메뉴 건너뛰기




Volumn 513, Issue , 2012, Pages 233-250

Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq

Author keywords

Chromatin; Immunoprecipitation; MNase; Nucleosome; Sequencing

Indexed keywords

ADENOSINE; ANTIBODY; DNA POLYMERASE; HISTONE H3; MICROCOCCAL NUCLEASE;

EID: 84865511446     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-391938-0.00010-0     Document Type: Chapter
Times cited : (49)

References (15)
  • 1
    • 34047111213 scopus 로고    scopus 로고
    • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
    • I. Albert, T.N. Mavrich, L.P. Tomsho, J. Qi, S.J. Zanton, and S.C. Schuster Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome Nature 446 2007 572 576
    • (2007) Nature , vol.446 , pp. 572-576
    • Albert, I.1    Mavrich, T.N.2    Tomsho, L.P.3    Qi, J.4    Zanton, S.J.5    Schuster, S.C.6
  • 2
    • 0034999881 scopus 로고    scopus 로고
    • Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites
    • J.D. Anderson, and J. Widom Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites Molecular and Cellular Biology 21 2001 3830 3839
    • (2001) Molecular and Cellular Biology , vol.21 , pp. 3830-3839
    • Anderson, J.D.1    Widom, J.2
  • 3
    • 33746793264 scopus 로고    scopus 로고
    • Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure
    • Y. Bao, C.L. White, and K. Luger Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure Journal of Molecular Biology 361 2006 617 624
    • (2006) Journal of Molecular Biology , vol.361 , pp. 617-624
    • Bao, Y.1    White, C.L.2    Luger, K.3
  • 4
    • 0031079897 scopus 로고    scopus 로고
    • Analysis of in vivo nucleosome positions by determination of nucleosome-linker boundaries in crosslinked chromatin
    • G. Fragoso, and G.L. Hager Analysis of in vivo nucleosome positions by determination of nucleosome-linker boundaries in crosslinked chromatin Methods 11 1997 246 252
    • (1997) Methods , vol.11 , pp. 246-252
    • Fragoso, G.1    Hager, G.L.2
  • 5
    • 80053140931 scopus 로고    scopus 로고
    • A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization
    • T. Gkikopoulos, P. Schofield, V. Singh, M. Pinskaya, J. Mellor, and M. Smolle A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization Science 333 2011 1758 1760
    • (2011) Science , vol.333 , pp. 1758-1760
    • Gkikopoulos, T.1    Schofield, P.2    Singh, V.3    Pinskaya, M.4    Mellor, J.5    Smolle, M.6
  • 6
    • 65249164132 scopus 로고    scopus 로고
    • Mechanisms that specify promoter nucleosome location and identity
    • P.D. Hartley, and H.D. Madhani Mechanisms that specify promoter nucleosome location and identity Cell 137 2009 445 458
    • (2009) Cell , vol.137 , pp. 445-458
    • Hartley, P.D.1    Madhani, H.D.2
  • 7
    • 0029026719 scopus 로고
    • Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure
    • V. Iyer, and K. Struhl Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure The EMBO Journal 14 1995 2570 2579
    • (1995) The EMBO Journal , vol.14 , pp. 2570-2579
    • Iyer, V.1    Struhl, K.2
  • 8
    • 0034902187 scopus 로고    scopus 로고
    • Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors
    • G. Langst, and P.B. Becker Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors Journal of Cell Science 114 2001 2561 2568
    • (2001) Journal of Cell Science , vol.114 , pp. 2561-2568
    • Langst, G.1    Becker, P.B.2
  • 9
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • T.J. Richmond, and C.A. Davey The structure of DNA in the nucleosome core Nature 423 2003 145 150
    • (2003) Nature , vol.423 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 11
    • 68349125112 scopus 로고    scopus 로고
    • What controls nucleosome positions?
    • E. Segal, and J. Widom What controls nucleosome positions? Trends in Genetics 25 2009 335 343
    • (2009) Trends in Genetics , vol.25 , pp. 335-343
    • Segal, E.1    Widom, J.2
  • 12
    • 75149135277 scopus 로고    scopus 로고
    • G+C content dominates intrinsic nucleosome occupancy
    • D. Tillo, and T.R. Hughes G+C content dominates intrinsic nucleosome occupancy BMC Bioinformatics 10 2009 442
    • (2009) BMC Bioinformatics , vol.10 , pp. 442
    • Tillo, D.1    Hughes, T.R.2
  • 13
    • 37249077649 scopus 로고    scopus 로고
    • Chromatin remodelling at promoters suppresses antisense transcription
    • I. Whitehouse, O.J. Rando, J. Delrow, and T. Tsukiyama Chromatin remodelling at promoters suppresses antisense transcription Nature 450 2007 1031 1035
    • (2007) Nature , vol.450 , pp. 1031-1035
    • Whitehouse, I.1    Rando, O.J.2    Delrow, J.3    Tsukiyama, T.4
  • 14
    • 78651477233 scopus 로고    scopus 로고
    • High-resolution genome-wide mapping of the primary structure of chromatin
    • Z. Zhang, and B.F. Pugh High-resolution genome-wide mapping of the primary structure of chromatin Cell 144 2011 175 186
    • (2011) Cell , vol.144 , pp. 175-186
    • Zhang, Z.1    Pugh, B.F.2
  • 15
    • 79956316470 scopus 로고    scopus 로고
    • A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
    • Z. Zhang, C.J. Wippo, M. Wal, E. Ward, P. Korber, and B.F. Pugh A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome Science 332 2011 977 980
    • (2011) Science , vol.332 , pp. 977-980
    • Zhang, Z.1    Wippo, C.J.2    Wal, M.3    Ward, E.4    Korber, P.5    Pugh, B.F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.