메뉴 건너뛰기




Volumn 105, Issue 4, 2012, Pages 1432-1438

Validation of reference genes for gene expression studies in aphis glycines (hemiptera: Aphididae)

Author keywords

Aphis glycines; housekeeping gene; normalization; quantitative real time polymerase chain reaction

Indexed keywords

ELONGATION FACTOR 1; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; INSECT PROTEIN; RIBOSOMAL PROTEIN S9; RIBOSOME PROTEIN; TATA BINDING PROTEIN; UBIQUITIN CONJUGATING ENZYME;

EID: 84865202759     PISSN: 00220493     EISSN: None     Source Type: Journal    
DOI: 10.1603/EC12095     Document Type: Article
Times cited : (58)

References (34)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCRdata: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen, C. L., J. L. Jensen, and T. F. Orntoft. 2004. Normalization of real-time quantitative reverse transcription-PCRdata: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 64: 5245-5250.
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 2
    • 77955323587 scopus 로고    scopus 로고
    • Combining next-generation sequencing strategies for rapid molecular resource development from an invasive aphid species, Aphis glycines
    • doi: 10.1371/journal.pone.0011370
    • Bai, X.,W.Zhang, L. Orantes, T. H. Jun, O. Mittapalli, M.A.R. Mian, and A. M. Michel. 2010. Combining next-generation sequencing strategies for rapid molecular resource development from an invasive aphid species, Aphis glycines. PLoS ONE 5(6): e11370. (doi: 10.1371/journal.pone.0011370).
    • (2010) PLoS ONE , vol.5 , Issue.6
    • Bai, X.1    Zhang, W.2    Orantes, L.3    Jun, T.H.4    Mittapalli, O.5    Mian, M.A.R.6    Michel, A.M.7
  • 3
    • 80051690995 scopus 로고    scopus 로고
    • Hessian fly-associated bacteria: Transmission essentiality and composition
    • doi: 10.1371/journal.pone.0023170
    • Bansal, R., S. Hulbert, B. Schemerhorn, J. C. Reese, R. J. Whitworth, J. J. Stuart, and M. S. Chen. 2011. Hessian fly-associated bacteria: transmission, essentiality, and composition. PLoS ONE 6(8): e23170. (doi: 10.1371/journal. pone.0023170).
    • (2011) PLoS ONE , vol.6 , Issue.8
    • Bansal, R.1    Hulbert, S.2    Schemerhorn, B.3    Reese, J.C.4    Whitworth, R.J.5    Stuart, J.J.6    Chen, M.S.7
  • 4
    • 77956767010 scopus 로고    scopus 로고
    • Developments in real-time PCR research and molecular diagnostics
    • Bustin, S. A. 2010. Developments in real-time PCR research and molecular diagnostics. Expert Rev. Mol. Diagn. 10: 713-715.
    • (2010) Expert Rev. Mol. Diagn. , vol.10 , pp. 713-715
    • Bustin, S.A.1
  • 5
    • 0035931097 scopus 로고    scopus 로고
    • Further defining housekeeping, or "maintenance," genes focus on "a compendium of gene expression in normal human tissues"
    • Butte, A. J., V. J. Dzau, and S. B. Glueck. 2001. Further defining housekeeping, or "maintenance," genes focus on "a compendium of gene expression in normal human tissues". Physiol. Genomics 7: 95-96.
    • (2001) Physiol. Genomics , vol.7 , pp. 95-96
    • Butte, A.J.1    Dzau, V.J.2    Glueck, S.B.3
  • 6
    • 43949138227 scopus 로고    scopus 로고
    • Blast2GO: A comprehensive suite for functional analysis in plant genomics
    • Conesa, A., and S. Gö tz. 2008. Blast2GO: a comprehensive suite for functional analysis in plant genomics. Int. J. Plant Genomics 2008: 1-13.
    • (2008) Int. J. Plant Genomics , vol.2008 , pp. 1-13
    • Conesa, A.1    Götz, S.2
  • 7
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A., S. Gö tz, J. M. Garcia-Gomez, J. Terol, M. Talon, and M. Robles. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 8
    • 67650917116 scopus 로고    scopus 로고
    • Reference genes for QRT-PCR tested under various stress conditions in Folsomia candida and Orchesella cincta (Insecta, Collembola)
    • de Boer, M., T. de Boer, J. Marien, M. Timmermans, B. Nota, N. van Straalen, J. Ellers, and D. Roelofs. 2009. Reference genes for QRT-PCR tested under various stress conditions in Folsomia candida and Orchesella cincta (Insecta, Collembola). BMC Mol. Biol. 10: 54.
    • (2009) BMC Mol. Biol. , vol.10 , pp. 54
    • De Boer, M.1    De Boer, T.2    Marien, J.3    Timmermans, M.4    Nota, B.5    Van Straalen, N.6    Ellers, J.7    Roelofs, D.8
  • 12
    • 47249141242 scopus 로고    scopus 로고
    • The lack of a systematic validation of reference genes: A serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants
    • Gutierrez, L., M. Mauriat, S. Guenin, J. Pelloux, J. F. Lefevre, R. Lovet, C. Rusterucci, T. Moritz, F. Guerineau, C. Bellini, et al. 2008. The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnol. J. 6: 609-618.
    • (2008) Plant Biotechnol. J. , vol.6 , pp. 609-618
    • Gutierrez, L.1    Mauriat, M.2    Guenin, S.3    Pelloux, J.4    Lefevre, J.F.5    Lovet, R.6    Rusterucci, C.7    Moritz, T.8    Guerineau, F.9    Bellini, C.10
  • 14
    • 67649439170 scopus 로고    scopus 로고
    • Identification and validation of housekeeping genes in brains of the desert locust Schistocerca gregaria under different developmental conditions
    • Hiel, M.B.V., P. V. Wielendaele, L. Temmerman, S. V. Soest, K. Vuerinckx, R. Huybrechts, J. V. Broeck, and G. Simonet. 2009. Identification and validation of housekeeping genes in brains of the desert locust Schistocerca gregaria under different developmental conditions. BMC Mol Biol. 10: 56.
    • (2009) BMC Mol Biol. , vol.10 , pp. 56
    • Hiel, M.B.V.1    Wielendaele, P.V.2    Temmerman, L.3    Soest, S.V.4    Vuerinckx, K.5    Huybrechts, R.6    Broeck, J.V.7    Simonet, G.8
  • 15
    • 0347659057 scopus 로고    scopus 로고
    • Resistance to the soybean aphid in soybean germplasm
    • Hill, C. B., Y. Li, and G. L. Hartman. 2004. Resistance to the soybean aphid in soybean germplasm. Crop Sci. 44: 98-106.
    • (2004) Crop Sci. , vol.44 , pp. 98-106
    • Hill, C.B.1    Li, Y.2    Hartman, G.L.3
  • 17
    • 71749096010 scopus 로고    scopus 로고
    • Selection of reference genes for real-time polymerase chain reaction analysis in tissues from Bombus terrestris and Bombus lucorum of different ages
    • Hornakova, D., P. Matouskova, J. Kindl, I. Valterova, and I. Pichova. 2010. Selection of reference genes for real-time polymerase chain reaction analysis in tissues from Bombus terrestris and Bombus lucorum of different ages. Anal Biochem. 397: 118-120.
    • (2010) Anal Biochem. , vol.397 , pp. 118-120
    • Hornakova, D.1    Matouskova, P.2    Kindl, J.3    Valterova, I.4    Pichova, I.5
  • 18
    • 77950883616 scopus 로고    scopus 로고
    • Validation of endogenous reference genes for insecticide-induced and developmental expression profiling of Liposcelis bostsrychophila (Psocoptera: Liposcelidae)
    • Jiang, H., Y. Liu, P. Tang, A. Zhou, and J. Wang. 2010. Validation of endogenous reference genes for insecticide-induced and developmental expression profiling of Liposcelis bostsrychophila (Psocoptera: Liposcelidae). Mol. Biol. Rep. 37: 1019-1029.
    • (2010) Mol. Biol. Rep. , vol.37 , pp. 1019-1029
    • Jiang, H.1    Liu, Y.2    Tang, P.3    Zhou, A.4    Wang, J.5
  • 19
    • 34447300959 scopus 로고    scopus 로고
    • In search of suitable reference genes for gene expression studies of human renal cell carcinoma by real-time PCR
    • Jung, M., A. Ramankulov, J. Roigas, M. Johannsen, M. Ringsdorf, G. Kristiansen, and K. Jung. 2007. In search of suitable reference genes for gene expression studies of human renal cell carcinoma by real-time PCR. BMC Mol. Biol. 8: 47.
    • (2007) BMC Mol. Biol. , vol.8 , pp. 47
    • Jung, M.1    Ramankulov, A.2    Roigas, J.3    Johannsen, M.4    Ringsdorf, M.5    Kristiansen, G.6    Jung, K.7
  • 21
    • 82155186096 scopus 로고    scopus 로고
    • Identification of superior reference genes for data normalisation of expression studies via quantitative PCR in hybrid roses (Rosa hybrida)
    • Klie, M., and T. Debener. 2011. Identification of superior reference genes for data normalisation of expression studies via quantitative PCR in hybrid roses (Rosa hybrida). BMC Res. Notes 4: 518.
    • (2011) BMC Res. Notes , vol.4 , pp. 518
    • Klie, M.1    Debener, T.2
  • 22
    • 74449086131 scopus 로고    scopus 로고
    • Evaluation of quantitative PCR reference genes for gene expression studies in Tribolium castaneum after fungal challenge
    • Lord, J. C., K. Hartzer, M. Toutges, and B. Oppert. 2010. Evaluation of quantitative PCR reference genes for gene expression studies in Tribolium castaneum after fungal challenge. J. Microb. Methods 80: 219-221.
    • (2010) J. Microb. Methods , vol.80 , pp. 219-221
    • Lord, J.C.1    Hartzer, K.2    Toutges, M.3    Oppert, B.4
  • 23
    • 79960536500 scopus 로고    scopus 로고
    • Identification and validation of reference genes for quantitative real-time PCR in the bed bug
    • Mamidala, P., S. P. Rajarapu, S. C. Jones, and O. Mittapalli. 2011. Identification and validation of reference genes for quantitative real-time PCR in the bed bug. J. Med. Entomol. 48: 947-951.
    • (2011) J. Med. Entomol. , vol.48 , pp. 947-951
    • Mamidala, P.1    Rajarapu, S.P.2    Jones, S.C.3    Mittapalli, O.4
  • 24
    • 34948893564 scopus 로고    scopus 로고
    • Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
    • Nygard, A. B., C. B. Jorgensen, S. Cirera, and M. Fredholm, M. 2007. Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR. BMC Mol. Biol. 8: 67.
    • (2007) BMC Mol. Biol. , vol.8 , pp. 67
    • Nygard, A.B.1    Jorgensen, C.B.2    Cirera, S.3    Fredholm M, M.4
  • 25
    • 15544374615 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections
    • Radonic, A., S. Thulke, H. G. Bae, M. A. Muller, W. Siegert, and A. Nitsche. 2005. Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections. Virol. J. 2: 7.
    • (2005) Virol. J. , vol.2 , pp. 7
    • Radonic, A.1    Thulke, S.2    Bae, H.G.3    Muller, M.A.4    Siegert, W.5    Nitsche, A.6
  • 27
    • 84856423281 scopus 로고    scopus 로고
    • Validation of reference genes for gene expression studies in emerald ash borer (Agrilus planipennis)
    • Rajarapu, S. P., P. Mamidala, and O. Mittapalli. 2011. Validation of reference genes for gene expression studies in emerald ash borer (Agrilus planipennis). Insect Sci. 19: 41-46.
    • (2011) Insect Sci. , vol.19 , pp. 41-46
    • Rajarapu, S.P.1    Mamidala, P.2    Mittapalli, O.3
  • 28
    • 43449117490 scopus 로고    scopus 로고
    • Reference gene selection for insect expression studies using quantitative realtime PCR: The head of the honeybee, Apis mellifera, after a bacterial challenge
    • Scharlaken, B., D. C. de Graaf, K. Goossens, M. Brunain, L. J. Peelman, and F. J. Jacobs. 2008. Reference gene selection for insect expression studies using quantitative realtime PCR: the head of the honeybee, Apis mellifera, after a bacterial challenge. J. Insect Sci. 8: 33.
    • (2008) J. Insect Sci. , vol.8 , pp. 33
    • Scharlaken, B.1    De Graaf, D.C.2    Goossens, K.3    Brunain, M.4    Peelman, L.J.5    Jacobs, F.J.6
  • 29
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative CT method
    • Schmittgen, T. D., and K. J. Livak. 2008. Analyzing real-time PCR data by the comparative CT method. Nat. Protoc. 3: 1101-1118.
    • (2008) Nat. Protoc. , vol.3 , pp. 1101-1118
    • Schmittgen, T.D.1    Livak, K.J.2
  • 30
    • 72449190157 scopus 로고    scopus 로고
    • Returns to integrated pest management research and outreach for soybean aphid
    • Song, F., and S. M. Swinton. 2009. Returns to integrated pest management research and outreach for soybean aphid. J. Econ. Entomol. 102: 2116-2125.
    • (2009) J. Econ. Entomol. , vol.102 , pp. 2116-2125
    • Song, F.1    Swinton, S.M.2
  • 31
    • 84946148649 scopus 로고    scopus 로고
    • Biology of the soybean aphid, Aphis glycines (Hemiptera: Aphididae) in the United States
    • doi:
    • Tilmon, K. J., E. W. Hodgson, M. E. O'Neal, and D. W. Ragsdale. 2011. Biology of the soybean aphid, Aphis glycines (Hemiptera: Aphididae) in the United States. J. Integr. Pest Manag. 2(2). (doi: http://dx.doi.org/10.1603/ IPM10016).
    • (2011) J. Integr. Pest Manag. , vol.2 , Issue.2
    • Tilmon, K.J.1    Hodgson, E.W.2    O'Neal, M.E.3    Ragsdale, D.W.4
  • 32
    • 84859630600 scopus 로고    scopus 로고
    • Field-level effects of preventative management tactics on soybean aphids (Aphis glycines Matsumura) and their predators
    • Tinsley, N. A., K. L. Steffey, R. E. Estes, J. R. Heeren, M. E. Gray, and B. W. Diers. 2012. Field-level effects of preventative management tactics on soybean aphids (Aphis glycines Matsumura) and their predators. J. Appl. Entomol. 136: 361-371.
    • (2012) J. Appl. Entomol. , vol.136 , pp. 361-371
    • Tinsley, N.A.1    Steffey, K.L.2    Estes, R.E.3    Heeren, J.R.4    Gray, M.E.5    Diers, B.W.6
  • 33
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034.1-0034.11
    • Vandesompele, J., K. D. Preter, F. Pattyn, B. Poppe, N. V. Roy, A. D. Paepe, and F. Speleman. 2002. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3: research0034.1-0034.11.
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    Preter, K.D.2    Pattyn, F.3    Poppe, B.4    Roy, N.V.5    Paepe, A.D.6    Speleman, F.7
  • 34
    • 24944534978 scopus 로고    scopus 로고
    • Real-time PCR for mRNA quantitation
    • Wong, M. L., and J. F. Medrano. 2005. Real-time PCR for mRNA quantitation. Biotechniques 39: 75-85.
    • (2005) Biotechniques , vol.39 , pp. 75-85
    • Wong, M.L.1    Medrano, J.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.