Expression of cassini, a murine gamma-satellite sequence conserved in evolution, is regulated in normal and malignant hematopoietic cells

BMC Genomics

Volumn 13, Issue 1, 2012, Pages

  Arutyunyan, Anna ^a   Stoddart, Sonia ^a   Yi, Sun ju ^a   Fei, Fei ^a   Lim, Min ^a   Groffen, Paula ^b   Feldhahn, Niklas ^a,c   Groffen, John ^a,d   Heisterkamp, Nora ^a,d  

^a CHILDREN S HOSPITAL LOS ANGELES   (United States)

^b UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

^c ROCKEFELLER UNIVERSITY   (United States)

^d UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

Acute lymphoblastic leukemia; Cytotoxic drugs; Major mouse satellite; MEFs; Murine satellite DNA; Nilotinib; Pericentromeric; Stress

Indexed keywords

COMPLEMENTARY DNA; ENDOTOXIN; NILOTINIB; RNA; VINCRISTINE;

ACUTE LYMPHOBLASTIC LEUKEMIA; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CASSINI GENE; CELL STRESS; CHROMOSOMAL LOCALIZATION; CHROMOSOME 9; CONTROLLED STUDY; DNA SEQUENCE; DRUG CYTOTOXICITY; EMBRYO; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE OVEREXPRESSION; GENETIC CONSERVATION; HUMAN; HUMAN CELL; LEUKEMIA CELL LINE; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; RNA ANALYSIS; SEQUENCE HOMOLOGY; STROMA CELL; TISSUE SPECIFICITY; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

ANIMALS; ANTINEOPLASTIC AGENTS, PHYTOGENIC; APICOMPLEXA; BIOLOGICAL EVOLUTION; CELL LINE, TUMOR; COCULTURE TECHNIQUES; DATABASES, GENETIC; ENDOTOXINS; FIBROBLASTS; GENE EXPRESSION PROFILING; GENETIC LOCI; HEK293 CELLS; HUMANS; MICE; MICE, TRANSGENIC; PLATYHELMINTHS; PRECURSOR CELL LYMPHOBLASTIC LEUKEMIA-LYMPHOMA; PRECURSOR CELLS, B-LYMPHOID; PRIMATES; PROTEINS; PYRIMIDINES; RNA; TEMPERATURE; TRANSFECTION; UP-REGULATION; VINCRISTINE;

APICOMPLEXA; BACTERIA (MICROORGANISMS); MURINAE; MUS; PLATYHELMINTHES; PRIMATES; RODENTIA;

EID: 84865270562     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-418     Document Type: Article

References (25)

1. Kumagai M, Manabe A, Pui CH, Behm FG, Raimondi SC, Hancock ML, Mahmoud H, Crist WM, Campana D. Stroma-supported culture in childhood B-lineage acute lymphoblastic leukemia cells predicts treatment outcome. J Clin Invest 1996, 97:755-760. 10.1172/JCI118474, 507113, 8609232.
2. Heisterkamp N, Jenster G, ten Hoeve J, Zovich D, Pattengale PK, Groffen J. Acute leukemia in BCR/ABL transgenic mice. Nature 1990, 344:251-254. 10.1038/344251a0, 2179728.
3. Kaur P, Feldhahn N, Zhang B, Trageser D, Muschen M, Pertz V, Groffen J, Heisterkamp N. Nilotinib treatment in mouse models of P190 Bcr/Abl lymphoblastic leukemia. Mol Cancer 2007, 25:67-77.
4. Mishra S, Zhang B, Cunnick J, Heisterkamp N, Groffen J. Resistance to Imatinib of Bcr/Abl P190 lymphoblastic leukemia cells. Cancer Res 2006, 66:5387-5393. 10.1158/0008-5472.CAN-05-3058, 16707466.
5. Zhang B, Groffen J, Heisterkamp N. Increased resistance to a farnesyltransferase inhibitor by N-cadherin expression in Bcr/Abl-P190 lymphoblastic leukemia cells. Leukemia 2007, 2007(21):1189-1197.
6. Mishra S, Pertz V, Zhang B, Kaur P, Shimada H, Groffen J, Kazimierczuk Z, Pinna LA, Heisterkamp N. Treatment of P190 Bcr/Abl lymphoblastic leukemia cells with inhibitors of the serine/threonine kinase CK2. Leukemia 2007, 21:178-180. 10.1038/sj.leu.2404460, 17082777.
7. Fei F, Stoddart S, Groffen J, Heisterkamp N. Activity of the Aurora Kinase inhibitor VX-680 against Bcr/Abl positive acute lymphoblastic leukemias. Mol Cancer Therap 2010, 9:1318-1327.
8. Fei F, Stoddart S, Müschen M, Kim Y-M, Groffen J, Heisterkamp N. Development of resistance to dasatinib in Bcr/Abl-positive acute lymphoblastic leukemia. Leukemia 2010, 24:813-820. 10.1038/leu.2009.302, 3038787, 20111071.
9. Wang L, Fortney JE, Gibson LF. Stromal cell protection of B-lineage acute lymphoblastic leukemic cells during chemotherapy requires active Akt. Leuk Res 2004, 28:733-742. 10.1016/j.leukres.2003.10.033, 15158095.
10. Gaundar SS, Bradstock KF, Bendall LJ. p38MAPK inhibitors attenuate cytokine production by bone marrow stromal cells and reduce stroma-mediated proliferation of acute lymphoblastic leukemia cells. Cell Cycle 2009, 8:2975-2983.
11. Hörz W, Altenburger W. Nucleotide sequence of mouse satellite DNA. Nucleic Acids Res 1981, 9:683-696. 10.1093/nar/9.3.683, 327230, 6261227.
12. Vissel B, Choo KH. Mouse major (gamma) satellite DNA is highly conserved and organized into extremely long tandem arrays: implications for recombination between nonhomologous chromosomes. Genomics 1989, 5:407-414. 10.1016/0888-7543(89)90003-7, 2613229.
13. Eymery A, Horard B, El Atifi-Borel M, Fourel G, Berger F, Vitte AL, Van den Broeck A, Brambilla E, Fournier A, Callanan M, et al. A transcriptomic analysis of human centromeric and pericentric sequences in normal and tumor cells. Nucleic Acids Res 2009, 37:6340-6354. 10.1093/nar/gkp639, 2770647, 19720732.
14. Ugarkovic D. Functional elements residing within satellite DNAs. EMBO Rep 2005, 6:1035-1039. 10.1038/sj.embor.7400558, 1371040, 16264428.
15. Vourc'h C, Biamonti G. Transcription of Satellite DNAs in Mammals. Prog Mol Subcell Biol 2011, 51:95-118. 10.1007/978-3-642-16502-3_5, 21287135.
16. Gaubatz JW, Cutler RG. Mouse satellite DNA is transcribed in senescent cardiac muscle. J Biol Chem 1990, 265:17753-17758.
17. Lu J, Gilbert DM. Proliferation-dependent and cell cycle regulated transcription of mouse pericentric heterochromatin. J Cell Biol 2007, 179:411-421. Erratum in: J Cell Biol. 2008.181: 171, 10.1083/jcb.200706176, 2064789, 17984319.
18. Murre C. Developmental trajectories in early hematopoiesis. Genes Dev 2009, 23:2366-2370. 10.1101/gad.1861709, 2764501, 19833763.
19. Shestakova EA, Mansuroglu Z, Mokrani H, Ghinea N, Bonnefoy E. Transcription factor YY1 associates with pericentromeric gamma-satellite DNA in cycling but not in quiescent (G0) cells. Nucleic Acids Res 2004, 32:4390-4399. 10.1093/nar/gkh737, 514366, 15316102.
20. Kim JH, Ebersole T, Kouprina N, Noskov VN, Ohzeki J, Masumoto H, Mravinac B, Sullivan BA, Pavlicek A, Dovat S, et al. Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing. Genome Res 2009, 19:533-544. 10.1101/gr.086496.108, 2665773, 19141594.
21. Vassen L, Fiolka K, Möröy T. Gfi1b alters histone methylation at target gene promoters and sites of gamma-satellite containing heterochromatin. EMBO J 2006, 25:2409-2419. 10.1038/sj.emboj.7601124, 1478184, 16688220.
22. van der Meer LT, Jansen JH, van der Reijden BA. Gfi1 and Gfi1b: key regulators of hematopoiesis. Leukemia 2010, 24:1834-1843. 10.1038/leu.2010.195, 20861919.
23. Liu H, Schmidt-Supprian M, Shi Y, Hobeika E, Barteneva N, Jumaa H, Pelanda R, Reth M, Skok J, Rajewsky K, et al. Yin Yang 1 is a critical regulator of B-cell development. Genes Dev 2007, 21:1179-1189. 10.1101/gad.1529307, 1865490, 17504937.
24. Parameswaran R, Müschen M, Kim YM, Groffen J, Heisterkamp N. A functional receptor for B-cell-activating factor is expressed on human acute lymphoblastic leukemias. Cancer Res 2010, 70:4346-4356. 10.1158/0008-5472.CAN-10-0300, 2880197, 20460528.
25. Behan JW, Yun JP, Proektor MP, Ehsanipour EA, Arutyunyan A, Moses AS, Avramis VI, Louie SG, Butturini A, Heisterkamp N, et al. Adipocytes impair leukemia treatment in mice. Cancer Res 2009, 69:7867-7874. 10.1158/0008-5472.CAN-09-0800, 2756308, 19773440.