Identification and accurate quantitation of biological oligosaccharide mixtures

Analytical Chemistry

Volumn 84, Issue 18, 2012, Pages 7793-7801

  Strum, John S ^a   Kim, Jaehan ^b   Wu, Shuai ^a   De Leoz, Maria Lorna A ^a   Peacock, Kyle ^a   Grimm, Rudolf ^a,c   German, J Bruce ^a   Mills, David A ^a   Lebrilla, Carlito B ^a,d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Chungnam National University   (South Korea)

^c AGILENT TECHNOLOGIES   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIFIDOBACTERIUM; BIFIDOBACTERIUM LONGUM; CATABOLIC ACTIVITY; GLYCOSIDASES; HUMAN MILK OLIGOSACCHARIDES; INTERNAL STANDARDS; ISOTOPICALLY LABELED; STRUCTURAL IDENTIFICATION;

ENZYMES; METABOLISM; OLIGOSACCHARIDES; SACCHARIFICATION;

BACTERIA;

GLYCOSIDASE; OLIGOSACCHARIDE;

ARTICLE; BIFIDOBACTERIUM; BREAST MILK; CHEMISTRY; DEUTERIUM HYDROGEN EXCHANGE; ENZYMOLOGY; GASTROINTESTINAL TRACT; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HUMAN; MASS SPECTROMETRY; METABOLISM; MICROBIOLOGY;

BIFIDOBACTERIUM; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DEUTERIUM EXCHANGE MEASUREMENT; GASTROINTESTINAL TRACT; GLYCOSIDE HYDROLASES; HUMANS; MASS SPECTROMETRY; MILK, HUMAN; OLIGOSACCHARIDES;

EID: 84866345911     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac301128s     Document Type: Article

References (56)

1. Petherick, A. Nature 2010, 468, S5-7
2. Rockova, S.; Nevoral, J.; Rada, V.; Marsik, P.; Sklenar, J.; Hinkova, A.; Vlkova, E.; Marounek, M. Int. Dairy J. 2011, 21, 504-508
3. Gnoth, M. J.; Kunz, C.; Kinne-Saffran, E.; Rudloff, S. J. Nutr. 2000, 130, 3014-3020
4. Zivkovic, A. M.; German, J. B.; Lebrilla, C. B.; Mills, D. A. Proc. Natl. Acad. Sci. U.S.A. 2011, 108 (Suppl 1) 4653-4658
5. Shoaf, K.; Mulvey, G. L.; Armstrong, G. D.; Hutkins, R. W. Infect. Immun. 2006, 74, 6920-6928
6. Donovan, S. M. Br. J. Nutr. 2009, 101, 1267-1269
7. LoCascio, R. G.; Ninonuevo, M. R.; Freeman, S. L.; Sela, D. A.; Grimm, R.; Lebrilla, C. B.; Mills, D. A.; German, J. B. J. Agric. Food. Chem. 2007, 55, 8914-8919
8. Stepans, M. B.; Wilhelm, S. L.; Hertzog, M.; Rodehorst, T. K.; Blaney, S.; Clemens, B.; Polak, J. J.; Newburg, D. S. Breastfeed. Med. 2006, 1, 207-215
9. Asakuma, S.; Hatakeyama, E.; Urashima, T.; Yoshida, E.; Katayama, T.; Yamamoto, K.; Kumagai, H.; Ashida, H.; Hirose, J.; Kitaoka, M. J. Biol. Chem. 2011, 286, 34583-34592
10. Yuan, J.; Hashii, N.; Kawasaki, N.; Itoh, S.; Kawanishi, T.; Hayakawa, T. J. Chromatogr., A 2005, 1067, 145-152
11. Fong, B.; Ma, K.; McJarrow, P. J. Agric. Food Chem. 2011, 59, 9788-9795
12. Jang, K. S.; Kim, Y. G.; Gil, G. C.; Park, S. H.; Kim, B. G. Anal. Biochem. 2009, 386, 228-236
13. Gil, G. C.; Kim, Y. G.; Kim, B. G. Anal. Biochem. 2008, 379, 45-59
14. Ridlova, G.; Mortimer, J. C.; Maslen, S. L.; Dupree, P.; Stephens, E. Rapid Commun. Mass Spectrom. 2008, 22, 2723-2730
15. Ninonuevo, M. R.; Ward, R. E.; LoCascio, R. G.; German, J. B.; Freeman, S. L.; Barboza, M.; Mills, D. A.; Lebrilla, C. B. Anal. Biochem. 2007, 361, 15-23
16. Tang, H.; Mechref, Y.; Novotny, M. V. Bioinformatics 2005, 21 (Suppl 1) i431-9
17. Ethier, M.; Saba, J. A.; Ens, W.; Standing, K. G.; Perreault, H. Rapid Commun. Mass Spectrom. 2002, 16, 1743-1754
18. Stahl, B.; Thurl, S.; Zeng, J.; Karas, M.; Hillenkamp, F.; Steup, M.; Sawatzki, G. Anal. Biochem. 1994, 223, 218-226
19. Yamagaki, T.; Nakanishi, H. Anal. Sci. 2001, 17, 83-87
20. Pfenninger, A.; Karas, M.; Finke, B.; Stahl, B. J. Am. Soc. Mass Spectrom. 2002, 13, 1331-1340
21. Pfenninger, A.; Karas, M.; Finke, B.; Stahl, B. J. Am. Soc. Mass Spectrom. 2002, 13, 1341-1348
22. Ninonuevo, M.; An, H.; Yin, H.; Killeen, K.; Grimm, R.; Ward, R.; German, B.; Lebrilla, C. Electrophoresis 2005, 26, 3641-3649
23. Laurent, N.; Voglmeir, J.; Flitsch, S. L. Chem. Commun. (Camb) 2008, 4400-4412
24. Gnoth, M. J.; Rudloff, S.; Kunz, C.; Kinne, R. K. J. Biol. Chem. 2001, 276, 34363-34370
25. Ward, R. E.; Ninonuevo, M.; Mills, D. A.; Lebrilla, C. B.; German, J. B. Appl. Environ. Microbiol. 2006, 72, 4497-4499
26. Ninonuevo, M. R.; Park, Y.; Yin, H.; Zhang, J.; Ward, R. E.; Clowers, B. H.; German, J. B.; Freeman, S. L.; Killeen, K.; Grimm, R.; Lebrilla, C. B. J. Agric. Food Chem. 2006, 54, 7471-7480
27. Wu, S.; Tao, N.; German, J. B.; Grimm, R.; Lebrilla, C. B. J. Proteome Res. 2010, 9, 4138-4151
28. Wu, S.; Grimm, R.; German, J. B.; Lebrilla, C. B. J. Proteome Res. 2011, 10, 856-868
29. Hsu, J. L.; Huang, S. Y.; Chow, N. H.; Chen, S. H. Anal. Chem. 2003, 75, 6843-6852
30. Guo, K.; Li, L. Anal. Chem. 2010, 82, 8789-8793
31. Katajamaa, M.; Miettinen, J.; Oresic, M. Bioinformatics 2006, 22, 634-636
32. Pluskal, T.; Castillo, S.; Villar-Briones, A.; Oresic, M. BMC Bioinf. 2010, 11, 395
33. May, D.; Law, W.; Fitzgibbon, M.; Fang, Q.; McIntosh, M. J. Proteome Res. 2009, 8, 3212-7
34. http://www.ms-utils.org/wiki/pmwiki.php/Main/SoftwareList (accessed July 14, 2012).
35. Yoshida, E.; Sakurama, H.; Kiyohara, M.; Nakajima, M.; Kitaoka, M.; Ashida, H.; Hirose, J.; Katayama, T.; Yamamoto, K.; Kumagai, H. Glycobiology 2012, 22, 361-368
36. Orchard, S.; Taylor, C. F.; Hermjakob, H.; Weimin, Z.; Julian, R. K., Jr.; Apweiler, R. Proteomics 2004, 4, 2363-2365
37. Ward, R. E.; Ninonuevo, M.; Mills, D. A.; Lebrilla, C. B.; German, J. B. Mol. Nutr. Food Res. 2007, 51, 1398-1405
38. Locascio, R. G.; Ninonuevo, M. R.; Kronewitter, S. R.; Freeman, S. L.; German, J. B.; Lebrilla, C. B.; Mills, D. A. Microb. Biotechnol. 2009, 2, 333-342
39. Marcobal, A.; Barboza, M.; Froehlich, J. W.; Block, D. E.; German, J. B.; Lebrilla, C. B.; Mills, D. A. J. Agric. Food Chem. 2010, 58, 5334-5340
40. Takegawa, Y.; Deguchi, K.; Ito, S.; Yoshioka, S.; Sano, A.; Yoshinari, K.; Kobayashi, K.; Nakagawa, H.; Monde, K.; Nishimura, S. Anal. Chem. 2004, 76, 7294-7303
41. Pabst, M.; Bondili, J. S.; Stadlmann, J.; Mach, L.; Altmann, F. Anal. Chem. 2007, 79, 5051-5057
42. Guo, K.; Li, L. Anal. Chem. 2009, 81, 3919-3932
43. Katajamaa, M.; Oresic, M. BMC Bioinf. 2005, 6, 179
44. Lange, E. Analysis of Mass Spectrometric Data Peak Picking and Map Alignment. Thesis major: Mathematics and Computer Science, Freie Universtaet Berlin, Berlin, Germany, 2008.
45. Yao, W.; Yin, X.; Hu, Y. J Chromatogr., A 2007, 1160, 254-262
46. Vivo-Truyols, G.; Torres-Lapasio, J. R.; van Nederkassel, A. M.; Vander Heyden, Y.; Massart, D. L. J. Chromatogr., A 2005, 1096, 133-145
47. Vivo-Truyols, G.; Torres-Lapasio, J. R.; van Nederkassel, A. M.; Vander Heyden, Y.; Massart, D. L. J. Chromatogr., A 2005, 1096, 146-155
48. Nikitas, P.; Pappa-Louisi, A.; Papageorgiou, A. J. Chromatogr., A 2001, 912, 13-29
49. Lacey, R. Anal. Chem. 1986, 58, 1404-1410
50. Stevenson, P. G.; Gritti, F.; Guiochon, G. J. Chromatogr., A 2011, 1218, 8255-8263
51. Qiu, R.; Regnier, F. E. Anal. Chem. 2005, 77, 7225-7231
52. Davies, M. J.; Smith, K. D.; Carruthers, R. A.; Chai, W.; Lawson, A. M.; Hounsell, E. F. J. Chromatogr. 1993, 646, 317-326
53. Forgacs, E. J. Chromatogr., A 2002, 975, 229-243
54. Itoh, S.; Kawasaki, N.; Ohta, M.; Hyuga, M.; Hyuga, S.; Hayakawa, T. J. Chromatogr., A 2002, 968, 89-100
55. Hua, S.; Lebrilla, C.; An, H. J. Bioanalysis 2011, 3, 2573-2585
56. Smith, C. A.; Want, E. J.; OMaille, G.; Abagyan, R.; Siuzdak, G. Anal. Chem. 2006, 78, 779-787