High-density mapping of the earliness per se-3Am (Eps-3Am) locus in diploid einkorn wheat and its relation to the syntenic regions in rice and Brachypodium distachyon L.

Molecular Breeding

Volumn 30, Issue 2, 2012, Pages 1097-1108

  Gawroński, Piotr ^a   Schnurbusch, Thorsten ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

Author keywords

Earliness per se; Genetic linkage mapping; QTL analysis; Synteny

Indexed keywords

MAPPING; PLANTS (BOTANY);

DENSITY MAPPING; EARLINESS PER SE; GENETIC LINKAGE; GENETIC LINKAGE MAPPING; LINKAGE MAPPING; QTL ANALYSIS; RECOMBINANT INBRED LINES; SYNTENIC REGIONS; SYNTENY; TRITICUM;

CHROMOSOMES;

BRACHYPODIUM; BRACHYPODIUM DISTACHYON; HORDEUM; HORDEUM VULGARE SUBSP. VULGARE; ORYZA SATIVA; POACEAE; TRITICUM AESTIVUM; TRITICUM MONOCOCCUM; TRITICUM SP.;

EID: 84865410573     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-011-9697-0     Document Type: Article

References (58)

1. Ali ML, Baenziger PS, Al Ajlouni Z, Campbell BT, Gill KS, Eskridge KM, Mujeeb-Kazi A, Dweikat I (2011) Mapping QTL for agronomic traits on wheat chromosome 3A and a comparison of recombinant inbred chromosome line populations. Crop Sci 51: 553-566.
2. Beales J, Turner A, Griffiths S, Snape JW, Laurie DA (2007) A pseudo-response regulator is misexpressed in the photoperiod insensitive Ppd-D1a mutant of wheat (Triticum aestivum L.). Theor Appl Genet 115: 721-733.
3. Dilbirligi M, Erayman M, Campbell BT, Randhawa HS, Baenziger PS, Dweikat I, Gill KS (2006) High-density mapping and comparative analysis of agronomically important traits on wheat chromosome 3A. Genomics 88: 74-87.
4. Distelfeld A, Uauy C, Fahima T, Dubcovsky J (2006) Physical map of the wheat high-grain protein content gene Gpc-B1 and development of a high-throughput molecular marker. New Phytol 169: 753-763.
5. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
6. Faricelli ME, Valarik M, Dubcovsky J (2010) Control of flowering time and spike development in cereals: the earliness per seEps-1 region in wheat, rice, and Brachypodium. Funct Integr Genomics 10: 293-306.
7. Farré A, Lacasa Benito I, Cistué L, de Jong J, Romagosa I, Jansen J (2010) Linkage map construction involving a reciprocal translocation. Theor Appl Genet 122: 1029-1037.
8. Feldman M (ed) (2001) Origin of cultivated wheat. Lavoisier Publishing, Paris.
9. Flood RG, Halloran GM (1984) Temperature as a component of the expression of developmental responses in wheat. Euphytica 33: 91-98.
10. Griffiths S, Simmonds J, Leverington M, Wang Y, Fish L, Sayers L, Alibert L, Orford S, Wingen L, Herry L, Faure S, Laurie D, Bilham L, Snape J (2009) Meta-QTL analysis of the genetic control of ear emergence in elite European winter wheat germplasm. Theor Appl Genet 119: 383-395.
11. Hall TA (1999) Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/nt. Nucleic Acid Symp Ser 41: 95-98.
12. Hanocq E, Laperche A, Jaminon O, Lainé A, Le Gouis J (2007) Most significant genome regions involved in the control of earliness traits in bread wheat, as revealed by QTL meta-analysis. Theor Appl Genet 114: 569-584.
13. Hedrick PW, Muona O (1990) Linkage of viability genes to marker loci in selfing organisms. Heredity 64: 67-72.
14. Hoogendoorn J (1985) A reciprocal F1 monosomic analysis of the genetic-control of time of ear emergence, number of leaves and number of spikelets in wheat (Triticum aestivum L.). Euphytica 34: 545-558.
15. Hori K, Takehara S, Nankaku N, Sato K, Sasakuma T, Takeda K (2007) Barley EST markers enhance map saturation and QTL mapping in diploid wheat. Breed Sci 57: 39-45.
16. International Brachypodium Initiative (2009) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463: 763-768.
17. International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
18. Jansen RC (2003) Quantitative trait loci in inbred lines. In: Balding DJ, Bishop M, Cannings C (eds) Handbook of statistical genetics. Wiley, Chichester, pp 445-476.
19. Kasha KJ, Kao KN (1970) High frequency haploid production in barley (Hordeum vulgare L.). Nature 225: 874-876.
20. Kato K, Yamagata H (1988) Method for evaluation of chilling requirement and narrow-sense earliness of wheat cultivars. Jpn J Breed 38: 172-186.
21. Laurie DA, Pratchett N, Bezant JH, Snape JW (1995) RFLP mapping of 5 major genes and 8 quantitative trait loci controlling flowering time in a winter x spring barley (Hordeum vulgare L.) cross. Genome 38: 575-585.
22. Law CN, Worland AJ (1997) Genetic analysis of some flowering time and adaptive traits in wheat. New Phytol 137: 19-28.
23. Law CN, Worland AJ, Giorgi B (1976) Genetic-control of ear-emergence time by chromosomes-5A and chromosomes-5D of wheat. Heredity 36: 49-58.
24. Le Gouis J, Bordes J, Ravel C, Heumez E, Faure S, Praud S, Galic N, Remoue C, Balfourier F, Allard V, Rousset M (2011) Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat. Theor Appl Genet 1-15. doi: 10. 1007/s00122-011-1732-3.
25. Lewis S, Faricelli ME, Appendino ML, Valarik M, Dubcovsky J (2008) The chromosome region including the earliness per se locus Eps-A(m)1 affects the duration of early developmental phases and spikelet number in diploid wheat. J Exp Bot 59: 3595-3607.
26. Lorieux M, Goffinet B, Perrier X, Deleon DG, Lanaud C (1995) Maximum-likelihood models for mapping genetic-markers showing segregation distortion. 1. Backcross populations. Theor Appl Genet 90: 73-80.
27. Luo L, Xu S (2003) Mapping viability loci using molecular markers. Heredity 90: 459-467.
28. Marais GF (1992) Genetic control of a response to the segregation distortion allele, Sd-1d, in the common wheat line 'Indis'. Euphytica 60: 89-95.
29. Marquez-Cedillo LA, Hayes PM, Kleinhofs A, Legge WG, Rossnagel BG, Sato K, Ullrich SE, Wesenberg DM (2001) QTL analysis of agronomic traits in barley based on the doubled haploid progeny of two elite North American varieties representing different germplasm groups. Theor Appl Genet 103: 625-637.
30. Mayer KFX, Martis M, Hedley PE, Simkova H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubalakova M, Suchankova P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Dolezel J, Waugh R, Stein N (2011) Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell 23: 1249-1263.
31. Millet E (1987) Monosomic analysis of heading date and spikelet number in the common wheat (Triticum aestivum L.) multi-spikelet line Noa. Theor Appl Genet 74: 487-492.
32. Miura H, Worland AJ (1994) Genetic control of vernalization, day-length response, and earliness per se by homoeologous group-3 chromosomes in wheat. Plant Breed 113: 160-169.
33. Miura H, Nakagawa M, Worland AJ (1999) Control of ear emergence time by chromosome 3A of wheat. Plant Breed 118: 85-87.
34. Neff MM, Turk E, Kalishman M (2002) Web-based primer design for single nucleotide polymorphism analysis. Trends Genet 18: 613-615.
35. ® 5, Software for the mapping of quantitative trait loci in experimental populations. Kyazma B. V., Wageningen.
36. ® 4, Software for the calculation of genetic linkage maps in experimental populations. Kyazma B. V., Wageningen.
37. Paillard S, Schnurbusch T, Winzeler M, Messmer M, Sourdille P, Abderhalden O, Keller B, Schachermayr G (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.). Theor Appl Genet 107: 1235-1242.
38. Quillet MC, Madjidian N, Griveau Y, Serieys H, Tersac M, Lorieux M, Berville A (1995) Mapping genetic factors controlling pollen viability in an interspecific cross in Helianthus sect Helianthus. Theor Appl Genet 91: 1195-1202.
39. Rozen S, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365-386.
40. Sato K, Nankaku N, Takeda K (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103: 110-117.
41. Scarth R, Law CN (1983) The location of the photoperiod gene, Ppd2 and an additional genetic factor for ear emergence time on chromosome 2B of wheat. Heredity 51: 607-619.
42. Schnurbusch T, Collins NC, Eastwood RF, Sutton T, Jefferies SP, Langridge P (2007) Fine mapping and targeted SNP survey using rice-wheat gene collinearity in the region of the Bo1 boron toxicity tolerance locus of bread wheat. Theor Appl Genet 115: 451-461.
43. Semagn K, Bjornstad A, Skinnes H, Maroy AG, Tarkegne Y, William M (2006) Distribution of DArT, AFLP, and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population. Genome 49: 545-555.
44. Shindo C, Sasakuma T (2001) Early heading mutants of T. monococcum and Ae. squarrosa, A- and D-genome ancestral species of hexaploid wheat. Breed Sci 51: 95-98.
45. Shindo C, Sasakuma T, Watanabe N, Noda K (2002) Two-gene systems of vernalization requirement and narrow-sense earliness in einkorn wheat. Genome 45: 563-569.
46. Singh K, Ghai M, Garg M, Chhuneja P, Kaur P, Schnurbusch T, Keller B, Dhaliwal HS (2007) An integrated molecular linkage map of diploid wheat based on a Triticum boeoticum x T. monococcum RIL population. Theor Appl Genet 115: 301-312.
47. Slafer GA (1996) Differences in phasic development rate amongst wheat cultivars independent of responses to photoperiod and vernalization. A viewpoint of the intrinsic earliness hypothesis. J Agric Sci 126: 403-419.
48. Snape JW, Sarma R, Quarrie SA, Fish L, Galiba G, Sutka J (2001) Mapping genes for flowering time and frost tolerance in cereals using precise genetic stocks. Euphytica 120: 309-315.
49. m2 in diploid wheat. J Hered 91: 304-306.
50. Turner A, Beales J, Faure S, Dunford RP, Laurie DA (2005) The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science 310: 1031-1034.
51. Vincze T, Posfai J, Roberts RJ (2003) NEBcutter: a program to cleave DNA with restriction enzymes. Nucleic Acids Res 31: 3688-3691.
52. Welsh JR, Keim DL, Pirasteh B, Richards RD (1973) Genetic control of photoperiod response in wheat. In: Sears ER, Sears LMS (eds) Proceedings of the 4th international wheat genetics symposium. University of Missouri Press, Columbia, Missouri, pp 879-884.
53. Worland AJ, Law CN (1986) Genetic analysis of chromosome 2D of wheat. The location of genes affecting height, day-length insensitivity, hybrid dwarfism and yellow-rust resistance. Z Pflanzenzucht 96: 331-345.
54. Xue SL, Zhang ZZ, Lin F, Kong ZX, Cao Y, Li CJ, Yi HY, Mei MF, Zhu HL, Wu J, Xu HB, Zhao DM, Tian DG, Zhang CQ, Ma Z (2008) A high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags. Theor Appl Genet 117: 181-189.
55. Yan L, Loukoianov A, Tranquilli G, Helguera M, Fahima T, Dubcovsky J (2003) Positional cloning of the wheat vernalization gene Vrn1. Proc Natl Acad Sci USA 100: 6263-6268.
56. Yan LL, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen JL, Echenique V, Dubcovsky J (2004) The wheat Vrn2 gene is a flowering repressor down-regulated by vernalization. Science 303: 1640-1644.
57. Yan L, Fu D, Li C, Blechl A, Tranquilli G, Bonafede M, Sanchez A, Valarik M, Yasuda S, Dubcovsky J (2006) The wheat and barley vernalization gene Vrn3 is an orthologue of FT. Proc Natl Acad Sci USA 103: 19581-19586.
58. Zhang L, Wang S, Li H, Deng Q, Zheng A, Li S, Li P, Li Z, Wang J (2010) Effects of missing marker and segregation distortion on QTL mapping in F2 populations. Theor Appl Genet 121: 1071-1082.