Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities

Journal of Bacteriology

Volumn 194, Issue 16, 2012, Pages 4461-4462

  Kostka, Joel E ^a,f   Green, Stefan J ^b   Rishishwar, Lavanya ^a   Prakash, Om ^c   Katz, Lee S ^d   Mariño Ramírez, Leonardo ^e,f   King Jordan, I ^a,f   Munk, Christine ^g   Ivanova, Natalia ^g   Mikhailova, Natalia ^g   Watson, David B ^h   Brown, Steven D ⁱ   Palumbo, Anthony V ⁱ   Brooks, Scott C ^h  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

^b UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^c NATIONAL CENTRE FOR CELL SCIENCE   (India)

^d CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

^f PanAmerican Bioinformatics Institute   (Colombia)

^g DOE JOINT GENOME INSTITUTE   (United States)

^h OAK RIDGE NATIONAL LABORATORY   (United States)

ⁱ OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NITRATE; NITROGEN;

BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATION; DENITRIFICATION; GENE SEQUENCE; MICROBIAL COMMUNITY; NONHUMAN; NOTE; PHENOTYPE; PRIORITY JOURNAL; RHODANOBACTER DENITRIFICANS; RHODANOBACTER FULVUS; RHODANOBACTER SPATHIPHYLLI; RHODANOBACTER THIOOXYDANS; SEQUENCE ANALYSIS; SOIL MICROFLORA; TERRESTRIAL SPECIES;

DENITRIFICATION; DNA, BACTERIAL; GENOME, BACTERIAL; METABOLIC NETWORKS AND PATHWAYS; MOLECULAR SEQUENCE DATA; NITRATES; NITROGEN; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; XANTHOMONADACEAE;

RHODANOBACTER;

EID: 84866335245     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00871-12     Document Type: Note

References (17)

1. An DS, Lee HG, Lee ST, Im WT. 2009. Rhodanobacter ginsenosidimutans sp. nov., isolated from soil of a ginseng field in South Korea. Int. J. Syst. Evol. Microbiol. 59:691-694.
2. Aziz RK, et al. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
3. Bennett, S. 2004. Solexa Ltd. Pharmacogenomics 5:433-438.
4. Bui TP, Kim YJ, Kim H, Yang DC. 2010. Rhodanobacter soli sp. nov., isolated from soil of a ginseng field. Int. J. Syst. Evol. Microbiol. 60:2935-2939.
5. De Clercq D, et al. 2006. Rhodanobacter spathiphylli sp. nov., a gammaproteobacterium isolated from the roots of Spathiphyllum plants grown in a compost-amended potting mix. Int. J. Syst. Evol. Microbiol. 56:1755-1759.
6. Elkins JG, et al. 2010. Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T. J. Bacteriol. 192: 6099-6100.
7. Green SJ, et al. 2010. Denitrifying bacteria isolated from terrestrial subsurface sediments exposed to mixed-waste contamination. Appl. Environ. Microbiol. 76:3244-3254.
8. Green SJ, et al. 2012. Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site. Appl. Environ. Microbiol. 78:1039-1047.
9. Im WT, Lee ST, Yokota A. 2004. Rhodanobacter fulvus sp. nov., a β-galactosidase-producing gammaproteobacterium. J. Gen. Appl. Microbiol. 50:143-147.
10. Jordan IK, et al. 2011. Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus. J. Bacteriol. 193:5879-5880.
11. Kislyuk AO, et al. 2010. A computational genomics pipeline for prokaryotic sequencing projects. Bioinformatics 26:1819-1826.
12. Nalin R, Simonet P, Vogel TM, Normand P. 1999. Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium. Int. J. Syst. Bacteriol. 49:19-23.
13. Prakash O, et al. 25 November 2011, posting date. Description of Rhodanobacter denitrificans sp. nov., isolated from uranium and nitrate contaminated subsurface sediment. Int. J. Syst. Evol. Microbiol. doi:10.1099/ijs.0.035840-0.
14. van den Heuvel RN, van der Biezen E, Jetten MSM, Hefting MM, Kartal B. 2010. Denitrification at pH 4 by a soil-derived Rhodanobacterdominated community. Environ. Microbiol. 12:3264-3271.
15. Wang L, et al. 2011. Rhodanobacter panaciterrae sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a ginseng field. Int. J. Syst. Evol. Microbiol. 61:3028-3032.
16. Weon HY, et al. 2007. Rhodanobacter ginsengisoli sp. nov. and Rhodanobacter terrae sp. nov., isolated from soil cultivated with Korean ginseng. Int. J. Syst. Evol. Microbiol. 57:2810-2813.
17. Woo SG, Srinivasan S, Kim MK, Lee M. 6 January 2012, posting date. Rhodanobacter caeni sp. nov., a denitrifying bacterium isolated from sludge in a sewage disposal plant. Int. J. Syst. Evol. Microbiol. doi:10.1099/ijs.0.033365-0.