Silica gel-encapsulated AtzA biocatalyst for atrazine biodegradation

Applied Microbiology and Biotechnology

Volumn 96, Issue 1, 2012, Pages 231-240

  Reátegui, Eduardo ^a   Reynolds, Erik ^b   Kasinkas, Lisa ^a   Aggarwal, Amit ^b   Sadowsky, Michael J ^b   Aksan, Alptekin ^a,b   Wackett, Lawrence P ^b  

^a University of Minnesota   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Atrazine; AtzA; Bacteria; Biodegradation; E. coli; Silica

Indexed keywords

ALKOXIDES; ATRAZINE BIODEGRADATION; ATZA; CELL VIABILITY; CELL-SPECIFIC ACTIVITIES; CURING TEMPERATURE; E. COLI; ENZYMATIC ACTIVITIES; FREE CELLS; FTIR SPECTROSCOPY; LIPID MEMBRANES; LONG LASTING; NON-VIABLE; RECOMBINANT E. COLI; RECOMBINANT ESCHERICHIA COLI; ROOM TEMPERATURE; SILICA NANOPARTICLES; SPECIFIC ACTIVITY; STRUCTURAL RIGIDITY; TIME-PERIODS; VIABLE CELLS; WATER TREATMENT FACILITIES;

ADSORPTION; BACTERIA; BIODEGRADATION; CELLS; CURING; DEGRADATION; ELECTRON MICROSCOPY; ENZYME ACTIVITY; ESCHERICHIA COLI; FOURIER TRANSFORM INFRARED SPECTROSCOPY; HERBICIDES; MICROBIOLOGY; ORGANIC POLYMERS; SILICA; SILICA GEL; SYNTHESIS (CHEMICAL);

CYTOLOGY;

ALKOXIDE; ATRAZINE; ATRAZINE CHLOROHYDROLASE; BACTERIAL ENZYME; NANOPARTICLE; OXIDE; POLYMER; RECOMBINANT ENZYME; SILICA GEL; SILICON DIOXIDE; UNCLASSIFIED DRUG; WATER;

ADSORPTION; ATRAZINE; BIODEGRADATION; CATALYST; CELL ORGANELLE; COLIFORM BACTERIUM; DECHLORINATION; ENZYME ACTIVITY; GEL; GENE EXPRESSION; LIPID; MEMBRANE; PARTICULATE MATTER; RECOMBINATION; SILICA; TEMPERATURE EFFECT;

ADSORPTION; ARTICLE; BACTERIAL CELL; BACTERIAL VIABILITY; BIOCATALYST; CELL ENCAPSULATION; CHEMICAL COMPOSITION; COLONY FORMING UNIT; CONTROLLED STUDY; DECHLORINATION; ELECTRON MICROSCOPY; ENZYME ACTIVITY; ESCHERICHIA COLI; INFRARED SPECTROSCOPY; LIPID MEMBRANE; MICROBIAL DEGRADATION; NONHUMAN; ROOM TEMPERATURE; SCANNING ELECTRON MICROSCOPY; TEMPERATURE; WATER TREATMENT;

ATRAZINE; BIOTRANSFORMATION; DRUG CARRIERS; ENZYMES; ESCHERICHIA COLI; METABOLIC ENGINEERING; MICROSCOPY, ELECTRON; SILICA GEL; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; TEMPERATURE; WATER POLLUTANTS, CHEMICAL;

ESCHERICHIA COLI;

EID: 84866042845     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3821-2     Document Type: Article

References (40)

1. Acero JL, Stemmler K, Gunten Uv (2000) Degradation kinetics of atrazine and its degradation products with ozone and OH radicals: a predictive tool for drinking water treatment. Environ Sci Technol 34:591-597
2. Acosta EJ, Steffensen MB, Tichy SE, Simanek EE (2004) Removal of water using covalent sequestration. J Agric Food Chem 52:545-549
3. Avnir D, Coradin T, Lev O, Livage J (2006) Recent bio-applications of sol-gel materials. J Mater Chem 16:1013-1030
4. Bottero JY, Khatib K, Thomas F, Jucker K, Bersillon JL, Mallevialle J (1994) Adsorption of atrazine onto zeolites and organoclays, in the presence of background organics. Water Res 28:483-490
5. de Souza ML, Wackett LP, Boundy-Mills KL, Mandelbaum RT, Sadowsky MJ (1995) Cloning, characterization and expression of a gene region from Pseudomonas sp. strain ADP involved in the dechlorination of atrazine. Appl Environ Microbiol 61:3373-3378
6. Depagne C, Roux C, Coradin T (2011) How to design cell-based biosensors using the sol-gel process. Anal Bioanal Chem 400:965-976
7. Devitt E, Wiesner MR (1998) Dialysis investigations of atrazine-organic matter interactions and the role of a divalent metal. Environ Sci Technol 32:232-237
8. Doulia D, Hourdakis A, Rigas F, Anagnostopoulus E (1997) Removal of atrazine from water by use of nonionic polymeric resins. J Environ Sci Health, Part A 32:2635-2656
9. Eisenthal R, Peterson ME, Daniel RM, Danson MJ (2006) The thermal behavior of enzyme activity: implications for biotechnology. Trends Biotechnol 24:289-292
10. Ferrer ML, Yuste L, Rojo F, del Monte F (2003) Biocompatible sol-gel route for encapsulation of living bacteria in organically modified silica matrices. Chem Mater 15:3614-3618
11. Goswami K, Green RE (1971) Microbial degradation of the herbicide atrazine and its 2-hydroxyanalog in submerged soils. Environ Sci Technol 5:426-429
12. Govantes F, Porrúa O, García-González V, Santero E (2009) Atrazine biodegradation in the lab and in the field: enzymatic activities and gene regulation. J Microbiol Biotechnol 2:178-185
13. Hosticka B, Norris PM, Brenizer JS, Daitch CE (1998) Gas flow through aerogels. J Non-Cryst Solids 225:293-297
14. Kauffmann C, Mandelbaum RT (1998) Entrapment of atrazine chlorohydrolase in sol-gel glass matrix. J Biotechnol 62:168-176
15. Le Baron HM, McFarland JE, Burnside OC (2008) The Triazine Herbicides: 50 Years Revolutionizing Agriculture. Elsevier, Oxford, UK
16. Lima D, Viana P, Andre S, Chelinho S, Costa C, Ribeiro R, Sousa JP (2009) Evaluating a bioremediation tool for atrazine contaminated soils in open soil microcosms: the effectiveness of bioaugmentation and biostimulation approaches. Chemosphere 74:187-192
17. Lin CH, Lerch RN, Kremer RJ, Garret HE (2011) Stimulated rhizodegradation of atrazine by selected plant species. J Environ Qual 40:1113-1121
18. Livage J, Coradin T, Roux C (2001) Encapsulation of biomolecules in silica gels. J Phys Condens Matter 13:R673-R691
19. Macias-Flores A, Tafoya-Garnica A, Ruiz-Ordaz N, Salmeron-Alcocer A, Juarez-Ramirez C, Ahuatzi-Chacon D, Mondragon-Parada ME, Galindez-Mayer J (2009) Atrazine biodegradation by a bacterial community immobilized in two types of packed-bed biofilm reactors. World J Microbiol Biotechnol 25:1995-2204
20. Majewska-Nowak K, Kabsch-Korutowicz M, Dodz M, Winnicki T (2002) The influence of organic carbon concentration on atrazine removal by UF membranes. Desalination 147:177-122
21. Mandelbaum RT, Wackett LP, Allan DL (1993) Rapid hydrolysis of atrazine to hydroxyatrazine by soil bacteria. Environ Sci Technol 27:1943-1946
22. Mandelbaum RT, Allan DL, Wackett LP (1995) Isolation and characterization of a Pseudomonas sp. that mineralizes the s-triazine herbicide atrazine. Appl Environ Microbiol 61:1451-1457
23. Martinez B, Tomkins J, Wackett LP, Wing R, Sadowsky M (2001) Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J Bacteriol 183:5684-5697
24. Nassif N, Bouvet O, Rager MN, Roux C, Coradin T, Livage J (2002) Living bacteria in silica gels. Nat Mater 1:42-44
25. Nassif N, Roux C, Coradin T, Bouvet OMM, Livage J (2004) Bacteria quorum sensing in silica matrix. J Mater Chem 14:2264-2268
26. 2. Appl Catal, B 51:107-116
27. Pelekani C, Snoeyink VL (2000) Competitive adsorption between atrazine and methylene blue on activated carbon: the importance of pore size distribution. Carbon 38:1423-1436
28. Perullini M, Amoura M, Roux C, Coradin T, Livage J, Japas ML, Jobbagy M, Bilmes SA (2011) Improving silica matrices for encapsulation of Escherichia coli using osmoprotectors. J Mater Chem 21:4546-4552
29. Reátegui E, Aksan A (2009) Effects of the low temperature transitions of confined water on the structure of isolated and cytoplasmic proteins. J Phys Chem B 113:13048-13060
30. Reátegui E, Aksan A (2010) Effects of water on the structure and low/high temperature stability of confined proteins. Phys Chem Chem Phys 12:10161-10172
31. Rietti-Shati M, Ronen D, Mandelbaum RT (1996) Atrazine degradation by Pseudomonas strain ADP entrapped in sol-gel glass. J Sol-Gel Sci Technol 7:77-79
32. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning; A Laboratory Manual, 2nd Ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
33. Scott C, Lewis SE, Milla R, Taylor MC, Rodgers AJW, Dumsday G, Brodie JE, Oakeshott JG, Russell RJ (2010) A free-enzyme catalyst for the bioremediation of environmental atrazine contamination. J Environ Manag 91:2075-2078
34. Seffernick JL, Reynolds E, Fedorov AA, Fedorov E, Almo SC, Sadowsky MJ, Wackett LP (2010) X-ray structure and mutational analysis of the atrazine chlorohydrolase TrzN. J Biol Chem 285:30606-30614
35. Silva E, Fialho AM, Sá-Correia I, Burns RG, Shaw LJ (2004) Combined bioaugmentation and biostimulation to cleanup soil contaminated with high concentrations of atrazine. Environ Sci Technol 38:632-637
36. Strong LC, McTavish H, Sadowsky MJ, Wackett LP (2000) Field-scale remediation of atrazine-contaminated soil using recombinant Escherichia coli expressing atrazine chlorohydrolase. Environ Microbiol 2:91-98
37. Topp E, Mulbry WM, Zhu H, Nour SM, Cuppels D (2000) Characterization of s-triazine herbicide metabolism by a Nocardioides sp. isolated from agricultural soils. Appl Environ Microbiol 66:3134-3141
38. Wang L, Samac DA, Shapir N, Wackett LP, Vance CP, Olszewski NE, Sadowsky MJ (2005) Biodegradation of atrazine in transgenic plants expressing a modified bacterial atrazine chlorohydrolase (atzA) gene. J Plant Biotechnol 3:475-486
39. Yue Z, Economy J, Rajagopalan K, Bordson G, Piwoni M, Ding L, Snoeyink VL, Marinas BJ (2006) Chemical activated carbon on a fiberglass substrate for removal of trace atrazine from water. J Mater Chem 16:3375-3380
40. Zhu L, Ma T, Wang J, Xie H, Wang J, Xin C, Shao B (2011) Enhancement of atrazine removal by free and immobilized Arthrobacter sp. HB-5 in soil and wastewater. Soil Sediment Contam 20:87-97