Large-scale characterization of promoters from grapevine (Vitis spp.) using quantitative anthocyanin and GUS assay systems

Plant Science

Volumn 196, Issue , 2012, Pages 132-142

  Li, Zhijian T ^a   Kim, Kyung Hee ^a   Jasinski, Jonathon R ^a   Creech, Matthew R ^a   Gray, Dennis J ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

Anthocyanin; Color histogram; Promoter activity; Quantitative reporter marker; Ubiquitin gene promoter; Vitis vinifera

Indexed keywords

ANTHOCYANIN; BETA GLUCURONIDASE; UBIQUITIN; VEGETABLE PROTEIN;

ARTICLE; CLASSIFICATION; GENE EXPRESSION REGULATION; GENETIC ENGINEERING; GENETICS; METABOLISM; METHODOLOGY; PHYLOGENY; PROMOTER REGION; TOBACCO; TRANSGENE; TRANSGENIC PLANT; VITIS;

ANTHOCYANINS; GENE EXPRESSION REGULATION, PLANT; GENETIC ENGINEERING; GLUCURONIDASE; PHYLOGENY; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS, GENETIC; TOBACCO; TRANSGENES; UBIQUITIN; VITIS;

NICOTIANA TABACUM; VITACEAE; VITIS; VITIS VINIFERA;

EID: 84865632023     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2012.08.009     Document Type: Article

References (52)

1. Konig A. A framework for designing transgenic crops-science, safety and citizen's concerns. Nat. Biotechnol. 2003, 21:1274-1279.
2. Lusk J.L., Rozan A. Consumer acceptance of ingenic foods. Biotechnol. J. 2006, 1:1433-1434.
3. Schouten H., Krens F.A., Jacobsen E. Cisgenic plants are similar to traditionally bred plants. EMBO Rep. 2006, 7:750-753.
4. Rommens C.M., Haring M.A., Swords K., Davies H.V., Belknap W.R. The intragenic approach as a new extension to traditional plant breeding. Trends Plant Sci. 2007, 12:397-403.
5. Gray D.J., Jayasankar S., Li Z. Vitaceae (Grape Vitis spp.). Biotechnology of Fruit and Nut Crops, Biotechnology in Agriculture Series, No. 29 2005, 672-706. CAB International Wallingford, UK, (Chapter 22). R.E. Litz (Ed.).
6. Li Z.T., Dhekney S.A., Dutt M., Gray D.J. An improved protocol for Agrobacterium-mediated transformation of grapevine (Vitis vinifera L.). Plant Cell Tissue Organ Cult. 2008, 93:311-321.
7. Jaillon O., Aury J.M., Noel B., et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449:463-467.
8. Dhekney S.A., Li Z.T., Compton M.E., Gray D.J. Optimizing initiation and maintenance of Vitis embryogenic cultures. HortScience 2009, 44:1400-1406.
9. Guilfoyle T.J. The structure of plant promoters. Genet. Eng.: Princ. Methods 1997, 19:15-48.
10. Potenza C., Aleman L., Sengupta-Gopalan C. Targeting transgene expression in research, agricultural, and environmental applications: promoters used in plant transformation. In Vitro Cell. Dev. Biol. - Plant 2004, 40:1-22.
11. Scorza R., Cordts J.M., Gray D.J., Gonsalves D., Emershad R.L., Ramming D.W. Producing transgenic 'Thompson Seedless' grape (Vitis vinifera L.) plants. J. Am. Soc. Hortic. Sci. 1996, 121:616-619.
12. Yamamoto T., Iketani H., Ieki H., Nishizawa Y., Notsuka K., Hibi T., Hayashi T., Matsuta N. Transgenic grapevine plants expressing a rice chitinase with enhanced resistance to fungal pathogens. Plant Cell Rep. 2000, 19:639-646.
13. Li Z., Jayasankar S., Gray D.J. Expression of a bifunctional green fluorescent protein (GFP) fusion marker under the control of three constitutive promoters and enhanced derivatives in transgenic grape (Vitis vinifera). Plant Sci. 2001, 160:877-887.
14. Li Z.T., Jayasankar S., Gray D.J. Bi-directional duplex promoters with duplicated enhancers significantly increase transgene expression in grape and tobacco. Transgenic Res. 2004, 13:143-154.
15. Dhekney S., Li Z.T., Gray D.J. Grapevine engineered to express cisgenic Vitis vinifera thaumatin-like protein exhibit fungal disease resistance. In Vitro Cell. Dev. Biol. - Plant 2011, 47:458-466.
16. Li Z.T., Dhekney S.A., Gray D.J. Use of the VvMybA1 gene for non-destructive quantification of promoter activity via color histogram analysis in grapevine (Vitis vinifera) and tobacco. Transgenic Res. 2011, 20:1087-1097.
17. Burrow M.D., Chlan C.A., Sen P., Murai N. High frequency generation of transgenic tobacco plants after modified leaf disk cocultivation with Agrobacterium tumefaciens. Plant Mol. Biol. Rep. 1990, 8:124-139.
18. Li Z.T., Dhekney S.A., Gray D.J. PR-1 gene family of grapevine: a uniquely duplicated PR-1 gene from a Vitis interspecific hybrid confers high level resistance to bacterial disease in transgenic tobacco. Plant Cell Rep. 2011, 30:1-11.
19. Li Z.T., Gray D.J. Isolation by improved thermal asymmetric interlaced PCR and characterization of a seed-specific 2S albumin gene and its promoter from grape (Vitis vinifera L.). Genome 2005, 48:312-320.
20. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
21. Hedges S.B. The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Mol. Biol. Evol. 1992, 9:366-369.
22. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
23. Lodhi M.A., Ye G.N., Weeden N.F., Reisch B.J. A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species. Plant Mol. Biol. Rep. 1994, 12:6-13.
24. Jefferson R.A. Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol. Biol. Rep. 1987, 5:387-405.
25. Higo K., Ugawa Y., Iwamoto M., Korenaga T. Plant cis-acting regulatory DNA elments (PLACE) database: 1999. Nucleic Acids Res. 1999, 27:297-300.
26. Wang J., Jiang J., Oard J.H. Structure, expression and promoter activity of two polyubiquitin genes from rice (Oryza sativa L.). Plant Sci. 2000, 156:201-211.
27. Verries C., Pradal M., Chatelet P., Torregrosa L., Tesniere C. Isolation and analysis of the promoter of VvAdh2, a grapevine (Vitis vinifera L.) ripening-related gene. Plant Sci. 2004, 167:1067-1074.
28. Schubert R., Fischer R., Hain R., Schreier P.H., Bahnweg G., Ernst D., Sandermann H. An ozone-responsive region of the grapevine resveratrol synthase promoter differs from the basal pathogen-responsive sequence. Plant Mol. Biol. 1997, 34:417-426.
29. Grimmig B., Gonzalez-Perez M.N., Welzl G., Penuelas J., Shubert R., Hain R., Heidenreich B., Betz C., Langebartels C., Ernst D., Sandermann H. Enthylene- and ozone-induced regulation of a grapevine resveratrol synthase gene: different responsive promoter regions. Plant Physiol. Biochem. 2003, 40:865-870.
30. Nei M., Rogozin I.B., Piontkivska H. Purifying selection and birth-and-death evolution in the ubiquitin gene family. Proc. Nat. Acad. Sci. U.S.A. 2000, 97:10866-10871.
31. Nei M., Gu X., Sitnikova T. Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proc. Nat. Acad. Sci. U.S.A. 1997, 94:7799-7806.
32. Nei M., Rooney A.P. Concerted and birth-and-death evolution of multigene family. Annu. Rev. Genet. 2005, 39:121-152.
33. Hertig C., Rebmann G., Bull J., Mauch F., Dudler R. Sequence and tissue-specific expression of a putative peroxidase gene from wheat (Triticum aestivum L.). Plant Mol. Biol. 1991, 16:171-174.
34. 2 promoter. Transgenic Res. 1995, 4:388-396.
35. Xiao K., Liu J., Dewbre G., Harrison M., Wang Z.Y. Isolation and characterization of root-specific phosphate transport promoters from Medicago truncatula. Plant Biol. 2006, 8:439-449.
36. Norris S.R., Meyer S.E., Callis J. The intron of Arabidopsis thaliana polyubiquitin genes is conserved in location and is a quantitative determinant of chimeric gene expression. Plant Mol. Biol. 1993, 21:895-906.
37. Sivamani E., Qu R. Expression enhancement of a rice polyubiquitin gene promoter. Plant Mol. Biol. 2006, 60:225-239.
38. Nott A., Le Hir H., Moore M.J. Splicing enhances translation in mammalian cells: an additional function of the exon junction complex. Genes Dev. 2004, 18:210-222.
39. Callis J., Raasch J.A., Vierstra R.D. Ubiquitin extension proteins of Arabidopsis thaliana structure, localization, and expression of their promoters in transgenic tobacco. J. Biol. Chem. 1990, 265:12486-12493.
40. Garbarino J.E., Belknap W.R. Isolation of a ubiquitin-ribosomal protein gene (Ubi3) from potato and expression of its promoter in transgenic plants. Plant Mol. Biol. 1994, 24:119-127.
41. Joung Y.H., Kamo K. Expression of a polyubiquitin promoter isolated form Gladiolus. Plant Cell Rep. 2006, 25:1081-1088.
42. Lu J., Sivamani E., Li X. Activity of the 5' regulatory regions of the rice polyubiquitin rubi3 gene in transgenic rice plants as analyzed by both GUS and GFP reporter genes. Plant Cell Rep. 2008, 27:1587-1600.
43. Rooke L., Byrne D., Salgueiro S. Marker gene expression driven by the maize ubiquitin promoter in transgenic wheat. Ann. Appl. Biol. 2000, 136:167-172.
44. Liu D., Oard S.V., Oard J.H. High transgene expression levels in sugarcane (Saccharum officinarum L.) driven by the rice ubiquitin promoter RUBQ2. Plant Sci. 2003, 165:743-750.
45. Xu Y., Chang P.L., Liu D., Narasimhan M.L., Raghothama K.G., Hasegawa P.M., Bressan R.A. Plant defense genes are synergistically induced by ethylene and methyl jasmonate. Plant Cell 1994, 6:1077-1085.
46. Santamaria M., Thomson C.J., Read N.D., Loake G.J. The promoter of a basic PR1-like gene AtPRB1, from Arabidopsis established an organ-specific expression pattern and responsiveness to ethylene and methyl jasmonate. Plant Mol. Biol. 2001, 47:641-652.
47. Hong J.K., Lee S.C., Hwang B.K. Activation of pepper basic PR-1 gene promoter during defense signaling to pathogen, abiotic and environmental stresses. Gene 2005, 356:169-180.
48. Ohshima M., Itoh H., Matsuoka M., Murakami T., Ohashi Y. Analysis of stress-induced or salicylic acid-induced expression of the pathogenesis-related 1a protein gene in transgenic tobacco. Plant Cell 1990, 2:95-106.
49. Eyal Y., Meller Y., Lev-Yadun S., Fluhr R. A basic-type PR-1 promoter directs ethylene responsiveness, vascular and abscission zone-specific expression. Plant J. 1993, 4:225-234.
50. Meier I., Hahlbrock K., Somssich I.E. Elicitor-inducible and constitutive in vivo DNA footprints indicate novel cis-acting elements in the promoter of a parsley gene encoding pathogenesis-related protein 1. Plant Cell 1991, 3:309-315.
51. Vitha S., Benes K., Michalova M., Ongrej M. Quantitative, β-glucuronidase assay in transgenic plants. Biol. Plant. 1993, 35:151-155.
52. Cote C., Rutledge R.G. An improved MUG fluorescent assay for the determination of GUS activity within transgenic tissue of woody plants. Plant Cell Rep. 2003, 21:619-624.