메뉴 건너뛰기




Volumn 7, Issue 9, 2012, Pages

Miiuy Croaker Transferrin Gene and Evidence for Positive Selection Events Reveal Different Evolutionary Patterns

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFERRIN;

EID: 84866038962     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0043936     Document Type: Article
Times cited : (40)

References (54)
  • 1
    • 13544254423 scopus 로고    scopus 로고
    • Transferrin: structure, function and potential therapeutic actions
    • Gomme PT, McCann KB, Bertolini J, (2005) Transferrin: structure, function and potential therapeutic actions. Drug discovery today 10: 267-273.
    • (2005) Drug Discovery Today , vol.10 , pp. 267-273
    • Gomme, P.T.1    McCann, K.B.2    Bertolini, J.3
  • 4
    • 33947578107 scopus 로고    scopus 로고
    • Isolation and characterisation of crocodile and python ovotransferrins
    • Ciuraszkiewicz J, Olczak M, Watorek W, (2007) Isolation and characterisation of crocodile and python ovotransferrins. Acta Biochim Pol 54: 175-182.
    • (2007) Acta Biochim Pol , vol.54 , pp. 175-182
    • Ciuraszkiewicz, J.1    Olczak, M.2    Watorek, W.3
  • 5
    • 2142717415 scopus 로고    scopus 로고
    • Expression analyses of zebrafish transferrin, ifabp, and elastaseB mRNAs as differentiation markers for the three major endodermal organs: liver, intestine, and exocrine pancreas
    • Mudumana SP, Wan H, Singh M, Korzh V, Gong Z, (2004) Expression analyses of zebrafish transferrin, ifabp, and elastaseB mRNAs as differentiation markers for the three major endodermal organs: liver, intestine, and exocrine pancreas. Dev Dyn 230: 165-173.
    • (2004) Dev Dyn , vol.230 , pp. 165-173
    • Mudumana, S.P.1    Wan, H.2    Singh, M.3    Korzh, V.4    Gong, Z.5
  • 7
    • 33645111877 scopus 로고    scopus 로고
    • Natural resistance, iron and infection: a challenge for clinical medicine
    • Bullen JJ, Rogers HJ, Spalding PB, Ward CG, (2006) Natural resistance, iron and infection: a challenge for clinical medicine. J med microbiol 55: 251-258.
    • (2006) J Med Microbiol , vol.55 , pp. 251-258
    • Bullen, J.J.1    Rogers, H.J.2    Spalding, P.B.3    Ward, C.G.4
  • 8
    • 0027453014 scopus 로고
    • Transferrin in a cockroach: molecular cloning, characterization, and suppression by juvenile hormone
    • Jamroz RC, Gasdaska JR, Bradfield JY, Law JH, (1993) Transferrin in a cockroach: molecular cloning, characterization, and suppression by juvenile hormone. Proc Natl Acad Sci USA 90: 1320-1324.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 1320-1324
    • Jamroz, R.C.1    Gasdaska, J.R.2    Bradfield, J.Y.3    Law, J.H.4
  • 9
    • 0030817280 scopus 로고    scopus 로고
    • Mosquito transferrin, an acute-phase protein that is up-regulated upon infection
    • Yoshiga T, Hernandez VP, Fallon AM, Law JH, (1997) Mosquito transferrin, an acute-phase protein that is up-regulated upon infection. Proc Natl Acad Sci USA 94: 12337-12342.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12337-12342
    • Yoshiga, T.1    Hernandez, V.P.2    Fallon, A.M.3    Law, J.H.4
  • 10
    • 0011977181 scopus 로고
    • Organization of the human transferrin gene: direct evidence that it originated by gene duplication
    • Park I, Schaeffer E, Sidoli A, Baralle FE, Cohen GN, et al. (1985) Organization of the human transferrin gene: direct evidence that it originated by gene duplication. Proc Natl Acad Sci USA 82: 3149-3153.
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 3149-3153
    • Park, I.1    Schaeffer, E.2    Sidoli, A.3    Baralle, F.E.4    Cohen, G.N.5
  • 12
    • 0037022176 scopus 로고    scopus 로고
    • A new method for obtaining human transferrin C-lobe in the native conformation: preparation and properties
    • Zak O, Aisen P, (2002) A new method for obtaining human transferrin C-lobe in the native conformation: preparation and properties. Biochem 41: 1647-1653.
    • (2002) Biochem , vol.41 , pp. 1647-1653
    • Zak, O.1    Aisen, P.2
  • 13
    • 24344475974 scopus 로고    scopus 로고
    • Evolution of the transferrin family: conservation of residues associated with iron and anion binding
    • Lambert LA, Perri H, Halbrooks PJ, Mason AB, (2005) Evolution of the transferrin family: conservation of residues associated with iron and anion binding. Comp Biochem Physiol B Biochem Mol Biol 142: 129-141.
    • (2005) Comp Biochem Physiol B Biochem Mol Biol , vol.142 , pp. 129-141
    • Lambert, L.A.1    Perri, H.2    Halbrooks, P.J.3    Mason, A.B.4
  • 14
    • 34249296343 scopus 로고    scopus 로고
    • Reptilian transferrins: evolution of disulphide bridges and conservation of iron-binding center
    • Ciuraszkiewicz J, Biczycki M, Maluta A, Martin S, Watorek W, et al. (2007) Reptilian transferrins: evolution of disulphide bridges and conservation of iron-binding center. Gene 396: 28-38.
    • (2007) Gene , vol.396 , pp. 28-38
    • Ciuraszkiewicz, J.1    Biczycki, M.2    Maluta, A.3    Martin, S.4    Watorek, W.5
  • 16
    • 0020092046 scopus 로고
    • The complete nucleotide sequence of the chicken ovotransferrin mRNA
    • Jeltsch JM, Chambon P, (1982) The complete nucleotide sequence of the chicken ovotransferrin mRNA. Eur J Biochem 122: 291-295.
    • (1982) Eur J Biochem , vol.122 , pp. 291-295
    • Jeltsch, J.M.1    Chambon, P.2
  • 18
    • 0027311327 scopus 로고
    • The cDNA sequence of horse transferrin
    • Carpenter MA, Broad TE, (1993) The cDNA sequence of horse transferrin. Biochim Biophys Acta 1173: 230-232.
    • (1993) Biochim Biophys Acta , vol.1173 , pp. 230-232
    • Carpenter, M.A.1    Broad, T.E.2
  • 19
    • 0023804867 scopus 로고
    • Nucleotide sequence of porcine liver transferrin
    • Baldwin GS, Weinstock J, (1988) Nucleotide sequence of porcine liver transferrin. Nucleic Acids Res 16: 8720.
    • (1988) Nucleic Acids Res , vol.16 , pp. 8720
    • Baldwin, G.S.1    Weinstock, J.2
  • 20
    • 0025695557 scopus 로고
    • Isolation and molecular cloning of transferrin from the tobacco hornworm, Manduca sexta. Sequence similarity to the vertebrate transferrins
    • Bartfeld NS, Law JH, (1990) Isolation and molecular cloning of transferrin from the tobacco hornworm, Manduca sexta. Sequence similarity to the vertebrate transferrins. J Biol Chem 265: 21684-21691.
    • (1990) J Biol Chem , vol.265 , pp. 21684-21691
    • Bartfeld, N.S.1    Law, J.H.2
  • 22
    • 0027639930 scopus 로고
    • Cloning and characterization of Atlantic salmon (Salmo salar) serum transferrin cDNA
    • Kvingedal AM, Rorvik KA, Alestrom P, (1993) Cloning and characterization of Atlantic salmon (Salmo salar) serum transferrin cDNA. Mol Mar Biol Biotechnol 2: 233-238.
    • (1993) Mol Mar Biol Biotechnol , vol.2 , pp. 233-238
    • Kvingedal, A.M.1    Rorvik, K.A.2    Alestrom, P.3
  • 23
    • 0000123372 scopus 로고
    • Cloning, nucleotide sequence analysis, and characterization of cDNA for medaka (Oryzias latipes) transferrin
    • Hirono I, Uchiyama T, Aoki T, (1995) Cloning, nucleotide sequence analysis, and characterization of cDNA for medaka (Oryzias latipes) transferrin. J Mar Biotechnol 2: 193-198.
    • (1995) J Mar Biotechnol , vol.2 , pp. 193-198
    • Hirono, I.1    Uchiyama, T.2    Aoki, T.3
  • 24
    • 0030237091 scopus 로고    scopus 로고
    • Structure of medaka transferrin gene and its 5′-flanking region
    • Mikawa N, Hirono I, Aoki T, (1996) Structure of medaka transferrin gene and its 5′-flanking region. Mol Mar Biol Biotechnol 5: 225-229.
    • (1996) Mol Mar Biol Biotechnol , vol.5 , pp. 225-229
    • Mikawa, N.1    Hirono, I.2    Aoki, T.3
  • 26
    • 21844494050 scopus 로고
    • Cloning and characterization of transferrin cDNA from coho salmon (Oncorhynchus kisutch)
    • Lee J, Tange N, Yamashita H, Hirono I, Aoki T, (1995) Cloning and characterization of transferrin cDNA from coho salmon (Oncorhynchus kisutch). Fish Pathology 30.
    • (1995) Fish Pathology , vol.30
    • Lee, J.1    Tange, N.2    Yamashita, H.3    Hirono, I.4    Aoki, T.5
  • 27
    • 0032423323 scopus 로고    scopus 로고
    • Molecular cloning and evolution of transferrin cDNAs in salmonids
    • Lee JY, Tada T, Hirono I, Aoki T, (1998) Molecular cloning and evolution of transferrin cDNAs in salmonids. Mol Mar Biol Biotechnol 7: 287-293.
    • (1998) Mol Mar Biol Biotechnol , vol.7 , pp. 287-293
    • Lee, J.Y.1    Tada, T.2    Hirono, I.3    Aoki, T.4
  • 28
    • 0031464296 scopus 로고    scopus 로고
    • Cloning and characterization of transferrin cDNA and rapid detection of transferrin gene polymorphism in rainbow trout (Oncorhynchus mykiss)
    • Tange N, Jong-Young L, Mikawa N, Hirono I, Aoki T, (1997) Cloning and characterization of transferrin cDNA and rapid detection of transferrin gene polymorphism in rainbow trout (Oncorhynchus mykiss). Mol Mar Biol Biotechnol 6: 351-356.
    • (1997) Mol Mar Biol Biotechnol , vol.6 , pp. 351-356
    • Tange, N.1    Jong-Young, L.2    Mikawa, N.3    Hirono, I.4    Aoki, T.5
  • 29
    • 0035057075 scopus 로고    scopus 로고
    • Molecular evolution of transferrin: evidence for positive selection in salmonids
    • Ford MJ, (2001) Molecular evolution of transferrin: evidence for positive selection in salmonids. Molecular biology and evolution 18: 639-647.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 639-647
    • Ford, M.J.1
  • 30
    • 0033150393 scopus 로고    scopus 로고
    • Natural selection promotes divergence of transferrin among salmonid species
    • Ford MJ, Thornton PJ, Park LK, (1999) Natural selection promotes divergence of transferrin among salmonid species. Molecular Ecology 8: 1055-1061.
    • (1999) Molecular Ecology , vol.8 , pp. 1055-1061
    • Ford, M.J.1    Thornton, P.J.2    Park, L.K.3
  • 31
    • 3042635183 scopus 로고    scopus 로고
    • Positive selection on multiple antique allelic lineages of transferrin in the polyploid Carassius auratus
    • Yang L, Gui JF, (2004) Positive selection on multiple antique allelic lineages of transferrin in the polyploid Carassius auratus. Molecular biology and evolution 21: 1264-1277.
    • (2004) Molecular Biology and Evolution , vol.21 , pp. 1264-1277
    • Yang, L.1    Gui, J.F.2
  • 32
    • 55349113551 scopus 로고    scopus 로고
    • Biology and breeding technology of Miichthys miiuy
    • Lou B, (2004) Biology and breeding technology of Miichthys miiuy. Chin J Mod Fish 6: 11-13.
    • (2004) Chin J Mod Fish , vol.6 , pp. 11-13
    • Lou, B.1
  • 33
    • 0002554370 scopus 로고
    • A review of the taxonomy and seroepizootiology of Vibrio anguillarum, with special reference to aquaculture in the Northwest of Spain
    • Toranzo AE, Barja JL, (1990) A review of the taxonomy and seroepizootiology of Vibrio anguillarum, with special reference to aquaculture in the Northwest of Spain. Diseases of aquatic organisms 9: 73-82.
    • (1990) Diseases of Aquatic Organisms , vol.9 , pp. 73-82
    • Toranzo, A.E.1    Barja, J.L.2
  • 34
    • 84995250223 scopus 로고
    • A survey of transferrins in 87 teleostean species
    • Jamieson A, (1990) A survey of transferrins in 87 teleostean species. Animal genetics 21: 295-301.
    • (1990) Animal Genetics , vol.21 , pp. 295-301
    • Jamieson, A.1
  • 35
    • 73249124822 scopus 로고    scopus 로고
    • Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus
    • Liu H, Takano T, Abernathy J, Wang S, Sha Z, et al. (2010) Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus. Fish Shellfish Immunol 28: 159-166.
    • (2010) Fish Shellfish Immunol , vol.28 , pp. 159-166
    • Liu, H.1    Takano, T.2    Abernathy, J.3    Wang, S.4    Sha, Z.5
  • 37
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 38
    • 0000909464 scopus 로고
    • Characterization of an invertebrate transferrin from the crab Cancer magister (Arthropoda)
    • Huebers HA, Huebers E, Finch CA, Martin AW, (1982) Characterization of an invertebrate transferrin from the crab Cancer magister (Arthropoda). J Comp Physiol 148: 101-109.
    • (1982) J Comp Physiol , vol.148 , pp. 101-109
    • Huebers, H.A.1    Huebers, E.2    Finch, C.A.3    Martin, A.W.4
  • 40
    • 0032954031 scopus 로고    scopus 로고
    • Identification of sequences in human transferrin that bind to the bacterial receptor protein, transferrin-binding protein B
    • Retzer MD, Yu RH, Schryvers AB, (1999) Identification of sequences in human transferrin that bind to the bacterial receptor protein, transferrin-binding protein B. Mol Microbiol 32: 111-121.
    • (1999) Mol Microbiol , vol.32 , pp. 111-121
    • Retzer, M.D.1    Yu, R.H.2    Schryvers, A.B.3
  • 41
    • 0024389662 scopus 로고
    • Structure of human lactoferrin: crystallo graphic structure analysis and refinement at 2.8 A° resolution
    • Anderson BF, Baker HM, Norris GE, Rice DW, Baker EN, (1989) Structure of human lactoferrin: crystallo graphic structure analysis and refinement at 2.8 A° resolution. J Mol Biol 209: 711-734.
    • (1989) J Mol Biol , vol.209 , pp. 711-734
    • Anderson, B.F.1    Baker, H.M.2    Norris, G.E.3    Rice, D.W.4    Baker, E.N.5
  • 42
    • 80052075391 scopus 로고    scopus 로고
    • Characterization of the major histocompatibility complex class II genes in miiuy croaker
    • Xu TJ, Sun YN, Shi G, Cheng YZ, Wang RX, (2011) Characterization of the major histocompatibility complex class II genes in miiuy croaker. PLoS ONE 6: e23823.
    • (2011) PLoS ONE , vol.6
    • Xu, T.J.1    Sun, Y.N.2    Shi, G.3    Cheng, Y.Z.4    Wang, R.X.5
  • 43
    • 50149094028 scopus 로고    scopus 로고
    • MHC polymorphism and disease resistance to vibrio anguillarum in 12 selective Japanese flounder (Paralichthys olivaceus) families
    • Xu TJ, Chen SL, Ji XS, Tian YS, (2008) MHC polymorphism and disease resistance to vibrio anguillarum in 12 selective Japanese flounder (Paralichthys olivaceus) families. Fish Shellfish Immunol 25: 213-221.
    • (2008) Fish Shellfish Immunol , vol.25 , pp. 213-221
    • Xu, T.J.1    Chen, S.L.2    Ji, X.S.3    Tian, Y.S.4
  • 44
    • 77957754187 scopus 로고    scopus 로고
    • Identification of immune genes of the miiuy croaker (Miichthys miiuy) by sequencing and bioinformatic analysis of ESTs
    • Xu TJ, Meng FX, Sun YN, Shi G, Wang RX, (2010) Identification of immune genes of the miiuy croaker (Miichthys miiuy) by sequencing and bioinformatic analysis of ESTs. Fish Shellfish Immunol 29: 1099-1105.
    • (2010) Fish Shellfish Immunol , vol.29 , pp. 1099-1105
    • Xu, T.J.1    Meng, F.X.2    Sun, Y.N.3    Shi, G.4    Wang, R.X.5
  • 45
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2-ΔΔCT Method
    • Livak KJ, Schmittgen TD, (2001) Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2-ΔΔCT Method. Methods 25: 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 46
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen H, Engelbrecht J, Brunak S, von Heijne G, (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 10: 1-6.
    • (1997) Protein Eng , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    von Heijne, G.4
  • 47
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 48
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 49
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: phylogenetic model averaging
    • Posada D, (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 50
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 51
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: an application to display phylogenetic trees on personal computers
    • Page RD, (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.1
  • 52
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z, Nielsen R, Goldman N, Pedersen AM, (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 53
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z, (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.