-
1
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature 2005, 437:1173-1178.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
-
2
-
-
33744972290
-
A gene-centered C. elegans protein-DNA interaction network
-
Deplancke B, Mukhopadhyay A, Ao W, Elewa AM, Grove CA, Martinez NJ, Sequerra R, Doucette-Stamm L, Reece-Hoyes JS, Hope IA, et al. A gene-centered C. elegans protein-DNA interaction network. Cell 2006, 125:1193-1205.
-
(2006)
Cell
, vol.125
, pp. 1193-1205
-
-
Deplancke, B.1
Mukhopadhyay, A.2
Ao, W.3
Elewa, A.M.4
Grove, C.A.5
Martinez, N.J.6
Sequerra, R.7
Doucette-Stamm, L.8
Reece-Hoyes, J.S.9
Hope, I.A.10
-
3
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Ro DK, Paradise EM, Ouellet M, Fisher KJ, Newman KL, Ndungu JM, Ho KA, Eachus RA, Ham TS, Kirby J, et al. Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 2006, 440:940-943.
-
(2006)
Nature
, vol.440
, pp. 940-943
-
-
Ro, D.K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
-
4
-
-
0033676098
-
DNA cloning using in vitro site-specific recombination
-
Hartley JL, Temple GF, Brasch MA. DNA cloning using in vitro site-specific recombination. Genome Res 2000, 10:1788-1795.
-
(2000)
Genome Res
, vol.10
, pp. 1788-1795
-
-
Hartley, J.L.1
Temple, G.F.2
Brasch, M.A.3
-
5
-
-
37249078168
-
Building blocks for plant gene assembly
-
Karimi M, Bleys A, Vanderhaeghen R, Hilson P. Building blocks for plant gene assembly. Plant Physiol 2007, 145:1183-1191.
-
(2007)
Plant Physiol
, vol.145
, pp. 1183-1191
-
-
Karimi, M.1
Bleys, A.2
Vanderhaeghen, R.3
Hilson, P.4
-
6
-
-
80052585797
-
A gateway multisite recombination cloning toolkit
-
Petersen LK, Stowers RS. A gateway multisite recombination cloning toolkit. PLoS One 2011, 6:e24531.
-
(2011)
PLoS One
, vol.6
-
-
Petersen, L.K.1
Stowers, R.S.2
-
7
-
-
36448963734
-
The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs
-
Kwan KM, Fujimoto E, Grabher C, Mangum BD, Hardy ME, Campbell DS, Parant JM, Yost HJ, Kanki JP, Chien CB. The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs. Developmental dynamics: an official publication of the American Association of Anatomists 2007, 236:3088-3099.
-
(2007)
Developmental dynamics: an official publication of the American Association of Anatomists
, vol.236
, pp. 3088-3099
-
-
Kwan, K.M.1
Fujimoto, E.2
Grabher, C.3
Mangum, B.D.4
Hardy, M.E.5
Campbell, D.S.6
Parant, J.M.7
Yost, H.J.8
Kanki, J.P.9
Chien, C.B.10
-
8
-
-
54349127144
-
Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5
-
Benhamed M, Martin-Magniette ML, Taconnat L, Bitton F, Servet C, De Clercq R, De Meyer B, Buysschaert C, Rombauts S, Villarroel R, et al. Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. The Plant journal: for cell and molecular biology 2008, 56:493-504.
-
(2008)
The Plant journal: for cell and molecular biology
, vol.56
, pp. 493-504
-
-
Benhamed, M.1
Martin-Magniette, M.L.2
Taconnat, L.3
Bitton, F.4
Servet, C.5
De Clercq, R.6
De Meyer, B.7
Buysschaert, C.8
Rombauts, S.9
Villarroel, R.10
-
9
-
-
53149142072
-
Boosting tandem affinity purification of plant protein complexes
-
Van Leene J, Witters E, Inzé D, De Jaeger G. Boosting tandem affinity purification of plant protein complexes. Trends in plant science 2008, 13:517-520.
-
(2008)
Trends in plant science
, vol.13
, pp. 517-520
-
-
Van Leene, J.1
Witters, E.2
Inzé, D.3
De Jaeger, G.4
-
10
-
-
34547137389
-
A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana
-
Van Leene J, Stals H, Eeckhout D, Persiau G, Van De Slijke E, Van Isterdael G, De Clercq A, Bonnet E, Laukens K, Remmerie N, et al. A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana. Molecular & cellular proteomics: MCP 2007, 6:1226-1238.
-
(2007)
Molecular & cellular proteomics: MCP
, vol.6
, pp. 1226-1238
-
-
Van Leene, J.1
Stals, H.2
Eeckhout, D.3
Persiau, G.4
Van De Slijke, E.5
Van Isterdael, G.6
De Clercq, A.7
Bonnet, E.8
Laukens, K.9
Remmerie, N.10
-
11
-
-
33751211249
-
An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells
-
Burckstummer T, Bennett KL, Preradovic A, Schutze G, Hantschel O, Superti-Furga G, Bauch A. An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells. Nature methods 2006, 3:1013-1019.
-
(2006)
Nature methods
, vol.3
, pp. 1013-1019
-
-
Burckstummer, T.1
Bennett, K.L.2
Preradovic, A.3
Schutze, G.4
Hantschel, O.5
Superti-Furga, G.6
Bauch, A.7
-
12
-
-
7444222895
-
Generation of the Brucella melitensis ORFeome version 1.1
-
Dricot A, Rual JF, Lamesch P, Bertin N, Dupuy D, Hao T, Lambert C, Hallez R, Delroisse JM, Vandenhaute J, et al. Generation of the Brucella melitensis ORFeome version 1.1. Genome Res 2004, 14:2201-2206.
-
(2004)
Genome Res
, vol.14
, pp. 2201-2206
-
-
Dricot, A.1
Rual, J.F.2
Lamesch, P.3
Bertin, N.4
Dupuy, D.5
Hao, T.6
Lambert, C.7
Hallez, R.8
Delroisse, J.M.9
Vandenhaute, J.10
-
13
-
-
7444271985
-
The Pseudomonas aeruginosa PA01 gene collection
-
Labaer J, Qiu Q, Anumanthan A, Mar W, Zuo D, Murthy TV, Taycher H, Halleck A, Hainsworth E, Lory S, Brizuela L. The Pseudomonas aeruginosa PA01 gene collection. Genome Res 2004, 14:2190-2200.
-
(2004)
Genome Res
, vol.14
, pp. 2190-2200
-
-
Labaer, J.1
Qiu, Q.2
Anumanthan, A.3
Mar, W.4
Zuo, D.5
Murthy, T.V.6
Taycher, H.7
Halleck, A.8
Hainsworth, E.9
Lory, S.10
Brizuela, L.11
-
14
-
-
84870843809
-
Pathogen functional genomics resource center
-
Pathogen functional genomics resource center. http://pfgrc.jcvi.org/.
-
-
-
-
15
-
-
84870803883
-
The ORFeome collaboration
-
The ORFeome collaboration. http://www.orfeomecollaboration.org/.
-
-
-
-
16
-
-
84870839116
-
ATOME 1 and ATOME 2
-
ATOME 1 and ATOME 2. http://www-urgv.versailles.inra.fr/atome/index.htm.
-
-
-
-
17
-
-
58449094652
-
GRASSIUS: a platform for comparative regulatory genomics across the grasses
-
Yilmaz A, Nishiyama MY, Fuentes BG, Souza GM, Janies D, Gray J, Grotewold E. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant physiology 2009, 149:171-180.
-
(2009)
Plant physiology
, vol.149
, pp. 171-180
-
-
Yilmaz, A.1
Nishiyama, M.Y.2
Fuentes, B.G.3
Souza, G.M.4
Janies, D.5
Gray, J.6
Grotewold, E.7
-
18
-
-
35148862429
-
Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome
-
von Brunn A, Teepe C, Simpson JC, Pepperkok R, Friedel CC, Zimmer R, Roberts R, Baric R, Haas J. Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome. PloS one 2007, 2:e459.
-
(2007)
PloS one
, vol.2
-
-
von Brunn, A.1
Teepe, C.2
Simpson, J.C.3
Pepperkok, R.4
Friedel, C.C.5
Zimmer, R.6
Roberts, R.7
Baric, R.8
Haas, J.9
-
19
-
-
28444478789
-
Biochemical and genetic analysis of the yeast proteome with a movable ORF collection
-
Gelperin DM, White MA, Wilkinson ML, Kon Y, Kung LA, Wise KJ, Lopez-Hoyo N, Jiang L, Piccirillo S, Yu H, et al. Biochemical and genetic analysis of the yeast proteome with a movable ORF collection. Genes & development 2005, 19:2816-2826.
-
(2005)
Genes & development
, vol.19
, pp. 2816-2826
-
-
Gelperin, D.M.1
White, M.A.2
Wilkinson, M.L.3
Kon, Y.4
Kung, L.A.5
Wise, K.J.6
Lopez-Hoyo, N.7
Jiang, L.8
Piccirillo, S.9
Yu, H.10
-
20
-
-
33746112995
-
ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe
-
Matsuyama A, Arai R, Yashiroda Y, Shirai A, Kamata A, Sekido S, Kobayashi Y, Hashimoto A, Hamamoto M, Hiraoka Y, et al. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nature biotechnology 2006, 24:841-847.
-
(2006)
Nature biotechnology
, vol.24
, pp. 841-847
-
-
Matsuyama, A.1
Arai, R.2
Yashiroda, Y.3
Shirai, A.4
Kamata, A.5
Sekido, S.6
Kobayashi, Y.7
Hashimoto, A.8
Hamamoto, M.9
Hiraoka, Y.10
-
21
-
-
25644449546
-
Expression capable library for studies of Neisseria gonorrhoeae, version 1.0
-
Brettin T, Altherr MR, Du Y, Mason RM, Friedrich A, Potter L, Langford C, Keller TJ, Jens J, Howie H, et al. Expression capable library for studies of Neisseria gonorrhoeae, version 1.0. BMC microbiology 2005, 5:50.
-
(2005)
BMC microbiology
, vol.5
, pp. 50
-
-
Brettin, T.1
Altherr, M.R.2
Du, Y.3
Mason, R.M.4
Friedrich, A.5
Potter, L.6
Langford, C.7
Keller, T.J.8
Jens, J.9
Howie, H.10
-
22
-
-
26844432237
-
Development of a functional genomics platform for Sinorhizobium meliloti: construction of an ORFeome
-
Schroeder BK, House BL, Mortimer MW, Yurgel SN, Maloney SC, Ward KL, Kahn ML. Development of a functional genomics platform for Sinorhizobium meliloti: construction of an ORFeome. Applied and environmental microbiology 2005, 71:5858-5864.
-
(2005)
Applied and environmental microbiology
, vol.71
, pp. 5858-5864
-
-
Schroeder, B.K.1
House, B.L.2
Mortimer, M.W.3
Yurgel, S.N.4
Maloney, S.C.5
Ward, K.L.6
Kahn, M.L.7
-
23
-
-
55549117151
-
Hepatitis C virus infection protein network
-
de Chassey B, Navratil V, Tafforeau L, Hiet MS, Aublin-Gex A, Agaugue S, Meiffren G, Pradezynski F, Faria BF, Chantier T, et al. Hepatitis C virus infection protein network. Molecular systems biology 2008, 4:230.
-
(2008)
Molecular systems biology
, vol.4
, pp. 230
-
-
de Chassey, B.1
Navratil, V.2
Tafforeau, L.3
Hiet, M.S.4
Aublin-Gex, A.5
Agaugue, S.6
Meiffren, G.7
Pradezynski, F.8
Faria, B.F.9
Chantier, T.10
-
24
-
-
7444220617
-
C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions
-
Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, Vidal M. C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions. Genome research 2004, 14:2064-2069.
-
(2004)
Genome research
, vol.14
, pp. 2064-2069
-
-
Lamesch, P.1
Milstein, S.2
Hao, T.3
Rosenberg, J.4
Li, N.5
Sequerra, R.6
Bosak, S.7
Doucette-Stamm, L.8
Vandenhaute, J.9
Hill, D.E.10
Vidal, M.11
-
25
-
-
0038708337
-
C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression
-
Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, et al. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Nature genetics 2003, 34:35-41.
-
(2003)
Nature genetics
, vol.34
, pp. 35-41
-
-
Reboul, J.1
Vaglio, P.2
Rual, J.F.3
Lamesch, P.4
Martinez, M.5
Armstrong, C.M.6
Li, S.7
Jacotot, L.8
Bertin, N.9
Janky, R.10
-
26
-
-
77955342525
-
The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology
-
Rajagopala SV, Yamamoto N, Zweifel AE, Nakamichi T, Huang HK, Mendez-Rios JD, Franca-Koh J, Boorgula MP, Fujita K, Suzuki K, et al. The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology. BMC genomics 2010, 11:470.
-
(2010)
BMC genomics
, vol.11
, pp. 470
-
-
Rajagopala, S.V.1
Yamamoto, N.2
Zweifel, A.E.3
Nakamichi, T.4
Huang, H.K.5
Mendez-Rios, J.D.6
Franca-Koh, J.7
Boorgula, M.P.8
Fujita, K.9
Suzuki, K.10
-
27
-
-
62749155708
-
An Entry/Gateway cloning system for general expression of genes with molecular tags in Drosophila melanogaster
-
Akbari OS, Oliver D, Eyer K, Pai CY. An Entry/Gateway cloning system for general expression of genes with molecular tags in Drosophila melanogaster. BMC cell biology 2009, 10:8.
-
(2009)
BMC cell biology
, vol.10
, pp. 8
-
-
Akbari, O.S.1
Oliver, D.2
Eyer, K.3
Pai, C.Y.4
-
28
-
-
37249087896
-
Recombinational cloning with plant gateway vectors
-
Karimi M, Depicker A, Hilson P. Recombinational cloning with plant gateway vectors. Plant physiology 2007, 145:1144-1154.
-
(2007)
Plant physiology
, vol.145
, pp. 1144-1154
-
-
Karimi, M.1
Depicker, A.2
Hilson, P.3
-
29
-
-
35448952987
-
Construction and evaluation of multisite recombinatorial (Gateway) cloning vectors for Gram-positive bacteria
-
Perehinec TM, Qazi SN, Gaddipati SR, Salisbury V, Rees CE, Hill PJ. Construction and evaluation of multisite recombinatorial (Gateway) cloning vectors for Gram-positive bacteria. BMC molecular biology 2007, 8:80.
-
(2007)
BMC molecular biology
, vol.8
, pp. 80
-
-
Perehinec, T.M.1
Qazi, S.N.2
Gaddipati, S.R.3
Salisbury, V.4
Rees, C.E.5
Hill, P.J.6
-
30
-
-
7444236455
-
Concerted assembly and cloning of multiple DNA segments using in vitro site-specific recombination: functional analysis of multi-segment expression clones
-
Cheo DL, Titus SA, Byrd DRN, Hartley JL, Temple GF, Brasch MA. Concerted assembly and cloning of multiple DNA segments using in vitro site-specific recombination: functional analysis of multi-segment expression clones. Genome research 2004, 14:2111-2120.
-
(2004)
Genome research
, vol.14
, pp. 2111-2120
-
-
Cheo, D.L.1
Titus, S.A.2
Byrd, D.R.N.3
Hartley, J.L.4
Temple, G.F.5
Brasch, M.A.6
-
31
-
-
35349022993
-
A suite of gateway cloning vectors for high-throughput genetic analysis in Saccharomyces cerevisiae
-
Alberti S, Gitler AD, Lindquist S. A suite of gateway cloning vectors for high-throughput genetic analysis in Saccharomyces cerevisiae. Yeast 2007, 24:913-919.
-
(2007)
Yeast
, vol.24
, pp. 913-919
-
-
Alberti, S.1
Gitler, A.D.2
Lindquist, S.3
-
32
-
-
72449134454
-
A simple, flexible and efficient PCR-fusion/Gateway cloning procedure for gene fusion, site-directed mutagenesis, short sequence insertion and domain deletions and swaps
-
Atanassov II, Etchells JP, Turner SR. A simple, flexible and efficient PCR-fusion/Gateway cloning procedure for gene fusion, site-directed mutagenesis, short sequence insertion and domain deletions and swaps. Plant methods 2009, 5:14.
-
(2009)
Plant methods
, vol.5
, pp. 14
-
-
Atanassov, I.I.1
Etchells, J.P.2
Turner, S.R.3
-
33
-
-
77950439369
-
NINJA connects the co-repressor TOPLESS to jasmonate signalling
-
Pauwels L, Barbero GF, Geerinck J, Tilleman S, Grunewald W, Perez AC, Chico JM, Vanden Bossche R, Sewell J, Gil E, et al. NINJA connects the co-repressor TOPLESS to jasmonate signalling. Nature 2010, 464:788-791.
-
(2010)
Nature
, vol.464
, pp. 788-791
-
-
Pauwels, L.1
Barbero, G.F.2
Geerinck, J.3
Tilleman, S.4
Grunewald, W.5
Perez, A.C.6
Chico, J.M.7
Vanden Bossche, R.8
Sewell, J.9
Gil, E.10
-
34
-
-
84855254094
-
The TOPLESS interactome: a framework for gene repression in Arabidopsis
-
Causier B, Ashworth M, Guo W, Davies B. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Plant physiology 2012, 158:423-438.
-
(2012)
Plant physiology
, vol.158
, pp. 423-438
-
-
Causier, B.1
Ashworth, M.2
Guo, W.3
Davies, B.4
-
35
-
-
80055012555
-
The JAZ proteins: a crucial interface in the Jasmonate signaling cascade
-
Pauwels L, Goossens A. The JAZ proteins: a crucial interface in the Jasmonate signaling cascade. The Plant cell 2011, 23:3089-3100.
-
(2011)
The Plant cell
, vol.23
, pp. 3089-3100
-
-
Pauwels, L.1
Goossens, A.2
-
36
-
-
84859010589
-
JAZ8 lacks a canonical degron and has an EAR motif that mediates transcriptional repression of jasmonate responses in Arabidopsis
-
Shyu C, Figueroa P, Depew CL, Cooke TF, Sheard LB, Moreno JE, Katsir L, Zheng N, Browse J, Howe GA. JAZ8 lacks a canonical degron and has an EAR motif that mediates transcriptional repression of jasmonate responses in Arabidopsis. The Plant cell 2012, 24:536-550.
-
(2012)
The Plant cell
, vol.24
, pp. 536-550
-
-
Shyu, C.1
Figueroa, P.2
Depew, C.L.3
Cooke, T.F.4
Sheard, L.B.5
Moreno, J.E.6
Katsir, L.7
Zheng, N.8
Browse, J.9
Howe, G.A.10
-
37
-
-
40449131628
-
TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis
-
Szemenyei H, Hannon M, Long JA. TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science 2008, 319:1384-1386.
-
(2008)
Science
, vol.319
, pp. 1384-1386
-
-
Szemenyei, H.1
Hannon, M.2
Long, J.A.3
-
38
-
-
33645525430
-
Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations
-
Underwood BA, Vanderhaeghen R, Whitford R, Town CD, Hilson P. Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations. Plant biotechnology journal 2006, 4:317-324.
-
(2006)
Plant biotechnology journal
, vol.4
, pp. 317-324
-
-
Underwood, B.A.1
Vanderhaeghen, R.2
Whitford, R.3
Town, C.D.4
Hilson, P.5
-
39
-
-
34347206860
-
High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
-
Gietz RD, Schiestl RH. High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method. Nature protocols 2007, 2:31-34.
-
(2007)
Nature protocols
, vol.2
, pp. 31-34
-
-
Gietz, R.D.1
Schiestl, R.H.2
-
40
-
-
0032145257
-
Assessment of aryl hydrocarbon receptor complex interactions using pBEVY plasmids: expressionvectors with bi-directional promoters for use in Saccharomyces cerevisiae
-
Miller CA, Martinat MA, Hyman LE. Assessment of aryl hydrocarbon receptor complex interactions using pBEVY plasmids: expressionvectors with bi-directional promoters for use in Saccharomyces cerevisiae. Nucleic acids research 1998, 26:3577-3583.
-
(1998)
Nucleic acids research
, vol.26
, pp. 3577-3583
-
-
Miller, C.A.1
Martinat, M.A.2
Hyman, L.E.3
-
41
-
-
0028213166
-
Regulated degradation of HMG-CoA reductase, an integral membrane protein of the endoplasmic reticulum, in yeast
-
Hampton RY, Rine J. Regulated degradation of HMG-CoA reductase, an integral membrane protein of the endoplasmic reticulum, in yeast. The Journal of cell biology 1994, 125:299-312.
-
(1994)
The Journal of cell biology
, vol.125
, pp. 299-312
-
-
Hampton, R.Y.1
Rine, J.2
|