Risk map and spatial determinants of pancreas disease in the marine phase of Norwegian Atlantic salmon farming sites

BMC Veterinary Research

Volumn 8, Issue , 2012, Pages

  Tavornpanich, Saraya ^a   Paul, Mathilde ^b   Viljugrein, Hildegunn ^a,c   Abrial, David ^d   Jimenez, Daniel ^a   Brun, Edgar ^a  

^a NORWEGIAN VETERINARY INSTITUTE   (Norway)

^b CIRAD   (France)

^c UNIVERSITY OF OSLO   (Norway)

^d EPIA   (France)

Author keywords

Aquatic epidemiology; Bayesian modeling; Disease mapping; Pancreas disease; Spatial analysis

Indexed keywords

ANIMALIA; SALMO SALAR;

ANIMAL; ANIMAL DISEASE; AQUACULTURE; ARTICLE; ATLANTIC SALMON; BAYES THEOREM; BIOLOGICAL MODEL; FISH DISEASE; MULTIVARIATE ANALYSIS; NORWAY; PANCREAS DISEASE; REPRODUCIBILITY; RISK FACTOR; SEA; SENSITIVITY AND SPECIFICITY; STATISTICAL MODEL;

ANIMALS; AQUACULTURE; BAYES THEOREM; FISH DISEASES; MODELS, BIOLOGICAL; MODELS, STATISTICAL; MULTIVARIATE ANALYSIS; NORWAY; OCEANS AND SEAS; PANCREATIC DISEASES; REPRODUCIBILITY OF RESULTS; RISK FACTORS; SALMO SALAR; SENSITIVITY AND SPECIFICITY;

EID: 84866522322     PISSN: None     EISSN: 17466148     Source Type: Journal    
DOI: 10.1186/1746-6148-8-172     Document Type: Article

References (35)

1. Taksdal T, Olsen AB, Bjerkås I, Hjortaas MJ, Dannevig BH, Graham DA, McLoughlin MF. Pancreas disease in farmed Atlantic salmon, Salmo salar L., and rainbow trout, Oncorhynchus mykiss (Walbaum) in Norway. J Fish Dis 2007, 30:545-558. 10.1111/j.1365-2761.2007.00845.x, 17718709.
2. Graham DA, Frost P, McLoughlin K, Rowley HM, Gabestad I, Gordon A, McLoughlin MF. A comparative study of marine salmonid alphavirus subtype 1-6 using an experimental cohabitation challenge model. J Fish Dis 2011, 33:123-135.
3. Aunsmo A, Valle PS, Sandberg M, Midtlyng PJ, Bruheim T. Stochastic modeling of direct costs of pancreas disease (PD) in Norwegian farmed Atlantic salmon (Salmo salar L.). Prev Vet Med 2010, 93:233-241. 10.1016/j.prevetmed.2009.10.001, 19931201.
4. Poppe T, Rimstad E, Hyllseth B. Pancreas disease of Atlantic salmon Salmo salar L. post-smolts infected with infectious pancreatic necrosis virus (IPNV). Bull Euro Asso Fish Pathol 1989, 9:83-85.
5. McLoughlin MF, Peeler EJ, Foyle KL, Rodger H, O'Ceallachain D, Geoghegan F. An epidemiological investigation of the re-emergence of pancreas disease in Irish farmed atlantic salmon (Salmo salar L.) in 2002. Marine Environment and Health Series 2003, 14:1-14.
6. McLoughlin MF, Graham DA. Alphavirus infections in salmonids - a review. J Fish Dis 2007, 33:511-531.
7. Kristoffersen AB, Viljugrein H, Kongtorp RT, Brun E, Jansen PA. Risk factors for pancreas disease (PD) outbreaks in farmed Atlantic salmon and rainbow trout in Norway during 2003-2007. Prev Vet Med 2009, 90:127-136. 10.1016/j.prevetmed.2009.04.003, 19419787.
8. Fringuelli E, Rowley HM, Wilson JC, Hunter R, Rodger H, Graham DA. Phylogenetic analyses and molecular epidemiology of European salmonid alphaviruses (SAV) based on partial E2 and nsP3 gene nucleotide sequences. J Fish Dis 2008, 31:811-823. 10.1111/j.1365-2761.2008.00944.x, 18681902.
9. Viljugrein H, Staalstrøm A, Molvær J, Urke HA, Jansen PA. Integration of hydrodynamics into a statistical model on the spread of pancreas disease (PD) in salmon farming. Dis Aquat Organ 2009, 88:35-44.
10. Kongtorp RT, Stene A, Andreassen PA, Aspehaug V, Graham DA, Lyngstad TM, Olsen AB, Olsen RS, Sandberg M, Santi N, Wallace C, Breck O. Lack of evidence for vertical transmission of SAV 3 using gametes of Atlantic salmon, Salmo salar L., exposed by natural and experimental routes. J Fish Dis 2010, 33:879-888. 10.1111/j.1365-2761.2010.01190.x, 21039607.
11. Jansen MD, Taksdal T, Wasmuth MA, Gjerset B, Brun E, Olsen AB, Breck O, Sandberg M. Salmonid alphavirus (SAV) and pancreas disease (PD) in Atlantic salmon, Salmo salar L., in freshwater and seawater sites in Norway from 2006 to 2008. Prev Vet Med 2010, 33:391-402.
12. Anonymous. Norwegian PD regulations 2007-11-20 number 1315 regulations relating to zone to prevent infection and fight pancreas disease in aquaculture 2008, Norwegian: PD regulations 2008-06-17 number 819: regulations relating to the sale of aquaculture animals and products of aquaculture animals, Anonymous. Norwegian PD regulations 2007-11-20 number 1315.
13. Stene A, Viljugren H, Jansen P-A. Transmission of SAV3 by water transport? Current patterns and infection pressure between farms 2011, Belfast: PD-trination meeting.
14. Aldrin M, Storvik B, Frigessi A, Viljugrein H, Jansen PA. A stochastic model for the assessment of the transmission pathways of heart and skeleton muscle inflammation, pancreas disease and infectious salmon anemia in marine fish farms in Norway. Prev Vet Med 2010, 93:51-61. 10.1016/j.prevetmed.2009.09.010, 19811843.
15. Jansen PA, Kristoffersen AB, Viljugrein H, Jimenez D, Aldrin M, Stien A. Sea lice as a density dependent constraint to salmonid farming. Proc R S B 2012, . published online. 1-9.
16. Lunn DJ, Thomas A, Best N, Spiegelhalter DJ. WinBUGS - a Bayesian modelling framework: concepts, structure, and extensibility. Stat Comput 2000, 10:325-337.
17. Spiegelhalter DJ, Best N, Carlin BP, Van Der Linde A. Bayesian measures of model complexity and fit. J R Stat Soc Series B Stat Methodol 2002, 64:583-639.
18. Dormann CF, McPherson JM, Araujo MB, Bivand R, Bolliger J, Carl G, Davies RG, Hirzel A, Jetz W, Kissling WD, Kuhn I, Ohlemuller R, Peres-Neto PR, Reineking B, Schroder B, Schurr FM, Wilson R. Methods to account for spatial autocorrelation in the analysis of species distribution data: a review. Ecography 2007, 30:609-628.
19. Diggle PJ, Ribeiro PJ. Model-based Geostatistics 2007, Springer, New York, USA: Springer Series in Statistics.
20. Pfeiffer DU, Robinson TP, Stevenson M, Stevens KB, Rogers DJ, Clements ACA. Spatial Analysis in Epidemiology 2008, New York: Oxford University Press.
21. Pullan RL, Kabatereine NB, Bukirwa H, Staedke SG, Brooker S. Heterogeneities and Consequences of Plasmodium Species and Hookworm Coinfection: a Population Based Study in Uganda. J Infect Dis 2011, 203:406-417. 10.1093/infdis/jiq063, 3038339,3038339, 21187338.
22. Besag J, York J, Mollié A. Bayesian image restoration, with two applications in spatial statistics. Ann Inst Stat Math 1991, 43:1-59.
23. Mollié A. From Bayesian and Empirical Bayes approaches to disease mapping. Disease mapping and risk assessment for public health 1999, 15-29. Chichester, UK: John Wiley & Sons Ltd, Lawson A, Biggeri A, Bohning D, Lesaffre E, Viel JF, Bertollini R.
24. Greiner M, Pfeiffer D, Smith RD. Principles and practical application of the receiver-operating characteristic analysis for diagnostic tests. Prev Vet Med 2000, 45:23-41. 10.1016/S0167-5877(00)00115-X, 10802332.
25. Fosgate GT, Adesiyun AA, Herd DW, Johnson WO, Hietala SK, Schurig GG, Ryan J. Estimation of receiver-operating characteristic curves to determine accuracy of a competitive enzyme-linked immunosorbent assay for the serodiagnosis of Brucella infection in domestic water buffalo (Bubalus bubalis) and cattle. Am J Vet Res 2003, 64:57-64. 10.2460/ajvr.2003.64.57, 12518879.
26. Pontius RG, Schneider LC. Land-cover change model validation by an ROC method for the Ipswich watershed, Massachusetts, USA. Agric Ecosyst Environ 2001, 85:239-248.
27. Arekhi S. Modelling spatial pattern of deforestation using GIS and logistic regression: a case study of northern llam forests, llam province, Iran. Afr J Biotechnol 2011, 10:16236-16249.
28. Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez J-C, Müller M. pROC: an open-source package for R and S + to analyze and compare ROC curves. BMC Bioinforma 2011, 12:77.
29. Karlsen M, Tingbø T, Solbakk I, Evensen T, Furevik A, Aas-Eng A. Efficacy and safety of an inactivated vaccine against Salmonid alphavirus (family Togaviridae). Journal of Vaccines 2012, In press.
30. Graham DA, Staples C, Wilson CJ, Jewhurst H, Cherry K, Gordon A, Rowley HM. Biophysical properties of salmonid alphaviruses: influence of temperature and pH on virus survival. J Fish Dis 2007, 30:533-543. 10.1111/j.1365-2761.2007.00811.x, 17718708.
31. Wheatly SB, McLaughlin MF, Menzies FD, Goodall EA. Site management factors influencing mortality rates in Atlantic salmon (Salmo salar L.) during marine production. Aquaculture 1995, 136:195-207.
32. Rodge H, Mitchell S. Epidemiological observations of pancreas disease of farmed Atlantic salmon, Salmo salar L., in Ireland. J Fish Dis 2007, 30:157-167. 10.1111/j.1365-2761.2007.00799.x, 17352791.
33. Muller EJ, Taylor NG. The application of epidemiology in aquatic animal health-opportunities and challenges. Vet Res 2011, 42:94. 10.1186/1297-9716-42-94, 3182899, 21834990.
34. Firestone SM, Christley RM, Ward MP, Dhand NK. Adding the spatial dimension to the social network analysis of an epidemic: investigation of the 2007 outbreak of equine influenza in Australia. Prev Vet Med 2012, In press.
35. Torabi M, Rosychuk RJ. Hierarchical Bayesian Spatiotemporal Analysis of Childhood Cancer Trends. Geogr Anal 2012, 44:109-120.