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Volumn 16, Issue , 2012, Pages 104-112

Efficient codon optimization with motif engineering

Author keywords

Codon optimization; Dynamic programming; Motif engineering; Sequence design

Indexed keywords

CLONING VECTORS; CODON BIAS; CODON OPTIMIZATION; DATA SETS; HOST ORGANISM; NON-NATIVE; RESTRICTION ENZYMES; SEQUENCE DESIGNS; SOURCE CODES; SYNTHETIC PROTEIN; TRANSLATIONAL EFFICIENCIES;

EID: 84865487193     PISSN: 15708667     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jda.2012.04.017     Document Type: Conference Paper
Times cited : (10)

References (20)
  • 3
    • 0142214740 scopus 로고    scopus 로고
    • Codon optimizer: A freeware tool for codon optimization
    • A. Fuglsang Codon optimizer: a freeware tool for codon optimization Protein Expression and Purification 31 2 2003 247 249
    • (2003) Protein Expression and Purification , vol.31 , Issue.2 , pp. 247-249
    • Fuglsang, A.1
  • 4
    • 1842713354 scopus 로고    scopus 로고
    • UpGene: Application of a web-based DNA codon optimization algorithm
    • W. Gao, A. Rzewski, H. Sun, P.D. Robbins, and A. Gambotto UpGene: application of a web-based DNA codon optimization algorithm Biotechnology Progress 20 2 2004 443 448
    • (2004) Biotechnology Progress , vol.20 , Issue.2 , pp. 443-448
    • Gao, W.1    Rzewski, A.2    Sun, H.3    Robbins, P.D.4    Gambotto, A.5
  • 5
    • 23144444226 scopus 로고    scopus 로고
    • JCat: A novel tool to adapt codon usage of a target gene to its potential expression host
    • Web Server Issue
    • A. Grote, K. Hiller, M. Scheer, R. Münch, B. Nörtemann, D.C. Hempel, and D. Jahn JCat: a novel tool to adapt codon usage of a target gene to its potential expression host Nucleic Acids Research 33 Web Server issue 2005 526 531
    • (2005) Nucleic Acids Research , vol.33 , pp. 526-531
    • Grote, A.1    Hiller, K.2    Scheer, M.3    Münch, R.4    Nörtemann, B.5    Hempel, D.C.6    Jahn, D.7
  • 8
    • 0022589865 scopus 로고
    • Codon usage and gene expression
    • L. Holm Codon usage and gene expression Nucleic Acids Research 14 7 1986 3075 3087
    • (1986) Nucleic Acids Research , vol.14 , Issue.7 , pp. 3075-3087
    • Holm, L.1
  • 9
    • 0037095730 scopus 로고    scopus 로고
    • DNAWorks: An automated method for designing oligonucleotides for PCR-based gene synthesis
    • D.M. Hoover, and J. Lubkowski DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis Nucleic Acids Research 30 10 2002 e43
    • (2002) Nucleic Acids Research , vol.30 , Issue.10 , pp. 43
    • Hoover, D.M.1    Lubkowski, J.2
  • 10
    • 19644370646 scopus 로고    scopus 로고
    • GeMS: An advanced software package for designing synthetic genes
    • S. Jayaraj, R. Reid, and D.V. Santi GeMS: an advanced software package for designing synthetic genes Nucleic Acids Research 33 9 2005 3011 3016
    • (2005) Nucleic Acids Research , vol.33 , Issue.9 , pp. 3011-3016
    • Jayaraj, S.1    Reid, R.2    Santi, D.V.3
  • 11
    • 0028804911 scopus 로고
    • Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli
    • J.F. Kane Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli Current Opinion in Biotechnology 6 5 1995 494 500
    • (1995) Current Opinion in Biotechnology , vol.6 , Issue.5 , pp. 494-500
    • Kane, J.F.1
  • 12
    • 0348013051 scopus 로고    scopus 로고
    • Hierarchy of sequence-dependent features associated with prokaryotic translation
    • G. Lithwick, and H. Margalit Hierarchy of sequence-dependent features associated with prokaryotic translation Genome Research 13 12 2003 2665 2673
    • (2003) Genome Research , vol.13 , Issue.12 , pp. 2665-2673
    • Lithwick, G.1    Margalit, H.2
  • 13
    • 34547579086 scopus 로고    scopus 로고
    • OPTIMIZER: A web server for optimizing the codon usage of DNA sequences
    • P. Puigbo, E. Guzman, A. Romeu, and S. Garcia-Vallve OPTIMIZER: a web server for optimizing the codon usage of DNA sequences Nucleic Acids Research 35 Suppl. 2 2007 W126 131
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 2 , pp. 126-131
    • Puigbo, P.1    Guzman, E.2    Romeu, A.3    Garcia-Vallve, S.4
  • 14
    • 84960366641 scopus 로고    scopus 로고
    • A pattern matching algorithm for codon optimization and CpG motif-engineering in DNA expression vectors
    • IEEE Computer Society Washington, DC, USA
    • R.V. Satya, A. Mukherjee, and U. Ranga A pattern matching algorithm for codon optimization and CpG motif-engineering in DNA expression vectors CSB03: Proceedings of the IEEE Computer Society Conference on Bioinformatics 2003 IEEE Computer Society Washington, DC, USA 294 305
    • (2003) CSB03: Proceedings of the IEEE Computer Society Conference on Bioinformatics , pp. 294-305
    • Satya, R.V.1    Mukherjee, A.2    Ranga, U.3
  • 15
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • P.M. Sharp, and W.H. Li The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications Nucleic Acids Research 15 3 1987 1281 1295
    • (1987) Nucleic Acids Research , vol.15 , Issue.3 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 16
    • 0035224078 scopus 로고    scopus 로고
    • Designing better phages
    • S. Skiena Designing better phages Bioinformatics 2001 253 261
    • (2001) Bioinformatics , pp. 253-261
    • Skiena, S.1
  • 17
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia of DNA elements) project
    • The ENCODE Consortium The ENCODE (ENCyclopedia of DNA elements) project Science 306 5696 2004 636 640
    • (2004) Science , vol.306 , Issue.5696 , pp. 636-640
    • Encode Consortium, T.1
  • 18
    • 0022536971 scopus 로고
    • Effect of distribution of unfavourable codons on the maximum rate of gene expression by an heterologous organism
    • S. Varenne, and C. Lazdunski Effect of distribution of unfavourable codons on the maximum rate of gene expression by an heterologous organism Journal of Theoretical Biology 120 1 1986 99 110
    • (1986) Journal of Theoretical Biology , vol.120 , Issue.1 , pp. 99-110
    • Varenne, S.1    Lazdunski, C.2
  • 20
    • 33646582374 scopus 로고    scopus 로고
    • The synthetic gene designer: A flexible web platform to explore sequence manipulation for heterologous expression
    • G. Wu, N. Bashir-Bello, and S.J. Freeland The synthetic gene designer: a flexible web platform to explore sequence manipulation for heterologous expression Protein Expression and Purification 47 2 2006 441 445
    • (2006) Protein Expression and Purification , vol.47 , Issue.2 , pp. 441-445
    • Wu, G.1    Bashir-Bello, N.2    Freeland, S.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.