Targeted glycomics by selected reaction monitoring for highly sensitive glycan compositional analysis

Proteomics

Volumn 12, Issue 15-16, 2012, Pages 2510-2522

  Zhang, Hongquan ^a   Wang, Zhaohui ^a   Stupak, Jacek ^a   Ghribi, Othman ^b   Geiger, Jonathan D ^b   Liu, Qing Yan ^a   Li, Jianjun ^a  

^a NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^b UNIVERSITY OF NORTH DAKOTA   (United States)

Author keywords

Carbohydrate; Glycoproteomics; Glycosylation; LC SRM; N Glycan; Quantitative glycomics

Indexed keywords

CHOLESTEROL; GLYCAN; MANNONONAOSE DI( N ACETYLGLUCOSAMINE); N ACETYLGLUCOSAMINE; PROTEIN; RIBONUCLEASE; UNCLASSIFIED DRUG;

ANALYTIC METHOD; ARTICLE; ATOM; BLOOD SAMPLING; CANCER CELL; CHOLESTEROL DIET; CONTROLLED STUDY; ENZYME RELEASE; GLYCOBIOLOGY; HUMAN; HUMAN CELL; ISOMER; LIMIT OF DETECTION; MOLECULAR DYNAMICS; NONHUMAN; PANCREAS CANCER; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; RABBIT; REACTOR MONITORING; SENSITIVITY ANALYSIS;

ANIMALS; CARBOHYDRATE SEQUENCE; CELL LINE, TUMOR; CHROMATOGRAPHY, LIQUID; GLYCOMICS; HUMANS; IONS; ISOMERISM; LIMIT OF DETECTION; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PANCREATIC NEOPLASMS; POLYSACCHARIDES; RABBITS; REFERENCE STANDARDS; REPRODUCIBILITY OF RESULTS; RIBONUCLEASES;

EID: 84865361072     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201100567     Document Type: Article

References (36)

1. Raman, R., Raguram, S., Venkataraman, G., Paulson, J. C. et al., Glycomics: an integrated systems approach to structure-function relationships of glycans. Nat. Methods 2005, 2, 817-824.
2. Shriver, Z., Raguram, S., Sasisekharan, R., Glycomics: a pathway to a class of new and improved therapeutics. Nat. Rev. Drug Discov. 2004, 3, 863-873.
3. Inatani, M., Irie, F., Plump, A. S., Tessier-Lavigne, M. et al., Mammalian brain morphogenesis and midline axon guidance require heparan sulfate. Science 2003, 302, 1044-1046.
4. Haltiwanger, R. S., Lowe, J. B., Role of glycosylation in development. Annu. Rev. Biochem. 2004, 73, 491-537.
5. Sasisekharan, R., Shriver, Z., Venkataraman, G., Narayanasami, U., Roles of heparan-sulphate glycosaminoglycans in cancer. Nat. Rev. Cancer 2002, 2, 521-528.
6. Dube, D. H., Bertozzi, C. R., Glycans in cancer and inflammation-potential for therapeutics and diagnostics. Nat. Rev. Drug Discov. 2005, 4, 477-488.
7. Casu, B., Guerrini, M., Torri, G., Structural and conformational aspects of the anticoagulant and anti-thrombotic activity of heparin and dermatan sulfate. Curr. Pharm. Des. 2004, 10, 939-949.
8. Rudd, P. M., Elliott, T., Cresswell, P., Wilson, I. A. et al., Glycosylation and the immune system. Science 2001, 291, 2370-2376.
9. Parker, R. B., Kohler, J. J., Regulation of intracellular signaling by extracellular glycan remodeling. ACS Chem. Biol. 2010, 5, 35-46.
10. Miller, S. I., Ernst, R. K., Bader, M. W., LPS, TLR4 and infectious disease diversity. Nat. Rev. Microbiol. 2005, 3, 36-46.
11. Krishnamoorthy, L., Mahal, L. K., Glycomic analysis: an array of technologies. ACS Chem. Biol. 2009, 4, 715-732.
12. Turnbull, J. E., Field, R. A., Emerging glycomics technologies. Nat. Chem. Biol. 2007, 3, 74-77.
13. Domann, P. J., Pardos-Pardos, A. C., Fernandes, D. L., Spencer, D. I. et al., Separation-based glycoprofiling approaches using fluorescent labels. Proteomics 2007, 7 (Suppl 1), 70-76.
14. Oyelaran, O., Gildersleeve, J. C., Glycan arrays: recent advances and future challenges. Curr. Opin. Chem. Biol. 2009, 13, 406-413.
15. North, S. J., Hitchen, P. G., Haslam, S. M., Dell, A., Mass spectrometry in the analysis of N-linked and O-linked glycans. Curr. Opin. Struct. Biol. 2009, 19, 498-506.
16. Mechref, Y., Novotny, M. V., Structural investigations of glycoconjugates at high sensitivity. Chem. Rev. 2002, 102, 321-369.
17. Domon, B., Aebersold, R., Options and considerations when selecting a quantitative proteomics strategy. Nat. Biotechnol. 2010, 28, 710-721.
18. Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W. et al., Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. USA 2003, 100, 6940-6945.
19. Anderson, L., Hunter, C. L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell Proteomics 2006, 5, 573-588.
20. Lange, V., Picotti, P., Domon, B., Aebersold, R., Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 2008, 4, 222.
21. Liu, X., Afonso, L., Altman, E., Johnson, S. et al., O-acetylation of sialic acids in N-glycans of Atlantic salmon (Salmo salar) serum is altered by handling stress. Proteomics 2008, 8, 2849-2857.
22. Packer, N. H., Lawson, M. A., Jardine, D. R., Redmond, J. W., A general approach to desalting oligosaccharides released from glycoproteins. Glycoconj. J. 1998, 15, 737-747.
23. Kirmiz, C., Li, B., An, H. J., Clowers, B. H. et al., A serum glycomics approach to breast cancer biomarkers. Mol. Cell. Proteomics 2007, 6, 43-55.
24. Shimizu, Y., Nakata, M., Kuroda, Y., Tsutsumi, F. et al., Rapid and simple preparation of N-linked oligosaccharides by cellulose-column chromatography. Carbohydr. Res. 2001, 332, 381-388.
25. Furukawa, J., Shinohara, Y., Kuramoto, H., Miura, Y. et al., Comprehensive approach to structural and functional glycomics based on chemoselective glycoblotting and sequential tag conversion. Anal. Chem. 2008, 80, 1094-1101.
26. Xia, B., Kawar, Z. S., Ju, T., Alvarez, R. A. et al., Versatile fluorescent derivatization of glycans for glycomic analysis. Nat. Methods 2005, 2, 845-850.
27. Pabst, M., Kolarich, D., Pöltl, G., Dalik, T. et al., Comparison of fluorescent labels for oligosaccharides and introduction of a new postlabeling purification method. Anal. Biochem. 2009, 384, 263-273.
28. Xia, B., Feasley, C. L., Sachdev, G. P., Smith, D. F. et al., Glycan reductive isotope labeling for quantitative glycomics. Anal. Biochem. 2009, 387, 162-170.
29. Yoshino, K., Takao, T., Murata, H., Shimonishi, Y., Use of the derivatizing agent 4-aminobenzoic acid 2-(diethylamino)ethyl ester for high-sensitivity detection of oligosaccharides by electrospray ionization mass spectrometry. Anal. Chem. 1995, 67, 4028-4031.
30. Prien, J. M., Ashline, D. J., Lapadula, A. J., Zhang, H. et al., The high mannose glycans from bovine ribonuclease B isomer characterization by ion trap MS. J. Am. Soc. Mass Spectrom. 2009, 20, 539-556.
31. Prien, J. M., Prater, B. D., Cockrill, S. L., A multi-method approach toward de novo glycan characterization: a Man-5 case study. Glycobiology 2010, 20, 629-647.
32. Pabst, M., Bondili, J. S., Stadlmann, J., Mach, L. et al., Mass + retention time = structure: a strategy for the analysis of N-glycans by carbon LC-ESI-MS and its application to fibrin N-glycans. Anal. Chem. 2007, 79, 5051-5057.
33. Naka, R., Kamoda, S., Ishizuka, A., Kinoshita, M. et al., Analysis of total N-glycans in cell membrane fractions of cancer cells using a combination of serotonin affinity chromatography and normal phase chromatography. J. Proteome Res. 2006, 5, 88-97
34. Vercoutter-Edouart, A. S., Slomianny, M. C., Dekeyzer-Beseme, O., Haeuw, J. F. et al., Glycoproteomics and glycomics investigation of membrane N-glycosylproteins from human colon carcinoma cells. Proteomics 2008, 8, 3236-3256.
35. Lattová, E., Tomanek, B., Bartusik, D., Perreault, H., N-glycomic changes in human breast carcinoma MCF-7 and T-lymphoblastoid cells after treatment with herceptin and herceptin/Lipoplex. J. Proteome Res. 2010, 9, 1533-1540.
36. Vanhooren, V., Dewaele, S., Kuro-O, M., Taniguchi, N. et al., Alteration in N-glycomics during mouse aging: a role for FUT8. Aging Cell 2011, 10, 1056-1066.