메뉴 건너뛰기




Volumn 3, Issue JUN, 2012, Pages

pep2pro: The high-throughput proteomics data processing, analysis, and visualization tool

Author keywords

Database; MzIdentML; pep2pro; Plant proteomics; Standard format

Indexed keywords


EID: 84866054140     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2012.00123     Document Type: Review
Times cited : (29)

References (20)
  • 4
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • Elias, J. E., and Gygi, S. P. (2007). Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 4, 207-214.
    • (2007) Nat. Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 5
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
    • Eng, J., Mccormack, A., and Yates, J. (1994). An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. J. Am. Soc. Mass Spectrom. 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.1    McCormack, A.2    Yates, J.3
  • 6
    • 79961192255 scopus 로고    scopus 로고
    • Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves
    • Gfeller, A., Baerenfaller, K., Loscos, J., Chételat, A., Baginsky, S., and Farmer, E. E. (2011). Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves. Plant Physiol. 156, 1797-1807.
    • (2011) Plant Physiol. , vol.156 , pp. 1797-1807
    • Gfeller, A.1    Baerenfaller, K.2    Loscos, J.3    Chételat, A.4    Baginsky, S.5    Farmer, E.E.6
  • 7
    • 84860331423 scopus 로고    scopus 로고
    • jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats
    • Griss, J., Reisinger, F., Hermjakob, H., and Vizcaino, J. A. (2012). jmzReader: a Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats. Proteomics 12, 795-798.
    • (2012) Proteomics , vol.12 , pp. 795-798
    • Griss, J.1    Reisinger, F.2    Hermjakob, H.3    Vizcaino, J.A.4
  • 8
    • 70149084269 scopus 로고    scopus 로고
    • Deterministic protein inference for shotgun proteomics data provides new insights intoArabidopsis pollen development and function
    • Grobei, M. A., Qeli, E., Brunner, E., Rehrauer, H., Zhang, R., Roschitzki, B., Basler, K., Ahrens, C. H., and Grossniklaus, U. (2009). Deterministic protein inference for shotgun proteomics data provides new insights intoArabidopsis pollen development and function. Genome Res. 19, 1786-1800.
    • (2009) Genome Res. , vol.19 , pp. 1786-1800
    • Grobei, M.A.1    Qeli, E.2    Brunner, E.3    Rehrauer, H.4    Zhang, R.5    Roschitzki, B.6    Basler, K.7    Ahrens, C.H.8    Grossniklaus, U.9
  • 11
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A., Nesvizhskii, A. I., Kolker, E., and Aebersold, R. (2002). Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74, 5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1    Nesvizhskii, A.I.2    Kolker, E.3    Aebersold, R.4
  • 13
    • 54049090766 scopus 로고    scopus 로고
    • Selected reaction monitoring for quantitative proteomics: A tutorial
    • Lange, V., Picotti, P., Domon, B., and Aebersold, R. (2008). Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 4, 222.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 222
    • Lange, V.1    Picotti, P.2    Domon, B.3    Aebersold, R.4
  • 14
    • 27644555055 scopus 로고    scopus 로고
    • Interpretation of shotgun proteomic data: The protein inference problem
    • Nesvizhskii, A. I., and Aebersold, R. (2005). Interpretation of shotgun proteomic data: the protein inference problem. Mol. Cell. Proteomics 4, 1419-1440.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1419-1440
    • Nesvizhskii, A.I.1    Aebersold, R.2
  • 15
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team. Vienna: R Foundation for Statistical Computing
    • R Development Core Team. (2010). R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing.
    • (2010) R: A Language and Environment for Statistical Computing.
  • 17
    • 66649127498 scopus 로고    scopus 로고
    • Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks
    • Reiland, S., Messerli, G., Baerenfaller, K., Gerrits, B., Endler, A., Grossmann, J., Gruissem, W., and Baginsky, S. (2009). Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol. 150, 889-903.
    • (2009) Plant Physiol. , vol.150 , pp. 889-903
    • Reiland, S.1    Messerli, G.2    Baerenfaller, K.3    Gerrits, B.4    Endler, A.5    Grossmann, J.6    Gruissem, W.7    Baginsky, S.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.