Phylogenetic analysis of rubella virus strains during an outbreak in São Paulo, 2007-2008

Journal of Medical Virology

Volumn 84, Issue 10, 2012, Pages 1666-1671

  Figueiredo, C A ^a   Oliveira, M I ^a   Curti, S P ^a   Afonso, A M S ^a   Frugi Yu, A L ^b   Gualberto, F ^c   Durigon, E L ^d  

^a INSTITUTO ADOLFO LUTZ   (Brazil)

^b Centro de Vigilancia Epidemiologica   (Brazil)

^c Instituto Emilio Ribas de Doenças Infecciosas   (Brazil)

^d UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

Congenital rubella syndrome; Genotype; RT PCR; Virus isolation

Indexed keywords

VIRUS RNA;

ADOLESCENT; ADULT; ARTICLE; BRAZIL; CELL CULTURE; CHILD; CLINICAL ASSESSMENT TOOL; CONTROLLED STUDY; EPIDEMIC; FEMALE; GENOTYPE; HUMAN; HUMAN CELL; HUMAN TISSUE; MALE; MONITORING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RUBELLA VIRUS; SAMPLE; TOGAVIRUS INFECTION; VIRUS ISOLATION; VIRUS STRAIN;

ADOLESCENT; ADULT; BRAZIL; CHILD, PRESCHOOL; CLUSTER ANALYSIS; FEMALE; GENOTYPE; HUMANS; INFANT, NEWBORN; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; RUBELLA; RUBELLA VIRUS; SEQUENCE ANALYSIS, DNA; VIRUS CULTIVATION; YOUNG ADULT;

RUBELLA; RUBELLA VIRUS;

EID: 84865540811     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23382     Document Type: Article

References (28)

1. Abernathy ES, Hübschen JM, Muller CP, Jin L, Brown D, Komase K, Mori Y, Xu W, Zhu Z, Siqueira MM, Shulga S, Tikhonova N, Pattamadilok S, Incomserb P, Smit SB, Akoua-Koffi C, Bwogi J, Lim WW, Woo GK, Triki H, Jee Y, Mulders MN, de Filippis AM, Ahmed H, Ramamurty N, Featherstone D, Icenogle JP. 2011. Status of global virologic surveillance for rubella viruses. J Infect Dis 204:S524-S532.
2. Andrade JQ, Budunki V, Curti SP, Figueiredo CA, Oliveira MI, Zugaib M. 2006. Rubella in pregnancy: Intrauterine transmission and perinatal outcome during a Brazilian epidemic. J Clin Virol 35:285-291.
3. Andrade JQ, Figueiredo CA, Oliveira MI, Carvalho MHB, Schultz R, Zugaib M. 2011. Isolation and genotyping of rubella virus from a case of congenital infection in Brazil. J Med Virol 83:2048-2050.
4. Best JM. 2007. Rubella. Semin Fetal Neonatal Med 12:182-192.
5. Bosma TJ, Corbett KM, O'Shea S, Banatvala JE, Best JM. 1995. PCR for detection of rubella virus RNA in clinical samples. J Clin Microbiol 331:75-79.
6. Caidi H, Abernathy ES, Benjouad A, Smit S, Bwogi J, Nanyunja M, El Aouad R, Icenogle J. 2008. Phylogenetic analysis of rubella viruses found in Morocco, Uganda, Cote d'Ivoire and South Africa from 2001 to 2007. J Clin Virol 42:86-90.
7. CVE-Centro de Vigilância Epidemiológica. 2011. Available from: http://www.cve.saude.sp.gov.br/htm/Cve_dex.htm
8. D'Agaro P, Dal Molin G, Zamparo E, Rossi T, Micuzzo M, Busetti M, Santon D, Campello C. 2010. Epidemiological and molecular assessment of a rubella outbreak in North-Eastern Italy. J Med Virol 82:1976-1982.
9. Figueiredo CA, Klautau GB, Afonso AMS, et al. 2008. Isolation and genotype analysis of Rubella virus from a case of Guillain-Barré syndrome. J Clin Virol 43:343-345.
10. Figueiredo CA, de Oliveira MI, Afonso AMS, Curti SP. 2009. Growth of rubella virus into SIRC (rabbit cornea cell line) using various culture media. Rev Inst Adolfo Lutz 68:145-149.
11. Figueiredo CA, Cordovani NT, Castrignano SB, Alves VA, Kanamura CT, Oliveira MI, Fernandes FM, Klautau GB, Durigon EL. 2010. Acute liver failure associated with rubella virus in a child. Pediatr Infect Dis J 29:573-574.
12. Figueiredo CA, Oliveira MI, Afonso AMS, Curti SP, Durigon EL. 2011. Rubella encephalitis in a young adult male: Isolation and genotype analysis. Infection 39:73-75.
13. Frey TK, Abernathy ES. 1993. Identification of strain-specific nucleotide sequences in the RA 27/3 rubella virus vaccine. J Infect Dis 168:854-864.
14. Gallegos D, Olea A, Sotomayor V, González C, Muñoz JC, Ramos M, Espinoza MC, et al. 2011. Rubella outbreaks following virus importations: The experience of Chile. J Infect Dis 204:S669-S674.
15. Hobman T, Chantler J. 2007. Rubella virus. In: Knipe DM, Howley PM, editors. Fields virology, Vol. 1. Philadelphia: Lippincott Williams & Wilkins, pp 1069-1100.
16. Icenogle JP, Siqueira MM, Abernathy ES, Lemos XR, Fasce RA, Torres G, Reef SE. 2011. Virologic surveillance for wild-type rubella viruses in the Americas. J Infect Dis 204:S647-S651.
17. Jin L, Thomas B. 2007. Application of molecular and serological assays to case based investigations of rubella and congenital rubella syndrome. J Med Virol 79:1017-1024.
18. Massad E, Azevedo-Neto RS, Burattini MN, Zanetta DM, Coutinho FA. 1995. Assessing the efficacy of a mixed vaccination strategy against rubella in São Paulo, Brazil. Int J Epidemiol 24:842-850.
19. Ministério da Saúde Brazil. 2008. Secretaria de vigilância em saúde departamento de vigilância epidemiológica, Surtos de rubéola no Brasil, atualização. Available from: http://www.portal.saude.gov.br/portal/arquivos/pdf/nota rubeola 0801.pdf
20. Novo A, Huebschen JM, Muller CP, Tesanovic M, Bojanic J. 2009. Ongoing rubella outbreak in Bosnia and Herzegovina, March-July 2009-Preliminary report. Euro Surveill 14:19343.
21. Rajasundari TA, Sundaresan P, Vijayalakshmi P, Brown DW, Jin L. 2008. Laboratory confirmation of congenital rubella syndrome in infants: An eye hospital based investigation. J Med Virol 80:536-546.
22. Reef SE, Frey TK, Theall K, Abernathy E, Burnett CL, Icenogle J, McCauley MM, Wharton M. 2002. The changing epidemiology of rubella in the 1990s: On the verge of elimination and new challenges for control and prevention. JAMA 287:464-472.
23. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality tools. Nucleic Acids Res 24:4876-4882.
24. Valinotto LE, Viegas M, Acevedo ME, Barrero PR, Mistchenko AS. 2009. Phylogenetic analysis of rubella viruses isolated in 2008 outbreak in Argentina. J Clin Virol 46:286-289.
25. Vauloup-Fellous C, Hübschen JM, Abernathy ES, Icenogle J, Gaidot N, Dubreuil P, Parent-du-Châtelet I, Grangeot-Keros L, Muller CP. 2010. Phylogenetic analysis of rubella viruses involved in congenital rubella infections in France between 1995 and 2009. J Clin Microbiol 48:2530-2535.
26. WHO. 2005. Standardization of the nomenclature for genetic characteristics of wild-type rubella viruses. Wkly Epidemiol Rec 80:126-132.
27. WHO. 2007. Update of standard nomenclature for wild-type rubella viruses. Wkly Epidemiol Rec 82:216-222.
28. Zhu Z, Abernathy E, Cui A, Zhang Y, Zhou S, Zhang Z, Wang C, Wang T, Ling H, Zhao C, et al. 2010. Rubella virus genotypes in the People's Republic of China between 1979 and 2007: A shift in endemic viruses during the 2001 Rubella Epidemic. J Clin Microbiol 48:1775-1781.