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Volumn 287, Issue 38, 2012, Pages 32085-32095

Structural and biochemical characterization of phage λ FI protein (gpFI) reveals a novel mechanism of DNA packaging chaperone activity

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; BINDING ACTIVITIES; BIOCHEMICAL CHARACTERIZATION; C-TERMINAL DOMAINS; CHAPERONE ACTIVITY; DNA-PACKAGING; HEAD STRUCTURE; N-TERMINAL DOMAINS; SEQUENCE ANALYSIS; SEQUENCE IDENTITY; STRUCTURAL COMPARISON; TERTIARY STRUCTURES; THREE-DIMENSIONAL STRUCTURE;

EID: 84866419716     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M112.378349     Document Type: Article
Times cited : (7)

References (44)
  • 1
    • 0016743233 scopus 로고
    • DNA as substrate for packaging into bacteriophage λ, in vitro
    • Hohn, B. (1975) DNA as substrate for packaging into bacteriophage λ, in vitro. J. Mol. Biol. 98, 93-106
    • (1975) J. Mol. Biol. , vol.98 , pp. 93-106
    • Hohn, B.1
  • 2
    • 0017737569 scopus 로고
    • Early events in the in vitro packaging of bacteriophage λ DNA
    • Becker, A., Marko, M., and Gold, M. (1977) Early events in the in vitro packaging of bacteriophage λ DNA. Virology 78, 291-305 (Pubitemid 8110981)
    • (1977) Virology , vol.78 , Issue.1 , pp. 291-305
    • Becker, A.1    Marko, M.2    Gold, M.3
  • 3
    • 0023474746 scopus 로고
    • A novel in vitro DNA packaging system demonstrating a direct role for the bacteriophage λ FI gene product
    • Davidson, A., and Gold, M. (1987) A novel in vitro DNA packaging system demonstrating a direct role for the bacteriophage λ FI gene product. Virology 161, 305-314
    • (1987) Virology , vol.161 , pp. 305-314
    • Davidson, A.1    Gold, M.2
  • 4
    • 0023898550 scopus 로고
    • Bacteriophage λ DNA packaging. The product of the FI gene promotes the incorporation of the prohead to the DNA-terminase complex
    • Becker, A., Murialdo, H., Lucko, H., and Morell, J. (1988) Bacteriophage λ DNA packaging. The product of the FI gene promotes the incorporation of the prohead to the DNA-terminase complex. J. Mol. Biol. 199, 597-607
    • (1988) J. Mol. Biol. , vol.199 , pp. 597-607
    • Becker, A.1    Murialdo, H.2    Lucko, H.3    Morell, J.4
  • 5
    • 1942436909 scopus 로고    scopus 로고
    • Initial cos cleavage of bacteriophage λ concatemers requires proheads and gpFI in in vivo
    • DOI 10.1111/j.1365-2958.2004.03990.x
    • Sippy, J., and Feiss, M. (2004) Initial cos cleavage of bacteriophage λ concatemers requires proheads and gpFI in vivo. Mol. Microbiol. 52, 501-513 (Pubitemid 38520718)
    • (2004) Molecular Microbiology , vol.52 , Issue.2 , pp. 501-513
    • Sippy, J.1    Feiss, M.2
  • 6
    • 0016770390 scopus 로고
    • Petit λ, a family of particles from coliphage λ infected cells
    • Hohn, T., Flick, H., and Hohn, B. (1975) Petit λ, a family of particles from coliphage λ infected cells. J. Mol. Biol. 98, 107-120
    • (1975) J. Mol. Biol. , vol.98 , pp. 107-120
    • Hohn, T.1    Flick, H.2    Hohn, B.3
  • 7
    • 0015350307 scopus 로고
    • The morphogenesis of bacteriophage λ. IV. Identification of gene products and control of the expression of the morphogenetic information
    • Murialdo, H., and Siminovitch, L. (1972) The morphogenesis of bacteriophage λ. IV. Identification of gene products and control of the expression of the morphogenetic information. Virology 48, 785-823
    • (1972) Virology , vol.48 , pp. 785-823
    • Murialdo, H.1    Siminovitch, L.2
  • 8
    • 0029082986 scopus 로고
    • A defined system for in vitro λ DNA packaging
    • Hwang, Y., and Feiss, M. (1995) A defined system for in vitro λ DNA packaging. Virology 211, 367-376
    • (1995) Virology , vol.211 , pp. 367-376
    • Hwang, Y.1    Feiss, M.2
  • 9
    • 0019476202 scopus 로고
    • Bacteriophage lambda DNA maturation. The functional relationships among the products of genes Nu1 A and F1
    • DOI 10.1016/0022-2836(81)90211-4
    • Murialdo, H., Fife, W. L., Becher, A., Feiss, M., and Yochem, J. (1981) Bacteriophage λ DNA maturation. The functional relationships among the products of genes Nul, A and FI. J. Mol. Biol. 145, 375-404 (Pubitemid 11144555)
    • (1981) Journal of Molecular Biology , vol.145 , Issue.2 , pp. 375-404
    • Murialdo, H.1    Fife, W.L.2    Becker, A.3
  • 10
    • 0022512622 scopus 로고
    • Structure and inherent properties of the bacteriophage λ head shell. V. Amber mutants in gene E
    • Katsura, I. (1986) Structure and inherent properties of the bacteriophage λ head shell. V. Amber mutants in gene E. J. Mol. Biol. 190, 577-586
    • (1986) J. Mol. Biol. , vol.190 , pp. 577-586
    • Katsura, I.1
  • 11
    • 0030920555 scopus 로고    scopus 로고
    • Mutations of the coat protein gene of bacteriophage λ that overcome the necessity for the FI gene; the EFi domain
    • Murialdo, H., and Tzamtzis, D. (1997) Mutations of the coat protein gene of bacteriophage λ that overcome the necessity for the Fl gene; the EFi domain. Mol. Microbiol. 24, 341-353 (Pubitemid 27223865)
    • (1997) Molecular Microbiology , vol.24 , Issue.2 , pp. 341-353
    • Murialdo, H.1    Tzamtzis, D.2
  • 12
    • 0030805107 scopus 로고    scopus 로고
    • Mutations in the terminase genes of bacteriophage λ that bypass the necessity for FI
    • Murialdo, H., Tzamtzis, D., Berrú, M., Fife, W. L., and Becker, A. (1997) Mutations in the terminase genes of bacteriophage λ that bypass the necessity for FI. Mol. Microbiol. 24, 937-952 (Pubitemid 27286147)
    • (1997) Molecular Microbiology , vol.24 , Issue.5 , pp. 937-952
    • Murialdo, H.1    Tzamtzis, D.2    Berru, M.3    Fife, W.L.4    Becker, A.5
  • 13
    • 0024110555 scopus 로고
    • Partial FI gene-independence of λ-21 hybrid phages specifying chimeric terminases
    • Feiss, M., Frackman, S., and Momany, T. (1988) Partial FI gene-independence of λ-21 hybrid phages specifying chimeric terminases. Virology 167, 323-325
    • (1988) Virology , vol.167 , pp. 323-325
    • Feiss, M.1    Frackman, S.2    Momany, T.3
  • 14
    • 80053363045 scopus 로고    scopus 로고
    • The protein interaction map of bacteriophage λ
    • Rajagopala, S. V., Casjens, S., and Uetz, P. (2011) The protein interaction map of bacteriophage λ. BMC Microbiol. 11, 213
    • (2011) BMC Microbiol. , vol.11 , pp. 213
    • Rajagopala, S.V.1    Casjens, S.2    Uetz, P.3
  • 15
    • 0025362781 scopus 로고
    • Bacteriophage λ DNA: The beginning of the end
    • Becker, A., and Murialdo, H. (1990) Bacteriophage λ DNA: the beginning of the end. J. Bacteriol. 172, 2819-2824
    • (1990) J. Bacteriol. , vol.172 , pp. 2819-2824
    • Becker, A.1    Murialdo, H.2
  • 16
    • 0025899211 scopus 로고
    • Bacteriophage λ DNA maturation and packaging
    • Murialdo, H. (1991) Bacteriophage λ DNA maturation and packaging. Annu. Rev. Biochem. 60, 125-153
    • (1991) Annu. Rev. Biochem. , vol.60 , pp. 125-153
    • Murialdo, H.1
  • 17
    • 0029117830 scopus 로고
    • Role of gpFI protein in DNA packaging by bacteriophage λ
    • Catalano, C. E., and Tomka, M. A. (1995) Role of gpFI protein in DNA packaging by bacteriophage λ. Biochemistry 34, 10036-10042
    • (1995) Biochemistry , vol.34 , pp. 10036-10042
    • Catalano, C.E.1    Tomka, M.A.2
  • 19
    • 0004040543 scopus 로고    scopus 로고
    • University of California, San Francisco
    • Goddard, T. D., and Kneller, D. G. (2008) SPARKY 3, University of California, San Francisco
    • (2008) SPARKY 3
    • Goddard, T.D.1    Kneller, D.G.2
  • 20
    • 0036189601 scopus 로고    scopus 로고
    • Multidimensional NMR methods for protein structure determination
    • Kanelis, V., Forman-Kay, J. D., and Kay, L. E. (2001) Multidimensional NMR methods for protein structure determination. IUBMB Life 52, 291-302 (Pubitemid 33731075)
    • (2001) IUBMB Life , vol.52 , Issue.6 , pp. 291-302
    • Kanelis, V.1    Forman-Kay, J.D.2    Kay, L.E.3
  • 21
    • 0029437296 scopus 로고
    • Pulsed field gradient multi-dimensional NMR methods for the study of protein structure and dynamics in solution
    • Kay, L. E. (1995) Pulsed field gradient multi-dimensional NMR methods for the study of protein structure and dynamics in solution. Prog. Biophys. Mol. Biol. 63, 277-299
    • (1995) Prog. Biophys. Mol. Biol. , vol.63 , pp. 277-299
    • Kay, L.E.1
  • 22
    • 4644340524 scopus 로고    scopus 로고
    • Automated NMR structure calculation with CYANA
    • Güntert, P. (2004) Automated NMR structure calculation with CYANA. Methods Mol. Biol. 278, 353-378
    • (2004) Methods Mol. Biol. , vol.278 , pp. 353-378
    • Güntert, P.1
  • 23
    • 0033003335 scopus 로고    scopus 로고
    • Protein backbone angle restraints from searching a database for chemical shift and sequence homology
    • DOI 10.1023/A:1008392405740
    • Cornilescu, G., Delaglio, F., and Bax, A. (1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13, 289-302 (Pubitemid 29143535)
    • (1999) Journal of Biomolecular NMR , vol.13 , Issue.3 , pp. 289-302
    • Cornilescu, G.1    Delaglio, F.2    Bax, A.3
  • 25
    • 0018133425 scopus 로고
    • Head morphogenesis of complex double-stranded deoxyribonucleic acid bacteriophages
    • Murialdo, H., and Becker, A. (1978) Head morphogenesis of complex double-stranded deoxyribonucleic acid bacteriophages. Microbiol. Rev. 42, 529-576 (Pubitemid 9044053)
    • (1978) Microbiological Reviews , vol.42 , Issue.3 , pp. 529-576
    • Murialdo, H.1    Becker, A.2
  • 26
    • 0016608755 scopus 로고
    • The role of gene Nu3 in bacteriophage λ head morphogenesis
    • Ray, P., and Murialdo, H. (1975) The role of gene Nu3 in bacteriophage λ head morphogenesis. Virology 64, 247-263
    • (1975) Virology , vol.64 , pp. 247-263
    • Ray, P.1    Murialdo, H.2
  • 27
    • 0028871926 scopus 로고
    • Dali: A network tool for protein structure comparison
    • Holm, L., and Sander, C. (1995) Dali: a network tool for protein structure comparison. Trends Biochem. Sci. 20, 478-480
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 478-480
    • Holm, L.1    Sander, C.2
  • 28
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin, A. G., Brenner, S. E., Hubbard, T., and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 30
    • 0029842597 scopus 로고    scopus 로고
    • The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous
    • Krogh, S., O'Reilly, M., Nolan, N., and Devine, K. M. (1996) The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous. Microbiology 142, 2031-2040 (Pubitemid 26288075)
    • (1996) Microbiology , vol.142 , Issue.8 , pp. 2031-2040
    • Krogh, S.1    O'Reilly, M.2    Nolan, N.3    Devine, K.M.4
  • 31
    • 0014432929 scopus 로고
    • Conversion of Bacillus subtilis DNA to phage DNA following mitomycin C induction
    • Okamoto, K., Mudd, J. A., and Marmur, J. (1968) Conversion of Bacillus subtilis DNA to phage DNA following mitomycin C induction. J. Mol. Biol. 34, 429-437
    • (1968) J. Mol. Biol. , vol.34 , pp. 429-437
    • Okamoto, K.1    Mudd, J.A.2    Marmur, J.3
  • 35
    • 0036299014 scopus 로고    scopus 로고
    • Bacteriophage Mu genome sequence: Analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus
    • DOI 10.1006/jmbi.2002.5437
    • Morgan, G. J., Hatfull, G. F., Casjens, S., and Hendrix, R. W. (2002) Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J. Mol. Biol. 317, 337-359 (Pubitemid 34722175)
    • (2002) Journal of Molecular Biology , vol.317 , Issue.3 , pp. 337-359
    • Morgan, G.J.1    Hatfull, G.F.2    Casjens, S.3    Hendrix, R.W.4
  • 36
    • 80053896978 scopus 로고    scopus 로고
    • Genetic analysis of phage Mu Mor protein amino acids involved in DNA minor groove binding and conformational changes
    • Kumaraswami, M., Avanigadda, L., Rai, R., Park, H. W., and Howe, M. M. (2011) Genetic analysis of phage Mu Mor protein amino acids involved in DNA minor groove binding and conformational changes. J. Biol. Chem. 286, 35852-35862
    • (2011) J. Biol. Chem. , vol.286 , pp. 35852-35862
    • Kumaraswami, M.1    Avanigadda, L.2    Rai, R.3    Park, H.W.4    Howe, M.M.5
  • 37
    • 0141926716 scopus 로고    scopus 로고
    • Genome and proteome of Listeria monocytogenes phage PSA: An unusual case for programmed + 1 translational frameshifting in structural protein synthesis
    • DOI 10.1046/j.1365-2958.2003.03684.x
    • Zimmer, M., Sattelberger, E., Inman, R. B., Calendar, R., and Loessner, M. J. (2003) Genome and proteome of Listeria monocytogenes phage PSA: an unusual case for programmed +1 translational frameshifting in structural protein synthesis. Mol. Microbiol. 50, 303-317 (Pubitemid 37229096)
    • (2003) Molecular Microbiology , vol.50 , Issue.1 , pp. 303-317
    • Zimmer, M.1    Sattelberger, E.2    Inman, R.B.3    Calendar, R.4    Loessner, M.J.5
  • 38
    • 72249094991 scopus 로고    scopus 로고
    • Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site
    • Dorscht, J., Klumpp, J., Bielmann, R., Schmelcher, M., Born, Y., Zimmer, M., Calendar, R., and Loessner, M. J. (2009) Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site. J. Bacteriol. 191, 7206-7215
    • (2009) J. Bacteriol. , vol.191 , pp. 7206-7215
    • Dorscht, J.1    Klumpp, J.2    Bielmann, R.3    Schmelcher, M.4    Born, Y.5    Zimmer, M.6    Calendar, R.7    Loessner, M.J.8
  • 39
    • 77957857001 scopus 로고    scopus 로고
    • Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sites
    • Kilcher, S., Loessner, M. J., and Klumpp, J. (2010) Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sites. J. Bacteriol. 192, 5441-5453
    • (2010) J. Bacteriol. , vol.192 , pp. 5441-5453
    • Kilcher, S.1    Loessner, M.J.2    Klumpp, J.3
  • 40
    • 0022607145 scopus 로고
    • The FI gene product of bacterial virus Lambda is related to the E. coli chromosomal protein NS2 and is involved in intracellular DNA organization
    • Witkiewicz, H., Schneider, R., and Schweiger, M. (1986) The FI gene product of bacterial virus λ is related to the E. coli chromosomal protein NS2 and is involved in intracellular DNA organization. Biosci. Rep. 6, 103-112 (Pubitemid 16102533)
    • (1986) Bioscience Reports , vol.6 , Issue.1 , pp. 103-112
    • Witkiewicz, H.1    Schneider, R.2    Schweiger, M.3
  • 41
    • 66149091527 scopus 로고    scopus 로고
    • Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa
    • Suzuki, R., Shindo, H., Tase, A., Kikuchi, Y., Shimizu, M., and Yamazaki, T. (2009) Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa. Proteins 75, 336-347
    • (2009) Proteins , vol.75 , pp. 336-347
    • Suzuki, R.1    Shindo, H.2    Tase, A.3    Kikuchi, Y.4    Shimizu, M.5    Yamazaki, T.6
  • 42
    • 34548671924 scopus 로고    scopus 로고
    • Immunoglobulin-like domains on bacteriophage: weapons of modest damage?
    • DOI 10.1016/j.mib.2007.05.018, PII S1369527407000872, Host-microbe interactions: fungi/parasites/viruses
    • Fraser, J. S., Maxwell, K. L., and Davidson, A. R. (2007) Immunoglobulin-like domains on bacteriophage: weapons of modest damage? Curr. Opin. Microbiol. 10, 382-387 (Pubitemid 47411626)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.4 , pp. 382-387
    • Fraser, J.S.1    Maxwell, K.L.2    Davidson, A.R.3
  • 43
    • 33646191863 scopus 로고    scopus 로고
    • Ig-like domains on bacteriophages: A tale of promiscuity and deceit
    • Fraser, J. S., Yu, Z., Maxwell, K. L., and Davidson, A. R. (2006) Ig-like domains on bacteriophages: a tale of promiscuity and deceit. J. Mol. Biol. 359, 496-507
    • (2006) J. Mol. Biol. , vol.359 , pp. 496-507
    • Fraser, J.S.1    Yu, Z.2    Maxwell, K.L.3    Davidson, A.R.4
  • 44
    • 50849118817 scopus 로고    scopus 로고
    • Bacteriophage λ stabilization by auxiliary protein gpD: Timing, location, and mechanism of attachment determined by cryo-EM
    • Lander, G. C., Evilevitch, A., Jeembaeva, M., Potter, C. S., Carragher, B., and Johnson, J. E. (2008) Bacteriophage λ stabilization by auxiliary protein gpD: timing, location, and mechanism of attachment determined by cryo-EM. Structure 16, 1399-1406
    • (2008) Structure , vol.16 , pp. 1399-1406
    • Lander, G.C.1    Evilevitch, A.2    Jeembaeva, M.3    Potter, C.S.4    Carragher, B.5    Johnson, J.E.6


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