메뉴 건너뛰기




Volumn 35, Issue 6, 2012, Pages 374-379

Neoscardovia arbecensis gen. nov., sp. nov., isolated from porcine slurries

Author keywords

16S rRNA; Bifidobacterium; Neoscardovia arbecensis; Partial genome sequencing; Porcine; Taxonomy

Indexed keywords

CARDIOLIPIN; FATTY ACID; GLYCOLIPID; PEPTIDOGLYCAN; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; RNA 16S;

EID: 84865427956     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2012.06.007     Document Type: Article
Times cited : (13)

References (29)
  • 1
    • 79958241540 scopus 로고    scopus 로고
    • Bifidobacterial diversity and the development of new microbial source tracking indicators
    • Balleste E., Blanch A.R. Bifidobacterial diversity and the development of new microbial source tracking indicators. Appl. Environ. Microbiol. 2011, 77:3518-3525.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 3518-3525
    • Balleste, E.1    Blanch, A.R.2
  • 2
    • 0025741208 scopus 로고
    • Detection of bifidobacteria by using propionic acid as a selective agent
    • Beerens H. Detection of bifidobacteria by using propionic acid as a selective agent. Appl. Environ. Microbiol. 1991, 57:2418-2419.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 2418-2419
    • Beerens, H.1
  • 3
    • 2442644318 scopus 로고    scopus 로고
    • Multiplex PCR with 16S rRNA gene-targeted primers of Bifidobacterium spp. to identify sources of fecal pollution
    • Bonjoch X., Balleste E., Blanch A.R. Multiplex PCR with 16S rRNA gene-targeted primers of Bifidobacterium spp. to identify sources of fecal pollution. Appl. Environ. Microbiol. 2004, 70:3171-3175.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3171-3175
    • Bonjoch, X.1    Balleste, E.2    Blanch, A.R.3
  • 4
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 6
    • 0014057171 scopus 로고
    • Pathway of glucose fermentation in relation to the taxonomy of bifidobacteria
    • De Vries W., Stouthamer A.H. Pathway of glucose fermentation in relation to the taxonomy of bifidobacteria. J. Bacteriol. 1967, 93:574-576.
    • (1967) J. Bacteriol. , vol.93 , pp. 574-576
    • De Vries, W.1    Stouthamer, A.H.2
  • 7
    • 71549164083 scopus 로고    scopus 로고
    • Specificity and sensitivity evaluation of novel and existing Bacteroidales and Bifidobacteria-specific PCR assays on feces and sewage samples and their application for microbial source tracking in Ireland
    • Dorai-Raj S., O'Grady J., Colleran E. Specificity and sensitivity evaluation of novel and existing Bacteroidales and Bifidobacteria-specific PCR assays on feces and sewage samples and their application for microbial source tracking in Ireland. Water Res. 2009, 43:4980-4988.
    • (2009) Water Res. , vol.43 , pp. 4980-4988
    • Dorai-Raj, S.1    O'Grady, J.2    Colleran, E.3
  • 8
    • 22544436122 scopus 로고    scopus 로고
    • Prevotella marshii sp. nov. and Prevotella baroniae sp. nov., isolated from the human oral cavity
    • Downes J., Sutcliffe I., Tanner A.C., Wade W.G. Prevotella marshii sp. nov. and Prevotella baroniae sp. nov., isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. 2005, 55:1551-1555.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1551-1555
    • Downes, J.1    Sutcliffe, I.2    Tanner, A.C.3    Wade, W.G.4
  • 10
    • 0030176177 scopus 로고    scopus 로고
    • Detection of fructose-6-phosphate phosphoketolase (F6PPK), a key enzyme of the bifid-shunt, in Gardnerella vaginalis
    • Gavini F., Van Esbroeck M., Touzel J.P., Fourment A., Goossens H. Detection of fructose-6-phosphate phosphoketolase (F6PPK), a key enzyme of the bifid-shunt, in Gardnerella vaginalis. Anaerobe 1996, 2:191-193.
    • (1996) Anaerobe , vol.2 , pp. 191-193
    • Gavini, F.1    Van Esbroeck, M.2    Touzel, J.P.3    Fourment, A.4    Goossens, H.5
  • 12
    • 0034807791 scopus 로고    scopus 로고
    • New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequences
    • Jian W., Zhu L., Dong X. New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequences. Int. J. Syst. Evol. Microbiol. 2001, 51:1633-1638.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1633-1638
    • Jian, W.1    Zhu, L.2    Dong, X.3
  • 14
    • 0036122816 scopus 로고    scopus 로고
    • The detection of Bifidobacterium adolescentis by colony hybridization as an indicator of human faecal pollution
    • Lynch P.A., Gilpin B.J., Sinton L.W., Savill M.G. The detection of Bifidobacterium adolescentis by colony hybridization as an indicator of human faecal pollution. J. Appl. Microbiol. 2002, 92:526-533.
    • (2002) J. Appl. Microbiol. , vol.92 , pp. 526-533
    • Lynch, P.A.1    Gilpin, B.J.2    Sinton, L.W.3    Savill, M.G.4
  • 15
    • 79951681083 scopus 로고    scopus 로고
    • Evaluation of matrix-assisted laser desorption ionization-time of flight whole cell profiles for assessing the cultivable diversity of aerobic and moderately halophilic prokaryotes thriving in solar saltern sediments
    • Munoz R., Lopez-Lopez A., Urdiain M., Moore E.R., Rosselló-Móra R. Evaluation of matrix-assisted laser desorption ionization-time of flight whole cell profiles for assessing the cultivable diversity of aerobic and moderately halophilic prokaryotes thriving in solar saltern sediments. Syst. Appl. Microbiol. 2011, 34:69-75.
    • (2011) Syst. Appl. Microbiol. , vol.34 , pp. 69-75
    • Munoz, R.1    Lopez-Lopez, A.2    Urdiain, M.3    Moore, E.R.4    Rosselló-Móra, R.5
  • 16
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., De Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 17
    • 0023476285 scopus 로고
    • Detection and localization of single base changes by denaturing gradient gel electrophoresis
    • Myers R.M., Maniatis T., Lerman L.S. Detection and localization of single base changes by denaturing gradient gel electrophoresis. Methods Enzymol. 1987, 155:501-527.
    • (1987) Methods Enzymol. , vol.155 , pp. 501-527
    • Myers, R.M.1    Maniatis, T.2    Lerman, L.S.3
  • 18
    • 0037883381 scopus 로고    scopus 로고
    • Use of Bifidobacterium dentium as an indicator of the origin of fecal water pollution
    • Nebra Y., Bonjoch X., Blanch A.R. Use of Bifidobacterium dentium as an indicator of the origin of fecal water pollution. Appl. Environ. Microbiol. 2003, 69:2651-2656.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2651-2656
    • Nebra, Y.1    Bonjoch, X.2    Blanch, A.R.3
  • 19
    • 0141635220 scopus 로고    scopus 로고
    • Carbohydrate preferences of Bifidobacterium species isolated from the human gut
    • Palframan R.J., Gibson G.R., Rastall R.A. Carbohydrate preferences of Bifidobacterium species isolated from the human gut. Curr. Issues Intest. Microbiol. 2003, 4:71-75.
    • (2003) Curr. Issues Intest. Microbiol. , vol.4 , pp. 71-75
    • Palframan, R.J.1    Gibson, G.R.2    Rastall, R.A.3
  • 20
    • 73149098333 scopus 로고    scopus 로고
    • Shifting the genomic gold standard for the prokaryotic species definition
    • Richter M., Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:19126-19131.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 19126-19131
    • Richter, M.1    Rosselló-Móra, R.2
  • 22
    • 0001944767 scopus 로고
    • The fructose-6-phosphate shunt as a peculiar pattern of hexose degradation in the genus Bifidobacterium
    • Scardovi V., Trovatelli L.D. The fructose-6-phosphate shunt as a peculiar pattern of hexose degradation in the genus Bifidobacterium. Ann. Microbiol. 1965, 15:19-29.
    • (1965) Ann. Microbiol. , vol.15 , pp. 19-29
    • Scardovi, V.1    Trovatelli, L.D.2
  • 23
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of data and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of data and mixed models. Bioinformatics 2006, 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 24
    • 0021715576 scopus 로고
    • Determination of DNA base composition by reversed-phase high-performance liquid chromatography
    • Tamaoka J., Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol. Lett. 1984, 25:125-128.
    • (1984) FEMS Microbiol. Lett. , vol.25 , pp. 125-128
    • Tamaoka, J.1    Komagata, K.2
  • 25
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 1997, 25:4876-4882.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 26
    • 8744316858 scopus 로고    scopus 로고
    • Insights into the taxonomy, genetics and physiology of bifidobacteria
    • Ventura M., Van Sinderen D., Fitzgerald G.F., Zink R. Insights into the taxonomy, genetics and physiology of bifidobacteria. Anton. Leeuw. 2004, 86:205-223.
    • (2004) Anton. Leeuw. , vol.86 , pp. 205-223
    • Ventura, M.1    Van Sinderen, D.2    Fitzgerald, G.F.3    Zink, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.