A non-targeted metabolomics approach to quantifying differences in root storage between fast- and slow-growing plants

New Phytologist

Volumn 196, Issue 1, 2012, Pages 200-211

  Atkinson, Rebecca R L ^a   Burrell, Mike M ^a   Osborne, Colin P ^a   Rose, Karen E ^a   Rees, Mark ^a  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

Author keywords

Allocation strategy; Fast slow continuum; Metabolomics; Root physiology; Trade off

Indexed keywords

IODINE;

AMINO ACID; CARBOHYDRATE; DEFOLIATION; GROWTH RATE; LIFE HISTORY THEORY; LIFE HISTORY TRAIT; METABOLISM; METABOLITE; MORTALITY; PHYSIOLOGY; PLANT; RESOURCE ALLOCATION; ROOT SYSTEM; SURVIVAL;

ANALYSIS OF VARIANCE; ARTICLE; CARBOHYDRATE METABOLISM; CYTOLOGY; GROWTH, DEVELOPMENT AND AGING; METABOLISM; METABOLOMICS; METHODOLOGY; PLANT DEVELOPMENT; PLANT ROOT; REGRESSION ANALYSIS; SPECIES DIFFERENCE; STAINING;

ANALYSIS OF VARIANCE; CARBOHYDRATE METABOLISM; IODINE; LEAST-SQUARES ANALYSIS; METABOLOMICS; PLANT DEVELOPMENT; PLANT ROOTS; SPECIES SPECIFICITY; STAINING AND LABELING;

EID: 84865552588     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2012.04274.x     Document Type: Article

References (60)

1. Ardent DA. 1997. Adaptive intrinsic growth rates: an integration across taxa. Quarterly Review of Biology 72: 149-177.
2. Beeson RC, Proebsting WM. 1988. Carbon metabolism in scions of Colorado blue spruce. II. Carbon storage compounds. Journal of the American Society for Horticultural Science 113: 800-805.
3. Bell TL, Pate JS, Dixon KW. 1996. Relationships between fire response, morphology, root anatomy and starch distribution in South-West Australian Epacridaceae. Annals of Botany 77: 357-364.
4. Bloom AJ, Chapin FS, Mooney HA. 1985. Resource limitation in plants - an economic analogy. Annual Review of Ecology and Systematics 16: 363-392.
5. Bundy JG, Davey MP, Viant MR. 2009. Environmental metabolomics: a critical review and future perspectives. Metabolomics 5: 3-21.
6. Chapin FS. 1980. The mineral nutrition of wild plants. Annual Review of Ecology and Systematics 11: 233-260.
7. Chapin FS, Schulze ED, Mooney HA. 1990. The ecology and economics of storage in plants. Annual Review of Ecology and Systematics 21: 423-447.
8. Chapin FS, Shaver GR, Kedrowski RA. 1986. Environmental controls over carbon, nitrogen and phosphorus in Eriophorum vaginatum in Alaskan tussock tundra. Journal of Ecology 74: 167-195.
9. Clarkson DT. 1985. Factors affecting mineral nutrient acquisition by plants. Annual Review of Plant Physiolology 36: 77-115.
10. Davey MP, Burrell MM, Woodward FI, Quick WP. 2008. Population-specific metabolic phenotypes of Arabidopsis lyrata ssp petraea. New Phytologist 177: 380-388.
11. Efron B, Gong G. 1983. A leisurely look at the bootstrap, the jack-knife and cross-validation. American Statistician 37: 36-48.
12. Eriksson L, Johansson E, Kettaneh-Wold N, Trygg J, Wikström C, Wold S. 2006. Multi- and megavariate data analysis - part II: advanced applications and method extensions. Umeå, Sweden: MKS Umetrics.
13. ® models. Journal of Chemometrics 22: 594-600.
14. Gaucher C, Gougeon S, Mauffette Y, Messier C. 2005. Seasonal variation in biomass and carbohydrate partitioning of understory sugar maple (Acer saccharum) and yellow birch (Betula alleghaniensis) seedlings. Tree Physiology 25: 93-100.
15. Grime JP. 1977. Evidence for the existence of three primary strategies in plants and its relevance to ecological and evolutionary theory. American Naturalist 111: 1169-1194.
16. Grime JP, Hunt R. 1975. Relative growth rate - its range and adaptive significance in a local flora. Journal of Ecology 63: 393-422.
17. Hare PD, Cress WA. 1997. Metabolic implications of stress-induced proline accumulation in plants. Plant Growth Regulation 21: 79-102.
18. Kandler O, Hopf H. 1982. Oligosaccharides based on sucrose (sucrosyl oligosaccharides). Loewus FA, Tanner W, eds. Encyclopedia of plant physiology: plant carbohydrates I, intracellular carbohydrates (new series). Berlin, Germany: Springer-Verlag, 348-383.
19. Keller F, Matile PH. 1985. The role of the vacuole in storage and mobilization of stachyose in tubers of Stachys-sieboldii. Journal of Plant Physiology 119: 369-380.
20. Keller F, Pharr DM. 1996. Metabolism of carbohydrates in sinks and sources: galactosyl-sucrose oligosaccharides. Zamski E, Schaffer AA, eds. Photoassimilate distribution in plants and crops: source-sink relationships. New York, NY, USA: Marcel Dekker, 157-183.
21. Koons DN, Metcalf CJE, Tuljapurkar S. 2008. Evolution of delayed reproduction in uncertain environments: a life-history perspective. American Naturalist 172: 797-805.
22. Kozlowski TT. 1992. Carbohydrate sources and sinks in woody plants. Botanical Review 58: 107-222.
23. Lambers H, Dijkstra P. 1987. A physiological analysis of genotypic variation in relative growth rate: can growth rate confer ecological advantage? van Andel J, Bakker JP, Snaydon RW, eds, Disturbance in grasslands. Dordrecht, the Netherlands: Junk, 237-252.
24. Madsen T, Shine R. 2000. Silver spoons and snake body sizes: prey availability early in life influences long-term growth rates of free-ranging pythons. Journal of Animal Ecology 69: 952-958.
25. Marquis RJ, Newell EA, Villegas AC. 1997. Non-structural carbohydrate accumulation and use in an under story rain-forest shrub and relevance for the impact of leaf herbivory. Functional Ecology 11: 636-643.
26. McLaren IA. 1966. Adaptive significance of large size and long life of chaetognath Sagitta elegans in the Arctic. Ecology 47: 852-856.
27. Metcalf CJE, Koons DN. 2007. Environmental uncertainty, autocorrelation and the evolution of survival. Proceedings of the Royal Society of London Series B Biological Sciences 274: 2153-2160.
28. Metcalf CJE, Rees M, Alexander JM, Rose KE. 2006. Growth-survival trade-offs and allometries in rosette-forming perennials. Functional Ecology 20: 217-225.
29. Mooney HA, Fichtner K, Schulze ED. 1995. Growth, photosynthesis and storage of carbohydrates and nitrogen in Phaseolus lunatus in relation to resource availability. Oecologia 104: 17-23.
30. Myers JA, Kitajima K. 2007. Carbohydrate storage enhances seedling shade and stress tolerance in a neotropical forest. Journal of Ecology 95: 383-395.
31. Noda I. 2008. Scaling techniques to enhance two-dimensional correlation spectra. Journal of Molecular Structure 883-884: 216-227.
32. Ohlson M, Nordin A, Näsholm T. 1995. Accumulation of amino acids in forest plants in relation to ecological amplitude and nitrogen supply. Functional Ecology 9: 596-605.
33. Okumoto S, Pilot G. 2011. Amino acid transport in plants: a missing link in nitrogen cycling. Molecular Plant 4: 453-463.
34. Parsons RF. 1968. The significance of growth-rate comparisons for plant ecology. American Naturalist 102: 595-597.
35. Pate JS, Froend RH, Bowen BJ, Hansen A, Kuo J. 1990. Seedling growth and storage characteristics of seeder and resprouter species of Mediterranean-type ecosystems of S. W. Australia. Annals of Botany 65: 585-601.
36. Paul-Victor C, Zust T, Rees M. 2010. A new method for measuring relative growth rate can uncover the costs of defensive compounds in Arabidopsis thaliana. New Phytologist 187: 1102-1111.
37. Piironen V, Lindsay DG, Miettinen TA, Toivo J, Lampi AM. 2000. Plant sterols: biosynthesis, biological function and their importance to human nutrition. Journal of the Science of Food and Agriculture 80: 939-966.
38. Poorter H. 1989. Interspecific variation in relative growth rate: on ecological causes and physiological consequences. Lambers H, Freijsen N, Poorter H, Hirose T, Van der Werf A. eds. Causes and consequences of variation in growth rate and productivity of higher plants. The Hague, the Netherlands: SPB Academic Publishing, 45-68.
39. Poorter H, Bergkotte M. 1992. Chemical composition of 24 wild species differing in relative growth rate. Plant, Cell & Environment 15: 221-229.
40. Poorter H, Remkes C. 1990. Leaf area ratio and net assimilation rate of 24 wild species differing in relative growth rate. Oecologia 83: 553-559.
41. Poorter H, Remkes C, Lambers H. 1990. Carbon and nitrogen economy of 24 wild species differing in relative growth rate. Plant Physiology 94: 621-627.
42. Poorter L, Kitajima K. 2007. Carbohydrate storage and light requirements of tropical moist and dry forest tree species. Ecology 88: 1000-1011.
43. R Development Core Team. 2009. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. ISBN 3-900051-07-0, URL http://www.R-project.org.
44. Radwanski ER, Last RL. 1995. Tryptophan biosynthesis and metabolism: biochemical and molecular genetics. Plant Cell 7: 921-934.
45. Rees M. 1994. Delayed germination of seeds: a look at the effects of adult longevity, the timing of reproduction, and population age/stage structure. American Naturalist 144: 43-64.
46. Ricklefs RE, Wikelski M. 2002. The physiology/life-history nexus. Trends in Ecology & Evolution 17: 462-468.
47. Roessner U, Wagner C, Kopka J, Trethewey RN, Willmitzer L. 2000. Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant Journal 23: 131-142.
48. Rose KE, Atkinson RL, Turnbull LA, Rees M. 2009. The costs and benefits of fast living. Ecology Letters 12: 1379-1384.
49. Rose KE, Rees M, Grubb PJ. 2002. Evolution in the real world: stochastic variation and the determinants of fitness in Carlina vulgaris. Evolution 56: 1416-1430.
50. Rozan P, Kuo YH, Lambein F. 2001. Amino acids in seeds and seedlings of the genus Lens. Phytochemistry 58: 281-289.
51. Sagisaka S. 1987. Amino acid pools in herbaceous plants at the wintering stage and at the beginning of growth. Plant and Cell Physiology 28: 171-178.
52. Sagisaka S, Araki T. 1983. Amino-acid pools in perennial plants at the wintering stage and at the beginning of growth. Plant and Cell Physiology 24: 479-494.
53. Steinlein T, Heilmeier H, Schulze ED. 1993. Nitrogen and carbohydrate storage in biennials originating from habitats of different resource availability. Oecologia 93: 374-382.
54. Stewart GR, Lee JA. 1974. The role of proline accumulation in halophytes. Planta 120: 279-289.
55. Trygg J, Holmes E, Lundstedt T. 2007. Chemometrics in metabonomics. Journal of Proteome Research 6: 469-479.
56. Turnbull LA, Paul-Victor C, Schmid B, Purves DW. 2008. Growth rates, seed size and physiology: do small-seeded species really grow faster. Ecology 89: 1352-1363.
57. Van Der Meijden E, De Boer NJ, Van Der Veen-Van Wijk CAM. 2000. Pattern of storage and regrowth in ragwort. Evolutionary Ecology 14: 439-455.
58. Venable DL, Brown JS. 1988. The selective interactions of dispersal, dormancy, and seed size as adaptations for reducing risk in variable environments. American Naturalist 131: 360-384.
59. Wanner LA, Junttila O. 1999. Cold-induced freezing tolerance in Arabidopsis. Plant Physiology 120: 391-399.
60. Zrust J. 1994. Response of potato plants to drought stress by increased proline level in tubers. Rostlinna Vyroba 40: 711-720.