메뉴 건너뛰기




Volumn 31, Issue 2, 2003, Pages 247-249

Codon optimizer: A freeware tool for codon optimization

Author keywords

[No Author keywords available]

Indexed keywords


EID: 0142214740     PISSN: 10465928     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1046-5928(03)00213-4     Document Type: Article
Times cited : (68)

References (22)
  • 1
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • T. Ikemura, Codon usage and tRNA content in unicellular and multicellular organisms, Mol. Biol. Evol. 2 (1985) 13-34.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 2
    • 0023126266 scopus 로고
    • Coevolution of codon usage and transfer RNA abundance
    • M. Bulmer, Coevolution of codon usage and transfer RNA abundance, Nature 325 (1987) 728-730.
    • (1987) Nature , vol.325 , pp. 728-730
    • Bulmer, M.1
  • 3
    • 0020491327 scopus 로고
    • Codon usage in bacteria: Correlation with gene expressivity
    • M. Gouy, C, Gautier, Codon usage in bacteria: correlation with gene expressivity, Nucleic Acids Res. 10 (1982) 7055-7074.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 7055-7074
    • Gouy, M.1    Gautier, C.2
  • 4
    • 0036389792 scopus 로고    scopus 로고
    • Improvement of human interferon HUIFNalpha2 and HCV core protein expression levels in Escherichia coli but not of HUIFNalpha8 by using the tRNA(AGA/AGG)
    • N. Acosta-Rivero, J.C. Sanchez, J. Morales, Improvement of human interferon HUIFNalpha2 and HCV core protein expression levels in Escherichia coli but not of HUIFNalpha8 by using the tRNA(AGA/AGG), Biochem. Biophys. Res. Commun. 296 (2002) 1303-1309.
    • (2002) Biochem. Biophys. Res. Commun. , vol.296 , pp. 1303-1309
    • Acosta-Rivero, N.1    Sanchez, J.C.2    Morales, J.3
  • 5
    • 0030151989 scopus 로고    scopus 로고
    • Specific replacement of consecutive AGG codons results in high-level expression of human cardiac troponin T in Escherichia coli
    • X. Hu, Q. Shi, T. Yang, G. Jackowski, Specific replacement of consecutive AGG codons results in high-level expression of human cardiac troponin T in Escherichia coli, Protein Expr. Purif. 7 (1996) 289-293.
    • (1996) Protein Expr. Purif. , vol.7 , pp. 289-293
    • Hu, X.1    Shi, Q.2    Yang, T.3    Jackowski, G.4
  • 6
    • 0032030138 scopus 로고    scopus 로고
    • Codon optimization of the gene encoding a domain from human type 1 neurofibromin protein results in a threefold improvement in expression level in Escherichia coli
    • R.S. Hale, G. Thompson, Codon optimization of the gene encoding a domain from human type 1 neurofibromin protein results in a threefold improvement in expression level in Escherichia coli, Protein Expr. Purif. 12 (1998) 185-188.
    • (1998) Protein Expr. Purif. , vol.12 , pp. 185-188
    • Hale, R.S.1    Thompson, G.2
  • 7
    • 0036447572 scopus 로고    scopus 로고
    • Effect of tandem rare codon substitution and vector-host combinations on the expression of the EBV gp110 C-terminal domain in Escherichia coli
    • S.J. Park, S.K. Lee, B.J. Lee, Effect of tandem rare codon substitution and vector-host combinations on the expression of the EBV gp110 C-terminal domain in Escherichia coli, Protein Expr. Purif. 24 (2002) 470-480.
    • (2002) Protein Expr. Purif. , vol.24 , pp. 470-480
    • Park, S.J.1    Lee, S.K.2    Lee, B.J.3
  • 8
    • 0032126040 scopus 로고    scopus 로고
    • Hyperexpression of rat spermatidal protein tp2 in Escherichia coli by codon optimization and engineering the vector-encoded 5′ utr
    • A.R. Meetei, M.R.S. Rao, Hyperexpression of rat spermatidal protein tp2 in Escherichia coli by codon optimization and engineering the vector-encoded 5′ utr, Protein Expr. Purif. 13 (1998) 184-190.
    • (1998) Protein Expr. Purif. , vol.13 , pp. 184-190
    • Meetei, A.R.1    Rao, M.R.S.2
  • 9
    • 0036022161 scopus 로고    scopus 로고
    • Codon optimization improves heterologous expression of a Schistosoma mansoni cDNa in HEK293 cells
    • F.F. Hamdan, A. Mousa, P. Ribeiro, Codon optimization improves heterologous expression of a Schistosoma mansoni cDNA in HEK293 cells, Parasitol. Res. 88 (2002) 583-586.
    • (2002) Parasitol. Res. , vol.88 , pp. 583-586
    • Hamdan, F.F.1    Mousa, A.2    Ribeiro, P.3
  • 10
    • 0034755765 scopus 로고    scopus 로고
    • Multiple effects of codon usage optimization on expression and immunogenicity of dna candidate vaccines encoding the human immunodeficiency virus type 1 gag protein
    • L. Deml, A. Bojak, S. Steck, M. Graf, J. Wild, R. Schirmbeck, H. Wolf, R. Wagner, Multiple effects of codon usage optimization on expression and immunogenicity of dna candidate vaccines encoding the human immunodeficiency virus type 1 gag protein, J. Virol. 75 (2001) 10991-11001.
    • (2001) J. Virol. , vol.75 , pp. 10991-11001
    • Deml, L.1    Bojak, A.2    Steck, S.3    Graf, M.4    Wild, J.5    Schirmbeck, R.6    Wolf, H.7    Wagner, R.8
  • 11
    • 0036425270 scopus 로고    scopus 로고
    • Synonymous codon usage bias and the expression of human glucocerebrosidase in the methylotrophic yeast, Pichia pastoris
    • G. Sinclair, F.Y.M. Choy, Synonymous codon usage bias and the expression of human glucocerebrosidase in the methylotrophic yeast, Pichia pastoris, Protein Expr. Purif. 26 (2002) 96-105.
    • (2002) Protein Expr. Purif. , vol.26 , pp. 96-105
    • Sinclair, G.1    Choy, F.Y.M.2
  • 13
  • 15
    • 0037297122 scopus 로고    scopus 로고
    • Mistranslational errors associated with the rare arginine codon CGG in Escherichia coli. 29
    • D.E. McNulty, B.A. Claffee, M.J. Huddleston, J.F. Kane, Mistranslational errors associated with the rare arginine codon CGG in Escherichia coli. 29, Protein Expr. Purif. 27 (2003) 365-374.
    • (2003) Protein Expr. Purif. , vol.27 , pp. 365-374
    • McNulty, D.E.1    Claffee, B.A.2    Huddleston, M.J.3    Kane, J.F.4
  • 16
    • 0030568996 scopus 로고    scopus 로고
    • High-level misincorporation of lysine for arginine at AGA codons in a fusion protein expressed in Escherichia coli
    • T.L. Calderone, R.D. Stevens, T.G. Oas, High-level misincorporation of lysine for arginine at AGA codons in a fusion protein expressed in Escherichia coli, J. Mol. Biol. 262 (1996) 407-412.
    • (1996) J. Mol. Biol. , vol.262 , pp. 407-412
    • Calderone, T.L.1    Stevens, R.D.2    Oas, T.G.3
  • 17
    • 0031938042 scopus 로고    scopus 로고
    • High level, context dependent misincorporation of lysine for arginine in Saccharomyces cerevisiae a1 homeodomain expressed in Escherichia coli
    • M.D. Forman, R.F. Stack, P.S. Masters, C.R. Hauer, S.M. Baxter, High level, context dependent misincorporation of lysine for arginine in Saccharomyces cerevisiae a1 homeodomain expressed in Escherichia coli, Protein Sci. 7 (1998) 500-503.
    • (1998) Protein Sci. , vol.7 , pp. 500-503
    • Forman, M.D.1    Stack, R.F.2    Masters, P.S.3    Hauer, C.R.4    Baxter, S.M.5
  • 18
    • 0037133638 scopus 로고    scopus 로고
    • Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli
    • C.S. Hayes, B. Bose, R.T. Sauer, Stop codons preceded by rare arginine codons are efficient determinants of SsrA tagging in Escherichia coli, Proc. Natl. Acad. Sci. USA 99 (2002) 3440-3445.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 3440-3445
    • Hayes, C.S.1    Bose, B.2    Sauer, R.T.3
  • 20
    • 0029828233 scopus 로고    scopus 로고
    • Strategies for achieving high-level expression of genes in Escherichia coli
    • S.C. Makrides, Strategies for achieving high-level expression of genes in Escherichia coli, Microbiol. Rev. 60 (1996) 512-538.
    • (1996) Microbiol. Rev. , vol.60 , pp. 512-538
    • Makrides, S.C.1
  • 21
    • 0021760027 scopus 로고
    • The codon preference plot: Graphic analysis of protein coding sequences and prediction of gene expression
    • M. Gribskov, J. Devereux, R.R. Burgess, The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression, Nucleic Acids Res. 12 (1984) 539-549.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 539-549
    • Gribskov, M.1    Devereux, J.2    Burgess, R.R.3
  • 22
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • P.M. Sharp, W.-H. Li, The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications, Nucleic Acids Res. 15 (1987) 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.-H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.