SCOPUS 정보 검색 플랫폼

ChemBioChem

Volumn 13, Issue 14, 2012, Pages 2100-2112

NMR Studies of HAR1 RNA Secondary Structures Reveal Conformational Dynamics in the Human RNA

(4) Ziegeler, Melanie a Cevec, Mirko a Richter, Christian a Schwalbe, Harald a

a GOETHE UNIVERSITY (Germany)

Author keywords

Divide and conquer; HAR1 RNA; NMR spectroscopy; RNA secondary folds; RNA structures

Indexed keywords

MAGNESIUM; RNA;

ARTICLE; BASE PAIRING; CHIMPANZEE; CIRCULAR DICHROISM; COMPARATIVE STUDY; GEL ELECTROPHORESIS; GENE; HAR1 GENE; HUMAN; HUMAN GENOME; MUTATION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; RNA CONFORMATION; RNA STRUCTURE;

ANIMALS; BASE SEQUENCE; CIRCULAR DICHROISM; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; NUCLEIC ACID CONFORMATION; PAN TROGLODYTES; RNA; RNA FOLDING; RNA, UNTRANSLATED;

PAN;

EID: 84866437197 PISSN: 14394227 EISSN: 14397633 Source Type: Journal
DOI: 10.1002/cbic.201200401 Document Type: Article

Times cited : (21)

References (50)

1
- 27644489022
- F. S. Collins, E. S. Lander, J. Rogers, R. H. Waterston, C. Q. Adams, R. Heilig, Nature 2004, 431, 931-945.
- (2004) Nature , vol.431 , pp. 931-945
- Collins, F.S.¹ Lander, E.S.² Rogers, J.³ Waterston, R.H.⁴ Adams, C.Q.⁵ Heilig, R.⁶

2
- 0035807360
- C. S. L. Lai, S. E. Fisher, J. A. Hurst, F. Vargha-Khadem, A. P. Monaco, Nature 2001, 413, 519-523.
- (2001) Nature , vol.413 , pp. 519-523
- Lai, C.S.L.¹ Fisher, S.E.² Hurst, J.A.³ Vargha-Khadem, F.⁴ Monaco, A.P.⁵

3
- 0347992009
- J. Zhang, Genetics 2003, 165, 2063-2070.
- (2003) Genetics , vol.165 , pp. 2063-2070
- Zhang, J.¹

4
- 2942744749
- P. D. Evans, J. R. Anderson, E. J. Vallender, S. S. Choi, B. T. Lahn, Hum. Mol. Genet. 2004, 13, 1139-1145.
- (2004) Hum. Mol. Genet. , vol.13 , pp. 1139-1145
- Evans, P.D.¹ Anderson, J.R.² Vallender, E.J.³ Choi, S.S.⁴ Lahn, B.T.⁵

5
- 4444311117
- R. J. Ferland, W. Eyaid, R. V. Collura, L. D. Tully, R. S. Hill, D. Al-Nouri, A. Al-Rumayyan, M. Topcu, G. Gascon, A. Bodell, Y. Y. Shugart, M. Ruvolo, C. A. Walsh, Nat. Genet. 2004, 36, 1008-1013.
- (2004) Nat. Genet. , vol.36 , pp. 1008-1013
- Ferland, R.J.¹ Eyaid, W.² Collura, R.V.³ Tully, L.D.⁴ Hill, R.S.⁵ Al-Nouri, D.⁶ Al-Rumayyan, A.⁷ Topcu, M.⁸ Gascon, G.⁹ Bodell, A.¹⁰ Shugart, Y.Y.¹¹ Ruvolo, M.¹² Walsh, C.A.¹³

6
- 33748675254
- K. S. Pollard, S. R. Salama, N. Lambert, M. A. Lambot, S. Coppens, J. S. Pedersen, S. Katzman, B. King, C. Onodera, A. Siepel, A. D. Kern, C. Dehay, H. Igel, M. Ares, Jr., P. Vanderhaeghen, D. Haussler, Nature 2006, 443, 167-172.
- (2006) Nature , vol.443 , pp. 167-172
- Pollard, K.S.¹ Salama, S.R.² Lambert, N.³ Lambot, M.A.⁴ Coppens, S.⁵ Pedersen, J.S.⁶ Katzman, S.⁷ King, B.⁸ Onodera, C.⁹ Siepel, A.¹⁰ Kern, A.D.¹¹ Dehay, C.¹² Igel, H.¹³ Ares Jr., M.¹⁴ Vanderhaeghen, P.¹⁵ Haussler, D.¹⁶

7
- 33750428182
- e.
- K. S. Pollard, S. R. Salama, B. King, A. D. Kern, T. Dreszer, S. Katzman, A. Siepel, J. S. Pedersen, G. Bejerano, R. Baertsch, K. R. Rosenbloom, J. Kent, D. Haussler, PLoS Genet. 2006, 2, e168.
- (2006) PLoS Genet. , vol.2 , pp. 168
- Pollard, K.S.¹ Salama, S.R.² King, B.³ Kern, A.D.⁴ Dreszer, T.⁵ Katzman, S.⁶ Siepel, A.⁷ Pedersen, J.S.⁸ Bejerano, G.⁹ Baertsch, R.¹⁰ Rosenbloom, K.R.¹¹ Kent, J.¹² Haussler, D.¹³

8
- 33646272409
- e.
- J. S. Pedersen, G. Bejerano, A. Siepel, K. Rosenbloom, K. Lindblad-Toh, E. S. Lander, J. Kent, W. Miller, D. Haussler, PLoS Comput. Biol. 2006, 2, e33.
- (2006) PLoS Comput. Biol. , vol.2 , pp. 33
- Pedersen, J.S.¹ Bejerano, G.² Siepel, A.³ Rosenbloom, K.⁴ Lindblad-Toh, K.⁵ Lander, E.S.⁶ Kent, J.⁷ Miller, W.⁸ Haussler, D.⁹

9
- 41349116135
- P. P. Amaral, M. E. Dinger, T. R. Mercer, J. S. Mattick, Science 2008, 319, 1787-1789;
- (2008) Science , vol.319 , pp. 1787-1789
- Amaral, P.P.¹ Dinger, M.E.² Mercer, T.R.³ Mattick, J.S.⁴

10
- 60349120914
- T. R. Mercer, M. E. Dinger, J. S. Mattick, Nat. Rev. Genet. 2009, 10, 155-159;
- (2009) Nat. Rev. Genet. , vol.10 , pp. 155-159
- Mercer, T.R.¹ Dinger, M.E.² Mattick, J.S.³

11
- 60149099385
- C. P. Ponting, P. L. Oliver, W. Reik, Cell 2009, 136, 629-641;
- (2009) Cell , vol.136 , pp. 629-641
- Ponting, C.P.¹ Oliver, P.L.² Reik, W.³

12
- 78149403591
- L. Lipovich, R. Johnson, C. Y. Lin, Biochim. Biophys. Acta Gene Regul. Mech. 2010, 1799, 597-615.
- (2010) Biochim. Biophys. Acta Gene Regul. Mech. , vol.1799 , pp. 597-615
- Lipovich, L.¹ Johnson, R.² Lin, C.Y.³

13
- 51149097366
- S. Prabhakar, A. Visel, J. A. Akiyama, M. Shoukry, K. D. Lewis, A. Holt, I. Plajzer-Frick, H. Morrison, D. R. Fitzpatrick, V. Afzal, L. A. Pennacchio, E. M. Rubin, J. P. Noonan, Science 2008, 321, 1346-1350.
- (2008) Science , vol.321 , pp. 1346-1350
- Prabhakar, S.¹ Visel, A.² Akiyama, J.A.³ Shoukry, M.⁴ Lewis, K.D.⁵ Holt, A.⁶ Plajzer-Frick, I.⁷ Morrison, H.⁸ Fitzpatrick, D.R.⁹ Afzal, V.¹⁰ Pennacchio, L.A.¹¹ Rubin, E.M.¹² Noonan, J.P.¹³

14
- 34248641119
- N. Galtier, L. Duret, Trends Genet. 2007, 23, 273-277.
- (2007) Trends Genet. , vol.23 , pp. 273-277
- Galtier, N.¹ Duret, L.²

15
- 0030996253
- U. DeSilva, G. D'Arcangelo, V. V. Braden, J. Chen, G. G. Miao, T. Curran, E. D. Green, Genome Res. 1997, 7, 157-164;
- (1997) Genome Res. , vol.7 , pp. 157-164
- DeSilva, U.¹ D'Arcangelo, G.² Braden, V.V.³ Chen, J.⁴ Miao, G.G.⁵ Curran, T.⁶ Green, E.D.⁷

16
- 0034932938
- D. S. Rice, T. Curran, Annu. Rev. Neurosci. 2001, 24, 1005-1039.
- (2001) Annu. Rev. Neurosci. , vol.24 , pp. 1005-1039
- Rice, D.S.¹ Curran, T.²

17
- 0342906570
- S. E. Hong, Y. Y. Shugart, D. T. Huang, S. A. Shahwan, P. E. Grant, J. O. Hourihane, N. D. Martin, C. A. Walsh, Nat. Genet. 2000, 26, 93-96;
- (2000) Nat. Genet. , vol.26 , pp. 93-96
- Hong, S.E.¹ Shugart, Y.Y.² Huang, D.T.³ Shahwan, S.A.⁴ Grant, P.E.⁵ Hourihane, J.O.⁶ Martin, N.D.⁷ Walsh, C.A.⁸

18
- 33749347872
- R. Panteri, A. Paiardini, F. Keller, Brain Res. 2006, 1116, 222-230;
- (2006) Brain Res. , vol.1116 , pp. 222-230
- Panteri, R.¹ Paiardini, A.² Keller, F.³

19
- 39149100360
- A. Tolosa, J. Sanjuan, C. Leal, J. Costas, M. D. Molto, R. de Frutos, Schizophr. Res. 2008, 99, 370-372.
- (2008) Schizophr. Res. , vol.99 , pp. 370-372
- Tolosa, A.¹ Sanjuan, J.² Leal, C.³ Costas, J.⁴ Molto, M.D.⁵ de Frutos, R.⁶

20
- 33846220338
- A. Cabrera-Socorro, N. C. Hernandez-Acosta, M. Gonzalez-Gomez, G. Meyer, Brain Res. 2007, 1132, 59-70;
- (2007) Brain Res. , vol.1132 , pp. 59-70
- Cabrera-Socorro, A.¹ Hernandez-Acosta, N.C.² Gonzalez-Gomez, M.³ Meyer, G.⁴

21
- 77956487199
- G. Meyer, J. Anat. 2010, 217, 334-343.
- (2010) J. Anat. , vol.217 , pp. 334-343
- Meyer, G.¹

22
- 77952940922
- R. Johnson, N. Richter, R. Jauch, P. M. Gaughwin, C. Zuccato, E. Cattaneo, L. W. Stanton, Physiol. Genomics 2010, 41, 269-274.
- (2010) Physiol. Genomics , vol.41 , pp. 269-274
- Johnson, R.¹ Richter, N.² Jauch, R.³ Gaughwin, P.M.⁴ Zuccato, C.⁵ Cattaneo, E.⁶ Stanton, L.W.⁷

23
- 77952583729
- A. Iacoangeli, R. Bianchi, H. Tiedge, Brain Res. 2010, 1338, 36-47.
- (2010) Brain Res. , vol.1338 , pp. 36-47
- Iacoangeli, A.¹ Bianchi, R.² Tiedge, H.³

24
- 45749112954
- A. Beniaminov, E. Westhof, A. Krol, RNA 2008, 14, 1270-1275.
- (2008) RNA , vol.14 , pp. 1270-1275
- Beniaminov, A.¹ Westhof, E.² Krol, A.³

25
- 79551535532
- e.
- W. A. Lorenz, P. Clote, PLoS One 2011, 6, e16178.
- (2011) PLoS One , vol.6 , pp. 16178
- Lorenz, W.A.¹ Clote, P.²

26
- 0027285185
- P. W. Davis, W. Thurmes, I. Tinoco, Jr., Nucleic Acids Res. 1993, 21, 537-545.
- (1993) Nucleic Acids Res. , vol.21 , pp. 537-545
- Davis, P.W.¹ Thurmes, W.² Tinoco Jr., I.³

27
- 10744232623
- B. Fürtig, C. Richter, W. Bermel, H. Schwalbe, J. Biomol. NMR 2004, 28, 69-79.
- (2004) J. Biomol. NMR , vol.28 , pp. 69-79
- Fürtig, B.¹ Richter, C.² Bermel, W.³ Schwalbe, H.⁴

28
- 79957533896
- S. Nozinovic, P. Gupta, B. Fürtig, C. Richter, S. Tullmann, E. Duchardt-Ferner, M. C. Holthausen, H. Schwalbe, Angew. Chem. 2011, 123, 5509-5512; Angew. Chem. Int. Ed. 2011, 50, 5397-5400.
- (2011) Angew. Chem. 2011, 123, 5509-5512; Angew. Chem. Int. Ed. , vol.50 , pp. 5397-5400
- Nozinovic, S.¹ Gupta, P.² Fürtig, B.³ Richter, C.⁴ Tullmann, S.⁵ Duchardt-Ferner, E.⁶ Holthausen, M.C.⁷ Schwalbe, H.⁸

29
- 77449092763
- S. Nozinovic, B. Fürtig, H. R. Jonker, C. Richter, H. Schwalbe, Nucleic Acids Res. 2010, 38, 683-694.
- (2010) Nucleic Acids Res. , vol.38 , pp. 683-694
- Nozinovic, S.¹ Fürtig, B.² Jonker, H.R.³ Richter, C.⁴ Schwalbe, H.⁵

30
- 0034176994
- M. Hennig, J. R. Williamson, Nucleic Acids Res. 2000, 28, 1585-1593.
- (2000) Nucleic Acids Res. , vol.28 , pp. 1585-1593
- Hennig, M.¹ Williamson, J.R.²

31
- 33846916194
- H. R. Jonker, S. Ilin, S. K. Grimm, J. Wöhnert, H. Schwalbe, Nucleic Acids Res. 2007, 35, 441-454.
- (2007) Nucleic Acids Res. , vol.35 , pp. 441-454
- Jonker, H.R.¹ Ilin, S.² Grimm, S.K.³ Wöhnert, J.⁴ Schwalbe, H.⁵

32
- 0000906068
- V. Sklenář, A. Bax, J. Magn. Reson. 1987, 75, 378-383.
- (1987) J. Magn. Reson. , vol.75 , pp. 378-383
- Sklenář, V.¹ Bax, A.²

33
- 0000830827
- M. Kadkhodaie, O. Rivas, M. Tan, A. Mohebbi, A. J. Shaka, J. Magn. Reson. 1991, 91, 437-443.
- (1991) J. Magn. Reson. , vol.91 , pp. 437-443
- Kadkhodaie, M.¹ Rivas, O.² Tan, M.³ Mohebbi, A.⁴ Shaka, A.J.⁵

34
- 0032569220
- A. J. Dingley, S. Grzesiek, J. Am. Chem. Soc. 1998, 120, 8293-8297.
- (1998) J. Am. Chem. Soc. , vol.120 , pp. 8293-8297
- Dingley, A.J.¹ Grzesiek, S.²

35
- 0028860964
- L. Mueller, P. Legault, A. Pardi, J. Am. Chem. Soc. 1995, 117, 11043-11048.
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 11043-11048
- Mueller, L.¹ Legault, P.² Pardi, A.³

36
- 0034913608
- B. Simon, K. Zanier, M. Sattler, J. Biomol. NMR 2001, 20, 173-176.
- (2001) J. Biomol. NMR , vol.20 , pp. 173-176
- Simon, B.¹ Zanier, K.² Sattler, M.³

37
- 3242816470
- J. Wöhnert, M. Görlach, H. Schwalbe, J. Biomol. NMR 2003, 26, 79-83.
- (2003) J. Biomol. NMR , vol.26 , pp. 79-83
- Wöhnert, J.¹ Görlach, M.² Schwalbe, H.³

38
- 0027688840
- V. Sklenář, R. D. Peterson, M. R. Rejante, J. Feigon, J. Biomol. NMR 1993, 3, 721-727.
- (1993) J. Biomol. NMR , vol.3 , pp. 721-727
- Sklenář, V.¹ Peterson, R.D.² Rejante, M.R.³ Feigon, J.⁴

39
- 0005963761
- U. Piantini, O. W. Sørensen, R. R. Ernst, J. Am. Chem. Soc. 1982, 104, 6800-6801.
- (1982) J. Am. Chem. Soc. , vol.104 , pp. 6800-6801
- Piantini, U.¹ Sørensen, O.W.² Ernst, R.R.³

40
- 2442561255
- J. P. Linge, M. Habeck, W. Rieping, M. Nilges, J. Magn. Reson. 2004, 167, 334-342.
- (2004) J. Magn. Reson. , vol.167 , pp. 334-342
- Linge, J.P.¹ Habeck, M.² Rieping, W.³ Nilges, M.⁴

41
- 0028008137
- J. P. Marino, H. Schwalbe, C. Anklin, W. Bermel, D. M. Crothers, C. Griesinger, J. Am. Chem. Soc. 1994, 116, 6472-6473.
- (1994) J. Am. Chem. Soc. , vol.116 , pp. 6472-6473
- Marino, J.P.¹ Schwalbe, H.² Anklin, C.³ Bermel, W.⁴ Crothers, D.M.⁵ Griesinger, C.⁶

42
- 0001266246
- H. Schwalbe, J. P. Marino, S. J. Glaser, C. Griesinger, J. Am. Chem. Soc. 1995, 117, 7251-7252.
- (1995) J. Am. Chem. Soc. , vol.117 , pp. 7251-7252
- Schwalbe, H.¹ Marino, J.P.² Glaser, S.J.³ Griesinger, C.⁴

43
- 0029881007
- R. Koradi, M. Billeter, K. Wuthrich, J. Mol. Graph. 1996, 14, 51-55.
- (1996) J. Mol. Graph. , vol.14 , pp. 51-55
- Koradi, R.¹ Billeter, M.² Wuthrich, K.³

44
- 4444268525
- D. L. Bryce, J. Boisbouvier, A. Bax, J. Am. Chem. Soc. 2004, 126, 10820-10821.
- (2004) J. Am. Chem. Soc. , vol.126 , pp. 10820-10821
- Bryce, D.L.¹ Boisbouvier, J.² Bax, A.³

45
- 0034685436
- M. Zweckstetter, A. Bax, J. Am. Chem. Soc. 2000, 122, 3791-3792.
- (2000) J. Am. Chem. Soc. , vol.122 , pp. 3791-3792
- Zweckstetter, M.¹ Bax, A.²

46
- 3543012707
- A. T. Brünger, P. D. Adams, G. M. Clore, W. L. DeLano, P. Gros, R. W. Grosse-Kunstleve, J. S. Jiang, J. Kuszewski, M. Nilges, N. S. Pannu, R. J. Read, L. M. Rice, T. Simonson, G. L. Warren, Acta Crystallogr. Sect. D 1998, 54, 905-921.
- (1998) Acta Crystallogr. Sect. D , vol.54 , pp. 905-921
- Brünger, A.T.¹ Adams, P.D.² Clore, G.M.³ DeLano, W.L.⁴ Gros, P.⁵ Grosse-Kunstleve, R.W.⁶ Jiang, J.S.⁷ Kuszewski, J.⁸ Nilges, M.⁹ Pannu, N.S.¹⁰ Read, R.J.¹¹ Rice, L.M.¹² Simonson, T.¹³ Warren, G.L.¹⁴

47
- 0034919240
- J. P. Linge, S. I. O'Donoghue, M. Nilges, Methods Enzymol. 2001, 339, 71-90.
- (2001) Methods Enzymol. , vol.339 , pp. 71-90
- Linge, J.P.¹ O'Donoghue, S.I.² Nilges, M.³

48
- 0025728614
- J. Pranata, S. G. Wierschke, W. L. Jorgensen, J. Am. Chem. Soc. 1991, 113, 2810-2819.
- (1991) J. Am. Chem. Soc. , vol.113 , pp. 2810-2819
- Pranata, J.¹ Wierschke, S.G.² Jorgensen, W.L.³

49
- 0242396923
- X. J. Lu, W. K. Olson, Nucleic Acids Res. 2003, 31, 5108-5121.
- (2003) Nucleic Acids Res. , vol.31 , pp. 5108-5121
- Lu, X.J.¹ Olson, W.K.²

50
- 4444221565
- E. F. Pettersen, T. D. Goddard, C. C. Huang, G. S. Couch, D. M. Greenblatt, E. C. Meng, T. E. Ferrin, J. Comput. Chem. 2004, 25, 1605-1612.
- (2004) J. Comput. Chem. , vol.25 , pp. 1605-1612
- Pettersen, E.F.¹ Goddard, T.D.² Huang, C.C.³ Couch, G.S.⁴ Greenblatt, D.M.⁵ Meng, E.C.⁶ Ferrin, T.E.⁷

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.