-
1
-
-
0035107550
-
Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans
-
Andolfatto, P. 2001. Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans. Mol. Biol. Evol. 18: 279-290.
-
(2001)
Mol. Biol. Evol
, vol.18
, pp. 279-290
-
-
Andolfatto, P.1
-
2
-
-
17644400408
-
-
Princeton University Press, Princeton, NJ
-
Arnqvist, G. and Rowe, L. 2005. Sexual conflict. Princeton University Press, Princeton, NJ.
-
(2005)
Sexual conflict
-
-
Arnqvist, G.1
Rowe, L.2
-
3
-
-
0034705169
-
Reduced X-linked nucleotide polymorphism in Drosophila simulans
-
Begun, D.J. and Whitley, P. 2000. Reduced X-linked nucleotide polymorphism in Drosophila simulans. Proc. Natl. Acad. Sci. 97: 5960-5965.
-
(2000)
Proc. Natl. Acad. Sci
, vol.97
, pp. 5960-5965
-
-
Begun, D.J.1
Whitley, P.2
-
4
-
-
0030759288
-
Discordant phylogeographic patterns between the Y chromosome and mitochondrial DNA in the house mouse: Selection on the Y chromosome?
-
Boissinot, S. and Boursot, P. 1997. Discordant phylogeographic patterns between the Y chromosome and mitochondrial DNA in the house mouse: Selection on the Y chromosome? Genetics 146: 1019-1034.
-
(1997)
Genetics
, vol.146
, pp. 1019-1034
-
-
Boissinot, S.1
Boursot, P.2
-
5
-
-
0027333471
-
The evolution of house mice
-
Boursot, P., Auffray, J.C., Brittondavidian, J., and Bonhomme, F. 1993. The evolution of house mice. Annu. Rev. Ecol. Syst. 24: 119-152.
-
(1993)
Annu. Rev. Ecol. Syst
, vol.24
, pp. 119-152
-
-
Boursot, P.1
Auffray, J.C.2
Brittondavidian, J.3
Bonhomme, F.4
-
6
-
-
0023501735
-
The relative rates of evolution of sex chromosomes and autosomes
-
Charlesworth, B., Coyne, J.A., and Barton, N. 1987. The relative rates of evolution of sex chromosomes and autosomes. Am. Nat. 130: 113-146.
-
(1987)
Am. Nat
, vol.130
, pp. 113-146
-
-
Charlesworth, B.1
Coyne, J.A.2
Barton, N.3
-
7
-
-
0034283844
-
Transcription, genomes, function
-
Cho, R.J. and Campbell, M.J. 2000. Transcription, genomes, function. Trends Genet. 16: 409-415.
-
(2000)
Trends Genet
, vol.16
, pp. 409-415
-
-
Cho, R.J.1
Campbell, M.J.2
-
8
-
-
0030272557
-
Hybrid sterility in the mouse
-
Forejt, J. 1996. Hybrid sterility in the mouse. Trends Genet. 12: 412-417.
-
(1996)
Trends Genet
, vol.12
, pp. 412-417
-
-
Forejt, J.1
-
9
-
-
3242792491
-
Mouse biodiversity in the genomic era
-
Galtier, N., Bonhomme, F., Moulia, C., Belkhir, K., Caminade, P., Desmarais, E., Duquesne, J.J., Orth, A., Dod, B., and Boursot, P. 2004. Mouse biodiversity in the genomic era. Cytogenet. Genome Res. 105: 385-394.
-
(2004)
Cytogenet. Genome Res
, vol.105
, pp. 385-394
-
-
Galtier, N.1
Bonhomme, F.2
Moulia, C.3
Belkhir, K.4
Caminade, P.5
Desmarais, E.6
Duquesne, J.J.7
Orth, A.8
Dod, B.9
Boursot, P.10
-
10
-
-
19844365733
-
Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
-
Gilad, Y., Rifkin, S.A., Bertone, P., Gerstein, M., and White, K.P. 2005. Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles. Genome Res. 15: 674-680.
-
(2005)
Genome Res
, vol.15
, pp. 674-680
-
-
Gilad, Y.1
Rifkin, S.A.2
Bertone, P.3
Gerstein, M.4
White, K.P.5
-
11
-
-
33644855479
-
Expression profiling in primates reveals a rapid evolution of human transcription factors
-
Gilad, Y., Oshlack, A., Smyth, G.K., Speed, T.P., and White, K.P. 2006. Expression profiling in primates reveals a rapid evolution of human transcription factors. Nature 440: 242-245.
-
(2006)
Nature
, vol.440
, pp. 242-245
-
-
Gilad, Y.1
Oshlack, A.2
Smyth, G.K.3
Speed, T.P.4
White, K.P.5
-
12
-
-
16344383665
-
Rates of protein evolution are positively correlated with developmental timing of expression during mouse spermatogenesis
-
Good, J.M. and Nachman, M.W. 2005. Rates of protein evolution are positively correlated with developmental timing of expression during mouse spermatogenesis. Mol. Biol. Evol. 22: 1044-1052.
-
(2005)
Mol. Biol. Evol
, vol.22
, pp. 1044-1052
-
-
Good, J.M.1
Nachman, M.W.2
-
13
-
-
0037213794
-
Wild mice: An ever-increasing contribution to a popular mammalian model
-
Guenet, J.L. and Bonhomme, F. 2003. Wild mice: An ever-increasing contribution to a popular mammalian model. Trends Genet. 19: 24-31.
-
(2003)
Trends Genet
, vol.19
, pp. 24-31
-
-
Guenet, J.L.1
Bonhomme, F.2
-
14
-
-
0003375834
-
Unstable adjustments as affected by isolation
-
Gulick, J.T. 1890. Unstable adjustments as affected by isolation. Nature 42: 28-29.
-
(1890)
Nature
, vol.42
, pp. 28-29
-
-
Gulick, J.T.1
-
15
-
-
22144447840
-
Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees
-
Khaitovich, P., Hellmann, I., Enard, W., Nowick, K., Leinweber, M., Franz, H., Weiss, G., Lachmann, M., and Pääbo, S. 2005. Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science 309: 1850-1854.
-
(2005)
Science
, vol.309
, pp. 1850-1854
-
-
Khaitovich, P.1
Hellmann, I.2
Enard, W.3
Nowick, K.4
Leinweber, M.5
Franz, H.6
Weiss, G.7
Lachmann, M.8
Pääbo, S.9
-
16
-
-
2642558614
-
The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation
-
Khil, P.P., Smirnova, N.A., Romanienko, P.J., and Camerini-Otero, R.D. 2004. The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation. Nat. Genet. 36: 642-646.
-
(2004)
Nat. Genet
, vol.36
, pp. 642-646
-
-
Khil, P.P.1
Smirnova, N.A.2
Romanienko, P.J.3
Camerini-Otero, R.D.4
-
17
-
-
13244251285
-
Rates of divergence in gene expression profiles of primates, mice, and flies: Stabilizing selection and variability among functional categories
-
Lemos, B., Meiklejohn, C.D., Caceres, M., and Hartl, D.L. 2005. Rates of divergence in gene expression profiles of primates, mice, and flies: Stabilizing selection and variability among functional categories. Evolution Int. J. Org. Evolution 59: 126-137.
-
(2005)
Evolution Int. J. Org. Evolution
, vol.59
, pp. 126-137
-
-
Lemos, B.1
Meiklejohn, C.D.2
Caceres, M.3
Hartl, D.L.4
-
18
-
-
0042692890
-
Rapid evolution of male-biased gene expression in Drosophila
-
Meiklejohn, C.D., Parsch, J., Ranz, J.M., and Hartl, D.L. 2003. Rapid evolution of male-biased gene expression in Drosophila. Proc. Natl. Acad. Sci. 100: 9894-9899.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 9894-9899
-
-
Meiklejohn, C.D.1
Parsch, J.2
Ranz, J.M.3
Hartl, D.L.4
-
19
-
-
13444312083
-
The PANTHER database of protein families, subfamilies, functions and pathways
-
Mi, H., Lazareva-Ulitsky, B., Loo, R., Kejariwal, A., Vandergriff, J., Rabkin, S., Guo, N., Muruganujan, A., Doremieux, O., Campbell, M.J., et al. 2005. The PANTHER database of protein families, subfamilies, functions and pathways. Nucleic Acids Res. 33: D284-D288.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mi, H.1
Lazareva-Ulitsky, B.2
Loo, R.3
Kejariwal, A.4
Vandergriff, J.5
Rabkin, S.6
Guo, N.7
Muruganujan, A.8
Doremieux, O.9
Campbell, M.J.10
-
20
-
-
0035400607
-
Sexual selection and speciation
-
Panhuis, T.M., Butlin, R., Zuk, M., and Tregenza, T. 2001. Sexual selection and speciation. Trends Ecol. Evol. 16: 364-371.
-
(2001)
Trends Ecol. Evol
, vol.16
, pp. 364-371
-
-
Panhuis, T.M.1
Butlin, R.2
Zuk, M.3
Tregenza, T.4
-
21
-
-
0346460960
-
Paucity of genes on the Drosophila X chromosome showing male-biased expression
-
Parisi, M., Nuttall, R., Naiman, D., Bouffard, G., Malley, J., Andrews, J., Eastman, S., and Oliver, B. 2003. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 299: 697-700.
-
(2003)
Science
, vol.299
, pp. 697-700
-
-
Parisi, M.1
Nuttall, R.2
Naiman, D.3
Bouffard, G.4
Malley, J.5
Andrews, J.6
Eastman, S.7
Oliver, B.8
-
22
-
-
0035986885
-
Searching for evidence of positive selection in the human genome using patterns of microsatellite variability
-
Payseur, B.A., Cutter, A.D., and Nachman, M.W. 2002. Searching for evidence of positive selection in the human genome using patterns of microsatellite variability. Mol. Biol. Evol. 19: 1143-1153.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 1143-1153
-
-
Payseur, B.A.1
Cutter, A.D.2
Nachman, M.W.3
-
23
-
-
0030758233
-
Conspecific sperm precedence in Drosophila
-
Price, C.S.C. 1997. Conspecific sperm precedence in Drosophila. Nature 388: 663-666.
-
(1997)
Nature
, vol.388
, pp. 663-666
-
-
Price, C.S.C.1
-
24
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush, J. 2002. Microarray data normalization and transformation. Nat. Genet. (Suppl.) 32: 496-501.
-
(2002)
Nat. Genet. (Suppl.)
, vol.32
, pp. 496-501
-
-
Quackenbush, J.1
-
25
-
-
29244468298
-
Uncovering evolutionary patterns of gene expression using microarrays
-
Ranz, J.M. and Machado, C.A. 2006. Uncovering evolutionary patterns of gene expression using microarrays. Trends Ecol. Evol. 21: 29-37.
-
(2006)
Trends Ecol. Evol
, vol.21
, pp. 29-37
-
-
Ranz, J.M.1
Machado, C.A.2
-
26
-
-
0037504137
-
Sex-dependent gene expression and evolution of the Drosophila transcriptome
-
Ranz, J.M., Castillo-Davis, C.I., Meiklejohn, C.D., and Hartl, D.L. 2003. Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 300: 1742-1745.
-
(2003)
Science
, vol.300
, pp. 1742-1745
-
-
Ranz, J.M.1
Castillo-Davis, C.I.2
Meiklejohn, C.D.3
Hartl, D.L.4
-
27
-
-
0037433040
-
Identifying differentially expressed genes using false discovery rate controlling procedures
-
Reiner, A., Yekutieli, D., and Benjamini, Y. 2003. Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 19: 368-375.
-
(2003)
Bioinformatics
, vol.19
, pp. 368-375
-
-
Reiner, A.1
Yekutieli, D.2
Benjamini, Y.3
-
28
-
-
0037313182
-
Evolution of gene expression in the Drosophila melanogaster subgroup
-
Rifkin, S.A., Kim, J., and White, K.P. 2003. Evolution of gene expression in the Drosophila melanogaster subgroup. Nat. Genet. 33: 138-144.
-
(2003)
Nat. Genet
, vol.33
, pp. 138-144
-
-
Rifkin, S.A.1
Kim, J.2
White, K.P.3
-
29
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed, A.I., Sharov, V., White, J., Li, J., Liang, W., Bhagabati, N., Braisted, J., Klapa, M., Currier, T., Thiagarajan, M., et al. 2003. TM4: A free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
Braisted, J.7
Klapa, M.8
Currier, T.9
Thiagarajan, M.10
-
30
-
-
0041317004
-
Natural selection drives Drosophila immune system evolution
-
Schlenke, T.A. and Begun, D.J. 2003. Natural selection drives Drosophila immune system evolution. Genetics 164: 1471-1480.
-
(2003)
Genetics
, vol.164
, pp. 1471-1480
-
-
Schlenke, T.A.1
Begun, D.J.2
-
32
-
-
2942744560
-
Genetic analysis of X-linked hybrid sterility in the house mouse
-
Storchova, R., Gregorova, S., Buckiova, D., Kyselova, V., Divina, P., and Forejt, J. 2004. Genetic analysis of X-linked hybrid sterility in the house mouse. Mamm. Genome 15: 515-524.
-
(2004)
Mamm. Genome
, vol.1
, Issue.5
, pp. 515-524
-
-
Storchova, R.1
Gregorova, S.2
Buckiova, D.3
Kyselova, V.4
Divina, P.5
Forejt, J.6
-
33
-
-
85047700164
-
The rapid evolution of reproductive proteins
-
Swanson, W.J. and Vacquier, V.D. 2002. The rapid evolution of reproductive proteins. Nat. Rev. Genet. 3: 137-144.
-
(2002)
Nat. Rev. Genet
, vol.3
, pp. 137-144
-
-
Swanson, W.J.1
Vacquier, V.D.2
-
34
-
-
0024392448
-
Positive Darwinian selection observed at the variable-region genes of immunoglobulins
-
Tanaka, T. and Nei, M. 1989. Positive Darwinian selection observed at the variable-region genes of immunoglobulins. Mol. Biol. Evol. 6: 447-459.
-
(1989)
Mol. Biol. Evol
, vol.6
, pp. 447-459
-
-
Tanaka, T.1
Nei, M.2
-
35
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher, V.G., Tibshirani, R., and Chu, G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. 98: 5116-5121.
-
(2001)
Proc. Natl. Acad. Sci
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
36
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
Yang, Y.H. and Speed, T. 2002. Design issues for cDNA microarray experiments. Nat. Rev. Genet. 3: 579-588.
-
(2002)
Nat. Rev. Genet
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
37
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J., and Speed, T.P. 2002. Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30: e15.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
38
-
-
33746681910
-
Tissue-specific expression and regulation of sexually dimorphic genes in mice
-
Yang, X., Schadt, E.E., Wang, S., Wang, H., Arnold, A.P., Ingram-Drake, L., Drake, T.A., and Lusis, A.J. 2006. Tissue-specific expression and regulation of sexually dimorphic genes in mice. Genome Res. 16: 995-1004.
-
(2006)
Genome Res
, vol.16
, pp. 995-1004
-
-
Yang, X.1
Schadt, E.E.2
Wang, S.3
Wang, H.4
Arnold, A.P.5
Ingram-Drake, L.6
Drake, T.A.7
Lusis, A.J.8
|