메뉴 건너뛰기




Volumn 4, Issue , 2011, Pages

Identification of superior reference genes for data normalisation of expression studies via quantitative PCR in hybrid roses (Rosa hybrida)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; ROSA; ROSA HYBRID CULTIVAR;

EID: 82155186096     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-4-518     Document Type: Article
Times cited : (100)

References (39)
  • 1
    • 70449426685 scopus 로고    scopus 로고
    • International statistics flowers and plants
    • International statistics flowers and plants. Heinrichs F, AIPH/Union Fleurs 2008 16 90
    • (2008) AIPH/Union Fleurs , pp. 16-90
    • Heinrichs, F.1
  • 3
    • 77953139754 scopus 로고    scopus 로고
    • Genetic dissection of scent metabolic profiles in diploid rose populations
    • 10.1007/s00122-010-1268-y 20084491
    • Genetic dissection of scent metabolic profiles in diploid rose populations. Spiller M, Berger RG, Debener T, Theor Appl Genet 2010 120 1461 1471 10.1007/s00122-010-1268-y 20084491
    • (2010) Theor Appl Genet , vol.120 , pp. 1461-1471
    • Spiller, M.1    Berger, R.G.2    Debener, T.3
  • 4
    • 0004216271 scopus 로고    scopus 로고
    • Compendium of rose diseases and pests: American Phytopathological Society
    • Compendium of rose diseases and pests: American Phytopathological Society. Horst RK, Cloyd RA, [Disease compendium series] 2007
    • (2007) Disease Compendium Series
    • Horst, R.K.1    Cloyd, R.A.2
  • 5
    • 76049122844 scopus 로고    scopus 로고
    • Molecular markers from a BAC contig spanning the Rdr1 locus: A tool for marker-assisted selection in roses
    • 10.1007/s00122-009-1197-9 19911159
    • Molecular markers from a BAC contig spanning the Rdr1 locus: a tool for marker-assisted selection in roses. Biber A, Kaufmann H, Linde M, Spiller M, Terefe D, Debener T, Theor Appl Genet 2010 120 765 773 10.1007/s00122-009-1197-9 19911159
    • (2010) Theor Appl Genet , vol.120 , pp. 765-773
    • Biber, A.1    Kaufmann, H.2    Linde, M.3    Spiller, M.4    Terefe, D.5    Debener, T.6
  • 6
    • 77649235913 scopus 로고    scopus 로고
    • How to do successful gene expression analysis using real-time PCR
    • 10.1016/j.ymeth.2009.11.001 19969088
    • How to do successful gene expression analysis using real-time PCR. Derveaux S, Vandesompele J, Hellemans J, Methods 2010 50 227 230 10.1016/j.ymeth.2009.11.001 19969088
    • (2010) Methods , vol.50 , pp. 227-230
    • Derveaux, S.1    Vandesompele, J.2    Hellemans, J.3
  • 8
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • ESEARCH0034 12184808
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. van Vandesompele J, Preter K, Pattyn F, Poppe B, Roy N, Paepe A, Speleman F, Genome Biol 2002 3 ESEARCH0034 12184808
    • (2002) Genome Biol , vol.3
    • Van Vandesompele, J.1    Preter, K.2    Pattyn, F.3    Poppe, B.4    Roy, N.5    Paepe, A.6    Speleman, F.7
  • 9
    • 0141941592 scopus 로고    scopus 로고
    • Heat-stress-dependency and developmental modulation of gene expression: The potential of house-keeping genes as internal standards in mRNA expression profiling using real-time RT-PCR
    • DOI 10.1093/jxb/erg244
    • Heat-stress-dependency and developmental modulation of gene expression: the potential of house-keeping genes as internal standards in mRNA expression profiling using real-time RT-PCR. Volkov RA, Panchuk II, Schoffl F, J Exp Bot 2003 54 2343 2349 10.1093/jxb/erg244 14504302 (Pubitemid 37231971)
    • (2003) Journal of Experimental Botany , vol.54 , Issue.391 , pp. 2343-2349
    • Volkov, R.A.1    Panchuk, I.I.2    Schoffl, F.3
  • 10
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in arabidopsis
    • DOI 10.1104/pp.105.063743
    • Genome-wide identification and testing of superior reference genes for transcript normalization in arabidopsis. Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible W-R, Plant Physiol 2005 139 5 17 10.1104/pp.105.063743 16166256 (Pubitemid 43951587)
    • (2005) Plant Physiology , vol.139 , Issue.1 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.-R.5
  • 11
    • 77952553024 scopus 로고    scopus 로고
    • Evaluation of candidate reference genes for expression studies in Pisum sativum under different experimental conditions
    • 10.1007/s00425-010-1158-1 20379832
    • Evaluation of candidate reference genes for expression studies in Pisum sativum under different experimental conditions. Die JV, Roman B, Nadal S, Gonzalez-Verdejo CI, Planta 2010 232 145 153 10.1007/s00425-010-1158-1 20379832
    • (2010) Planta , vol.232 , pp. 145-153
    • Die, J.V.1    Roman, B.2    Nadal, S.3    Gonzalez-Verdejo, C.I.4
  • 13
    • 64549093259 scopus 로고    scopus 로고
    • Identification and validation of reference genes for quantitative RT-PCR normalization in wheat
    • Identification and validation of reference genes for quantitative RT-PCR normalization in wheat. Paolacci AR, Tanzarella OA, Porceddu E, Ciaffi M, BMC Mol Biol 2009 10
    • (2009) BMC Mol Biol , vol.10
    • Paolacci, A.R.1    Tanzarella, O.A.2    Porceddu, E.3    Ciaffi, M.4
  • 14
    • 33847321126 scopus 로고    scopus 로고
    • A combined strategy of "in silico" transcriptome analysis and web search engine optimization allows an agile identification of reference genes suitable for normalization in gene expression studies
    • 10.1007/s11103-006-9116-9 17143578
    • A combined strategy of "in silico" transcriptome analysis and web search engine optimization allows an agile identification of reference genes suitable for normalization in gene expression studies. Faccioli P, Ciceri GP, Provero P, Stanca AM, Morcia C, Terzi V, Plant Mol Biol 2007 63 679 688 10.1007/s11103-006-9116-9 17143578
    • (2007) Plant Mol Biol , vol.63 , pp. 679-688
    • Faccioli, P.1    Ciceri, G.P.2    Provero, P.3    Stanca, A.M.4    Morcia, C.5    Terzi, V.6
  • 15
    • 58549086530 scopus 로고    scopus 로고
    • Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process
    • Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process. Exposito-Rodriguez M, Borges AA, Borges-Perez A, Perez JA, BMC Plant Biol 2008 8
    • (2008) BMC Plant Biol , vol.8
    • Exposito-Rodriguez, M.1    Borges, A.A.2    Borges-Perez, A.3    Perez, J.A.4
  • 16
    • 61849089336 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress
    • 10.1016/j.ab.2009.01.024 19454243
    • Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress. Lovdal T, Lillo C, Anal Biochem 2009 387 238 242 10.1016/j.ab.2009.01.024 19454243
    • (2009) Anal Biochem , vol.387 , pp. 238-242
    • Lovdal, T.1    Lillo, C.2
  • 17
    • 67650930085 scopus 로고    scopus 로고
    • Normalization of qRT-PCR data: The necessity of adopting a systematic, experimental conditions-specific, validation of references
    • 10.1093/jxb/ern305 19264760
    • Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. Guénin S, Mauriat M, Pelloux J, van Wuytswinkel O, Bellini C, Gutierrez L, J Exp Bot 2009 60 487 493 10.1093/jxb/ern305 19264760
    • (2009) J Exp Bot , vol.60 , pp. 487-493
    • Guénin, S.1    Mauriat, M.2    Pelloux, J.3    Van Wuytswinkel, O.4    Bellini, C.5    Gutierrez, L.6
  • 18
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • DOI 10.1023/B:BILE.0000019559.84305.47
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: bestKeeper - excel-based tool using pair-wise correlations. Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP, Biotechnol Lett 2004 26 509 515 15127793 (Pubitemid 38448421)
    • (2004) Biotechnology Letters , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 19
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • DOI 10.1158/0008-5472.CAN-04-0496
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Andersen CL, Jensen JL, rntoft TF, Cancer Res 2004 64 5245 5250 10.1158/0008-5472.CAN-04-0496 15289330 (Pubitemid 39006544)
    • (2004) Cancer Research , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 20
    • 3142615272 scopus 로고    scopus 로고
    • Validation of housekeeping genes for normalizing RNA expression in real-time PCR
    • Validation of housekeeping genes for normalizing RNA expression in real-time PCR. Dheda K, Huggett JF, Bustin SA, Johnson MA, Rook G, Zumla A, BioTechniques 2004 37 112 119 15283208 (Pubitemid 38902668)
    • (2004) BioTechniques , vol.37 , Issue.1 , pp. 112-119
    • Dheda, K.1    Huggett, J.F.2    Bustin, S.A.3    Johnson, M.A.4    Rook, G.5    Zumla, A.6
  • 21
    • 27144456802 scopus 로고    scopus 로고
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
    • DOI 10.1093/jxb/eri285
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. Nicot N, Hausman J, Hoffmann L, Evers D, J Exp Bot 2005 56 2907 2914 10.1093/jxb/eri285 16188960 (Pubitemid 41507227)
    • (2005) Journal of Experimental Botany , vol.56 , Issue.421 , pp. 2907-2914
    • Nicot, N.1    Hausman, J.-F.2    Hoffmann, L.3    Evers, D.4
  • 22
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. Reid KE, Olsson N, Schlosser J, Peng F, Lund ST, BMC Plant Biol 2006 6
    • (2006) BMC Plant Biol , vol.6
    • Reid, K.E.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.T.5
  • 23
    • 34548034236 scopus 로고    scopus 로고
    • De-regulation of common housekeeping genes in hepatocellular carcinoma
    • 10.1186/1471-2164-8-243 17640361
    • De-regulation of common housekeeping genes in hepatocellular carcinoma. Waxman S, Wurmbach E, BMC Genomics 2007 8 243 10.1186/1471-2164-8-243 17640361
    • (2007) BMC Genomics , vol.8 , pp. 243
    • Waxman, S.1    Wurmbach, E.2
  • 25
    • 56049107635 scopus 로고    scopus 로고
    • Isolation of an Ethylene-induced Putative Nucleotide Laccase in Miniature Roses (Rosa hybrida L.)
    • 10.1007/s00344-008-9059-2
    • Isolation of an Ethylene-induced Putative Nucleotide Laccase in Miniature Roses (Rosa hybrida L.). Ahmadi N, Mibus H, Serek M, J Plant Growth Reg 2008 27 320 330 10.1007/s00344-008-9059-2
    • (2008) J Plant Growth Reg , vol.27 , pp. 320-330
    • Ahmadi, N.1    Mibus, H.2    Serek, M.3
  • 26
    • 69249212286 scopus 로고    scopus 로고
    • A survey of flowering genes reveals the role of gibberellins in floral control in rose
    • 10.1007/s00122-009-1087-1
    • A survey of flowering genes reveals the role of gibberellins in floral control in rose. Remay A, Lalanne D, Thouroude T, Le Couviour F, Hibrand-Saint Oyant L, Foucher F, Theor Appl Gen 2009 119 767 781 10.1007/s00122-009-1087-1
    • (2009) Theor Appl Gen , vol.119 , pp. 767-781
    • Remay, A.1    Lalanne, D.2    Thouroude, T.3    Le Couviour, F.4    Hibrand-Saint Oyant, L.5    Foucher, F.6
  • 27
    • 77950476641 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida
    • Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida. Mallona I, Lischewski S, Weiss J, Hause B, Egea-Cortines M, BMC Plant Biology 2010 10
    • (2010) BMC Plant Biology , vol.10
    • Mallona, I.1    Lischewski, S.2    Weiss, J.3    Hause, B.4    Egea-Cortines, M.5
  • 29
    • 65249115735 scopus 로고    scopus 로고
    • RankAggreg, an R package for weighted rank aggregation
    • RankAggreg, an R package for weighted rank aggregation. Pihur V, Datta S, Datta S, BMC Bioinformatics 2009 10
    • (2009) BMC Bioinformatics , vol.10
    • Pihur, V.1    Datta, S.2    Datta, S.3
  • 30
    • 66149170070 scopus 로고    scopus 로고
    • Real-Time Quantitative RT-PCR: Design, calculations, and statistics
    • 10.1105/tpc.109.066001 19395682
    • Real-Time Quantitative RT-PCR: design, calculations, and statistics. Rieu I, Powers SJ, Plant Cell 2009 21 1031 1033 10.1105/tpc.109.066001 19395682
    • (2009) Plant Cell , vol.21 , pp. 1031-1033
    • Rieu, I.1    Powers, S.J.2
  • 31
    • 0032827701 scopus 로고    scopus 로고
    • Construction of a genetic linkage map for roses using RAPD and AFLP markers
    • DOI 10.1007/s001220051310
    • Construction of a genetic linkage map for roses using RAPD and AFLP markers. Debener T, Mattiesch L, Theor ApplGenet 1999 99 891 899 (Pubitemid 29464038)
    • (1999) Theoretical and Applied Genetics , vol.99 , Issue.5 , pp. 891-899
    • Debener, T.1    Mattiesch, L.2
  • 32
    • 29144473582 scopus 로고    scopus 로고
    • Effects of thidiazuron, ethylene, abscisic acid and dark storage on leaf yellowing and rooting of Pelargonium cuttings
    • Effects of thidiazuron, ethylene, abscisic acid and dark storage on leaf yellowing and rooting of Pelargonium cuttings. Mutui TM, Mibus H, Serek M, J Horticultural Sci Biotechnol 2005 80 543 550 (Pubitemid 41805724)
    • (2005) Journal of Horticultural Science and Biotechnology , vol.80 , Issue.5 , pp. 543-550
    • Mutui, T.M.1    Mibus, H.2    Serek, M.3
  • 33
    • 0031875002 scopus 로고    scopus 로고
    • Identification of five physiological races of blackspot, Diplocarpon rosae, Wolf on roses
    • Identification of five physiological races of blackspot, Diplocarpon rosae, Wolf on roses. Debener T, Drewes-Alvarez R, Rockstroh K, Plant Breed 1998 117 267 270 10.1111/j.1439-0523.1998.tb01937.x (Pubitemid 28381979)
    • (1998) Plant Breeding , vol.117 , Issue.3 , pp. 267-270
    • Debener, T.1    Drewes-Alvarez, R.2    Rockstroh, K.3
  • 34
    • 84855352020 scopus 로고    scopus 로고
    • FGENESH. http://linux1.softberry.com/berry.phtml?topic=fgenesh&group= programs&subgroup=gfind
    • FGENESH
  • 35
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Primer3 on the WWW for general users and for biologist programmers. Rozen S, Skaletsky H, Methods Mol Biol (Clifton, N.J.) 2000 132 365 386
    • (2000) Methods Mol Biol (Clifton, N.J.) , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 36
    • 7244257594 scopus 로고    scopus 로고
    • PerlPrimer: Cross-platform, graphical primer design for standard, bisulphite and real-time PCR
    • DOI 10.1093/bioinformatics/bth254
    • PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR. Marshall OJ, Bioinformatics 2004 20 2471 2472 10.1093/bioinformatics/bth254 15073005 (Pubitemid 39429922)
    • (2004) Bioinformatics , vol.20 , Issue.15 , pp. 2471-2472
    • Marshall, O.J.1
  • 37
    • 44449099134 scopus 로고    scopus 로고
    • A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR
    • A kinetic-based sigmoidal model for the polymerase chain reaction and its application to high-capacity absolute quantitative real-time PCR. Rutledge RG, Stewart D, BMC Biotechnology 2008 8
    • (2008) BMC Biotechnology , vol.8
    • Rutledge, R.G.1    Stewart, D.2
  • 38
  • 39
    • 45449087921 scopus 로고    scopus 로고
    • QBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
    • DOI 10.1186/gb-2007-8-2-r19
    • qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Hellemans J, Mortier G, Paepe A, Speleman F, Vandesompele J, Genome Biol 2007 8 19 10.1186/gb-2007-8-2- r19 17291332 (Pubitemid 351851037)
    • (2007) Genome Biology , vol.8 , Issue.2
    • Hellemans, J.1    Mortier, G.2    De Paepe, A.3    Speleman, F.4    Vandesompele, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.