메뉴 건너뛰기




Volumn 21, Issue 10, 2012, Pages 2788-2806

Molecular docking and 3D-QSAR studies of falcipain inhibitors using CoMFA, CoMSIA, and Open3DQSAR

Author keywords

CoMFA; CoMSIA; Docking; Falcipain inhibitors; MDC; Open3DQSAR

Indexed keywords

ANTIMALARIAL AGENT; FALCIPAIN INHIBITOR; UNCLASSIFIED DRUG;

EID: 84866381677     PISSN: 10542523     EISSN: 15548120     Source Type: Journal    
DOI: 10.1007/s00044-011-9803-1     Document Type: Article
Times cited : (30)

References (32)
  • 1
    • 84861335128 scopus 로고    scopus 로고
    • Accelrys Software Inc., San Diego.
    • Accelrys Software Inc. (2009) Discovery Studio 2.5. Accelrys Software Inc., San Diego. http://www.accelrys.com
    • (2009) Discovery Studio 2.5
  • 2
    • 85162654781 scopus 로고
    • Predictive ability of regression models. Part II: Selection of the best predictive PLS model
    • Baroni M, Clementi S, Cruciani G, Costantino G, Riganelli D (1992) Predictive ability of regression models. Part II: selection of the best predictive PLS model. J Chemom 6:347-356
    • (1992) J Chemom , vol.6 , pp. 347-356
    • Baroni, M.1    Clementi, S.2    Cruciani, G.3    Costantino, G.4    Riganelli, D.5
  • 3
  • 4
    • 28844436051 scopus 로고    scopus 로고
    • Two- and three-dimensional quantitative structure-activity relationships for a series of purine nucleoside phosphorylase inhibitors
    • Castilho MS, Postigo MP, de Paula CB, Montanari CA, Oliva G, Andricopulo AD (2006) Two- and three-dimensional quantitative structure-activity relationships for a series of purine nucleoside phosphorylase inhibitors. Bioorg Med Chem 14:516-527
    • (2006) Bioorg Med Chem , vol.14 , pp. 516-527
    • Castilho, M.S.1    Postigo, M.P.2    De Paula, C.B.3    Montanari, C.A.4    Oliva, G.5    Andricopulo, A.D.6
  • 5
    • 34447642171 scopus 로고    scopus 로고
    • 2D quantitative structure-activity relationship studies on a series of cholesteryl ester transfer protein inhibitors
    • Castilho MS, Guido RVC, Andricopulo AD (2007) 2D quantitative structure-activity relationship studies on a series of cholesteryl ester transfer protein inhibitors. Bioorg Med Chem 15:6242-6252
    • (2007) Bioorg Med Chem , vol.15 , pp. 6242-6252
    • Castilho, M.S.1    Guido, R.V.C.2    Andricopulo, A.D.3
  • 6
    • 62549150308 scopus 로고    scopus 로고
    • Thiocarbamates as non-nucleoside HIV-1 reverse transcriptase inhibitors: Docking-based CoMFA and CoMSIA analyses
    • Cichero E, Cesarini S, Fossa P, Spallarossa A, Mosti L (2009) Thiocarbamates as non-nucleoside HIV-1 reverse transcriptase inhibitors: docking-based CoMFA and CoMSIA analyses. Eur J Med Chem 44:2059-2070
    • (2009) Eur J Med Chem , vol.44 , pp. 2059-2070
    • Cichero, E.1    Cesarini, S.2    Fossa, P.3    Spallarossa, A.4    Mosti, L.5
  • 7
    • 20844450385 scopus 로고    scopus 로고
    • Statistical variation in progressive scrambling
    • Clark RD, Fox PC (2004) Statistical variation in progressive scrambling. J Comput Aided Mol Des 18:563-576
    • (2004) J Comput Aided Mol des , vol.18 , pp. 563-576
    • Clark, R.D.1    Fox, P.C.2
  • 8
    • 84988115618 scopus 로고
    • Validation of the general purpose Tripos 5.2 force field
    • Clark M, Cramer RD, Opdenbosch NV (1989) Validation of the general purpose Tripos 5.2 force field. J Comput Chem 10: 982-1012
    • (1989) J Comput Chem , vol.10 , pp. 982-1012
    • Clark, M.1    Cramer, R.D.2    Opdenbosch, N.V.3
  • 12
    • 0030879653 scopus 로고    scopus 로고
    • Hemoglobin metabolism in the malaria parasite Plasmodium falciparum
    • Francis SE, Sullivan DJ, Goldberg DE (1997) Hemoglobin metabolism in the malaria parasite Plasmodium falciparum. Annu Rev Microbiol 51:97-123
    • (1997) Annu Rev Microbiol , vol.51 , pp. 97-123
    • Francis, S.E.1    Sullivan, D.J.2    Goldberg, D.E.3
  • 14
    • 0042355453 scopus 로고    scopus 로고
    • Rational selection of training and test sets for the development of validated QSAR models
    • Golbraikh A, Shen M, Xiao Z, Xiao YD, Lee KH, Tropsha A (2003) Rational selection of training and test sets for the development of validated QSAR models. J Comput Aided Mol Des 17:241-253
    • (2003) J Comput Aided Mol des , vol.17 , pp. 241-253
    • Golbraikh, A.1    Shen, M.2    Xiao, Z.3    Xiao, Y.D.4    Lee, K.H.5    Tropsha, A.6
  • 15
    • 33846854442 scopus 로고    scopus 로고
    • 3D QSAR comparative molecular field analysis on nonsteroidal farnesoid X receptor activators
    • Honorio KM, Garratt RC, Polikarpov I, Andricopulo AD (2007) 3D QSAR comparative molecular field analysis on nonsteroidal farnesoid X receptor activators. J Mol Graph Model 25:921-927 http://www.amref.org/what-we-do/fight- disease/malaria (2011)
    • (2007) J Mol Graph Model , vol.25 , pp. 921-927
    • Honorio, K.M.1    Garratt, R.C.2    Polikarpov, I.3    Andricopulo, A.D.4
  • 16
    • 61449267734 scopus 로고    scopus 로고
    • Structures of falcipain-2 and falcipain-3 bound to small molecule inhibitors: Implications for substrate specificity
    • Kerr ID, Lee JH, Pandey KC, Harrison A, Sajid M, Rosenthal PJ, Brinen LS (2009) Structures of falcipain-2 and falcipain-3 bound to small molecule inhibitors: implications for substrate specificity. J Med Chem 52:852-857
    • (2009) J Med Chem , vol.52 , pp. 852-857
    • Kerr, I.D.1    Lee, J.H.2    Pandey, K.C.3    Harrison, A.4    Sajid, M.5    Rosenthal, P.J.6    Brinen, L.S.7
  • 18
    • 77958466860 scopus 로고    scopus 로고
    • 3D-QSAR and molecular docking studies on fused pyrazoles as p38a mitogen-activated protein kinase inhibitors
    • Lan P, Huang ZJ, Sun JR, Chen WM (2010) 3D-QSAR and molecular docking studies on fused pyrazoles as p38a mitogen-activated protein kinase inhibitors. Int J Mol Sci 11:3357-3374
    • (2010) Int J Mol Sci , vol.11 , pp. 3357-3374
    • Lan, P.1    Huang, Z.J.2    Sun, J.R.3    Chen, W.M.4
  • 19
    • 0030920575 scopus 로고    scopus 로고
    • Smart region definition: A new way to improve the predictive ability and interpretability of three-dimensional quantitative structure-activity relationships
    • Pastor M, Cruciani G, Clementi S (1997) Smart region definition: a new way to improve the predictive ability and interpretability of three-dimensional quantitative structure-activity relationships. J Med Chem 40:1455-1464
    • (1997) J Med Chem , vol.40 , pp. 1455-1464
    • Pastor, M.1    Cruciani, G.2    Clementi, S.3
  • 21
  • 23
    • 0026586422 scopus 로고
    • Isolation and characterization of a cysteine proteinase gene of Plasmodium falciparum
    • Rosenthal PJ, Nelson RG (1992) Isolation and characterization of a cysteine proteinase gene of Plasmodium falciparum. Mol Biochem Parasitol 51:143-152
    • (1992) Mol Biochem Parasitol , vol.51 , pp. 143-152
    • Rosenthal, P.J.1    Nelson, R.G.2
  • 24
    • 0029057887 scopus 로고
    • Functional expression of falcipain, a Plasmodium falciparum cysteine proteinase, supports its role as a malarial hemoglobinase
    • Salas F, Fichmann J, Lee GK, Scott MD, Rosenthal PJ (1995) Functional expression of falcipain, a Plasmodium falciparum cysteine proteinase, supports its role as a malarial hemoglobinase. Infect Immun 63:2120-2125
    • (1995) Infect Immun , vol.63 , pp. 2120-2125
    • Salas, F.1    Fichmann, J.2    Lee, G.K.3    Scott, M.D.4    Rosenthal, P.J.5
  • 25
    • 0036072627 scopus 로고    scopus 로고
    • Reducing requirements for hemoglobin hydrolysis by Plasmodium falciparum cysteine proteases
    • Shenai BR, Rosenthal PJ (2002) Reducing requirements for hemoglobin hydrolysis by Plasmodium falciparum cysteine proteases. Mol Biochem Parasitol 122:99-104
    • (2002) Mol Biochem Parasitol , vol.122 , pp. 99-104
    • Shenai, B.R.1    Rosenthal, P.J.2
  • 26
    • 0034666133 scopus 로고    scopus 로고
    • Characterization of native and recombinant falcipain-2, a principal trophozoite cysteine protease and essential hemoglobinase of Plasmodium falciparum
    • Shenai BR, Sijwali PS, Singh A, Rosenthal PJ (2000) Characterization of native and recombinant falcipain-2, a principal trophozoite cysteine protease and essential hemoglobinase of Plasmodium falciparum. J Biol Chem 275:29000-29010
    • (2000) J Biol Chem , vol.275 , pp. 29000-29010
    • Shenai, B.R.1    Sijwali, P.S.2    Singh, A.3    Rosenthal, P.J.4
  • 27
    • 0035644195 scopus 로고    scopus 로고
    • Expression and characterization of the Plasmodium falciparum haemoglobinase falcipain-3
    • Sijwali PS, Shenai BR, Gut J, Singh A, Rosenthal PJ (2001) Expression and characterization of the Plasmodium falciparum haemoglobinase falcipain-3. Biochem J 360:481-489
    • (2001) Biochem J , vol.360 , pp. 481-489
    • Sijwali, P.S.1    Shenai, B.R.2    Gut, J.3    Singh, A.4    Rosenthal, P.J.5
  • 28
    • 33748328016 scopus 로고    scopus 로고
    • Gene disruptions demonstrate independent roles for the four falcipain cysteine proteases of Plasmodium falciparum
    • Sijwali PS, Koo J, Singh N, Rosenthal PJ (2006) Gene disruptions demonstrate independent roles for the four falcipain cysteine proteases of Plasmodium falciparum. Mol Biochem Parasitol 150:96-106
    • (2006) Mol Biochem Parasitol , vol.150 , pp. 96-106
    • Sijwali, P.S.1    Koo, J.2    Singh, N.3    Rosenthal, P.J.4
  • 29
    • 78651426971 scopus 로고    scopus 로고
    • Open3DQSAR: A new open-source software aimed at high-throughput chemometric analysis of molecular interaction fields
    • Tosco P, Balle T (2011) Open3DQSAR: a new open-source software aimed at high-throughput chemometric analysis of molecular interaction fields. J Mol Model 17:201-208
    • (2011) J Mol Model , vol.17 , pp. 201-208
    • Tosco, P.1    Balle, T.2
  • 30
    • 84866381422 scopus 로고    scopus 로고
    • St. Louis.
    • Tripos Inc. (2006) SYBYL 7.3. Tripos Inc., St. Louis. http://www. tripos.com
    • (2006) SYBYL 7.3. Tripos Inc
  • 31
    • 2142659388 scopus 로고    scopus 로고
    • Antimalarial drug resistance
    • White NJ (2004) Antimalarial drug resistance. J Clin Invest 113: 1084-1092
    • (2004) J Clin Invest , vol.113 , pp. 1084-1092
    • White, N.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.