Bellofatto V., Michaeli S. Identification of novel snRNA-specific Sm proteins that bind selectively to U2 and U4 snRNAs in Trypanosoma brucei. RNA 2007, 13:30-43.
-
(2007)
RNA
, vol.13
, pp. 30-43
-
-
Tkacz, I.D.1
Lustig, Y.2
Stern, M.Z.3
Biton, M.4
Salmon-Divon, M.5
Das, A.6
Bellofatto, V.7
Michaeli, S.8
-
34
-
-
77956232706
-
Analysis of spliceosomal proteins in Trypanosomatids reveals novel functions in mRNA processing
-
Tkacz I.D., Gupta S.K., Volkov V., Romano M., Haham T., Tulinski P., Lebenthal I., Michaeli S. Analysis of spliceosomal proteins in Trypanosomatids reveals novel functions in mRNA processing. J. Biol. Chem. 2010, 285:27982-27999.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 27982-27999
-
-
Tkacz, I.D.1
Gupta, S.K.2
Volkov, V.3
Romano, M.4
Haham, T.5
Tulinski, P.6
Lebenthal, I.7
Michaeli, S.8
-
35
-
-
0025840610
-
Trans splicing in trypanosomes requires methylation of the 5' end of the spliced leader RNA
-
Ullu E., Tschudi C. Trans splicing in trypanosomes requires methylation of the 5' end of the spliced leader RNA. Proc. Natl. Acad. Sci. U. S. A. 1991, 88:10074-10078.
-
(1991)
Proc. Natl. Acad. Sci. U. S. A.
, vol.88
, pp. 10074-10078
-
-
Ullu, E.1
Tschudi, C.2
-
36
-
-
0027498318
-
Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts
-
Ullu E., Matthews K.R., Tschudi C. Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts. Mol. Cell. Biol. 1993, 13:720-725.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 720-725
-
-
Ullu, E.1
Matthews, K.R.2
Tschudi, C.3
-
37
-
-
0020490764
-
RNA splicing is required to make the messenger RNA for a variant surface antigen in trypanosomes
-
van der Ploeg L.H., Liu A.Y., Michels P.A., de Lange T., Borst P., Majumder H.K., Weber H., Veeneman G.H., van Boom J. RNA splicing is required to make the messenger RNA for a variant surface antigen in trypanosomes. Nucleic Acids Res. 1982, 10:3591-3604.
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 3591-3604
-
-
van der Ploeg, L.H.1
Liu, A.Y.2
Michels, P.A.3
de Lange, T.4
Borst, P.5
Majumder, H.K.6
Weber, H.7
Veeneman, G.H.8
van Boom, J.9
-
38
-
-
33749324465
-
Sm core variation in spliceosomal small nuclear ribonucleoproteins from Trypanosoma brucei
-
Wang P., Palfi Z., Preusser C., Lücke S., Lane W.S., Kambach C., Bindereif A. Sm core variation in spliceosomal small nuclear ribonucleoproteins from Trypanosoma brucei. EMBO J. 2006, 25:4513-4523.
-
(2006)
EMBO J.
, vol.25
, pp. 4513-4523
-
-
Wang, P.1
Palfi, Z.2
Preusser, C.3
Lücke, S.4
Lane, W.S.5
Kambach, C.6
Bindereif, A.7
|