Strand-specific RNA-seq applied to malaria samples

Methods in Molecular Biology

Volumn 883, Issue , 2012, Pages 59-73

  Ponts, Nadia ^a   Chung, Duk Won D ^a   Le Roch, Karine G ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

High throughput sequencing; Malaria; Plasmodium falciparum; Splicing variant discovery; Strand specific RNA seq; Transcript discovery

Indexed keywords

RNA; ADENOSINE; BUFFER; COMPLEMENTARY DNA; DEOXYRIBONUCLEASE; MESSENGER RNA; POLYADENOSINE; POLYMER; PROTOZOAL RNA;

ARTICLE; MALARIA; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; RNA ANALYSIS; RNA EXTRACTION; RNA SEQUENCE; CHEMISTRY; DNA CLEAVAGE; GENE LIBRARY; GENETICS; HIGH THROUGHPUT SEQUENCING; ISOLATION AND PURIFICATION; METHODOLOGY; SEQUENCE ANALYSIS; SYNTHESIS;

ADENOSINE; BUFFERS; DEOXYRIBONUCLEASES; DNA CLEAVAGE; DNA, COMPLEMENTARY; GENE LIBRARY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; PLASMODIUM FALCIPARUM; POLYMERS; RNA; RNA, MESSENGER; RNA, PROTOZOAN; SEQUENCE ANALYSIS, RNA;

EID: 84865683734     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-839-9_4     Document Type: Article

References (4)

1. Le Roch KG et al (2003) Discovery of gene function by expression profi ling of the malaria parasite life cycle. Science 301(5639):1503-1508
2. Bozdech Z et al (2003) The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum PLoS Biol 1(1):E5
3. Otto TD et al (2010) New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq. Mol Microbiol 76(1):12-24
4. Katherine Sorber MT, Dimon JLDeRisi (2011) RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts. Nucleic Acids Res 39(9): 3820-3835