Barley EST markers enhance map saturation and QTL mapping in diploid wheat

Breeding Science

Volumn 57, Issue 1, 2007, Pages 39-45

  Hori, Kiyosumi ^a   Takehara, Sayuri ^a   Nankaku, Nami ^a   Sato, Kazuhiro ^a   Sasakuma, Tetsuo ^b   Takeda, Kazuyoshi ^a  

^a OKAYAMA UNIVERSITY   (Japan)

^b YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

Expressed sequence tags; Hordeum vulgare; Linkage map; Quantitative trait loci; Triticum monococcum

Indexed keywords

HORDEUM; HORDEUM VULGARE; TRITICUM AESTIVUM; TRITICUM MONOCOCCUM;

EID: 33947214950     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.57.39     Document Type: Article

References (25)

1. Basten, C.J., B.S. Weir and Z.B. Zeng (2002) QTL cartographer, Version 1.16. A reference manual and tutorial for QTL mapping. Department of Statistics, North Carolina State University, Raleigh, NC (http://statgen.ncsu.edu/qtlcart/ cartographer.html).
2. Bothmer, R. von, K. Sato, T. Komatsuda, S. Yasuda and G. Fischbeck (2003) The domestication of cultivated barley. In "Diversity in Barley (Hordeum vulgare)" Bothmer, R. von, Th. van Hintum, H. Knüpffer and K. Sato (eds.), Elsevier Science B.V., Amsterdam. p. 9-27.
3. Devos, K.M., J. Dubcovsky, J. Dvorák, C.N. Chinoy and M.D. Gale (1995) Structural evolution of wheat chromosomes 4A, 5A, and 7B and its impact on recombination. Theor. Appl. Genet. 91: 282-288.
4. Devos, K.M. and M.D. Gale (1997) Comparative genetics in the grasses. Plant Mol. Biol. 35: 3-15.
5. Dubcovsky, J., M.C. Luo, G.Y. Zhong, R. Bransteitter, A. Desai, A. Kilian, A. Kleinhofs and J. Dvorak (1996) Genetic map of diploid wheat, Triticum monococcum L., and its comparison with maps of Hordeum vulgare L. Genetics 143: 983-999.
6. Feldman, M., F.G. Lupton and T.E. Miller (1995) Wheats. In "Evolution of crop plants second edition" Smartt, J. and N.W. Simmonds (eds.), Longman Scientific & Technical, Harlow, Essex. England. p. 184-192.
7. Hagras, A.A., M. Kishii, K. Sato, H. Tanaka and H. Tsujimoto (2005) Extended application of barley EST markers for the analysis of alien chromosomes added to wheat genetic background. Breed. Sci. 55: 335-342.
8. Holton, T.A., J.T. Christopher, L. McClure, N. Harker and R.J. Henty (2002) Identification and mapping of polymorphism SSR markers from expressed sequences of barley and wheat. Mol. Breed. 9: 63-71.
9. Hori, K., T. Kobayashi, K. Sato and K. Takeda (2005a) QTL analysis of Fusarium head blight resistance using a high-density linkage map in barley. Theor. Appl. Genet. 111: 1661-1672.
10. Hori, K., K. Sato, N. Nankaku and K. Takeda (2005b) QTL analysis in recombinant chromosome substitution lines and doubled haploid lines derived from a cross between Hordeum vulgare ssp. vulgare and Hordeum vulgare ssp. spontaneum. Mol. Breed. 16: 295-311.
11. Kojima, J., T. Nagaoka, K. Noda and Y. Ogihara (1998) Genetic linkage map of ISSR and RAPD markers in Einkorn wheat in relation to that of RFLP markers. Theor. Appl. Genet. 96: 37-45.
12. Kosambi, D.D. (1944) The estimation of map distances from recombination values. Ann. Eugen. 12: 172-175.
13. Lander, E.S., P. Green, J. Abrahamson, A. Barlow and M.J. Daly (1987) MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
14. Laurie, D.A. and K.M. Devos (2002) Trends in comparative genetics and their potential impacts on wheat and barley research. Plant Mol. Biol. 48: 729-740.
15. Linde-Laursen, I., J.S. Heslop-Harrison, K.W. Shepherd and S. Taketa (1997) The barley genome and its relationship with the wheat genomes. A survey with an internationally agreed recommendation for barley chromosome nomenclature. Hereditas 126: 1-16.
16. Moore, G., K.M. Devos, Z. Wang and M.D. Gale (1995) Grasses, line up and form a circle. Curr. Biol. 5: 737-739.
17. Mori, M., N. Uchino, M. Chono, K. Kato and H. Miura (2005) Mapping QTLs for grain dormancy on wheat chromosome 3A and the group 4 chromosomes, and their combined effect. Theor. Appl. Genet. 110: 1315-1323.
18. Osa, M., K. Kato, M. Mori, C. Shindo, A. Torada and H. Miura (2003) Mapping QTLs for seed dormancy and the Vp1 homologue on chromosome 3A in wheat. Theor. Appl. Genet. 106: 1491-1496.
19. Sato, K., N. Nankaku, Y. Motoi and K. Takeda (2004) A large scale mapping of ESTs on barley genome. In "Proc. 9th International Barley Genetics Symposium, Vol. 1." Spunar, J. and J. Janikova (eds.), Committee of 9th International Barley Genetics Symposium, Brno, Czech Republic. p. 79-85.
20. Shindo, C., T. Sasakuma, N. Watanabe and K. Noda (2002) Two-gene systems of vernalization requirement and narrow-sense earliness in einkorn wheat. Genome 45: 563-569.
21. Taenzler, B., R.F. Esposti, P. Vaccino, A. Brandolini, S. Effgen, M.Heun, R. Schäfer-Pregel, B. Borghi and F. Salamini (2002) Molecular linkage map of Einkorn wheat: mapping of storage-protein anf soft-glume genes and bread-making quality QTLs. Genet. Res. Camb. 80: 131-143.
22. Takahashi, R. and J. Yamamoto (1951) Physiology and genetics of ear emergence in barley and wheat. I. The inheritance and linkage of "light sensitiveness" in barley. Nogaku Kenkyu 40: 13-24 (In Japanese).
23. Takeda, K. and K. Hori (2007) Geographical differentiation and diallel analysis of seed dormancy in barley. Euphytica 153: 249-256.
24. Varshney, R.K., R. Sigmund, A. Börner, V. Korzun, N. Stein, M.E.Sorrells, P. Langridge and A. Graner (2005) Interspecific transferability and comparative mapping of barley EST-SSR markers in wheat, rye and rice. Plant Sci. 168: 195-202.
25. Yan, L., A. Loukoianov, A. Blechl, G. Tranquilli, W. Ramakrishna, P. SanMiguel, J.L. Bennetzen, V. Echenique and J. Dubcovsky (2004) The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science 303: 1640-1644.