A novel and efficient assay for identification and quantification of Acidithiobacillus ferrooxidans in bioleaching samples

Journal of Industrial Microbiology and Biotechnology

Volumn 39, Issue 8, 2012, Pages 1161-1168

  Feng, Shoushuai ^a   Xin, Yu ^a   Yang, Hailin ^a   Zhang, Ling ^a   Kang, Wenliang ^a   Xia, Xiaole ^a   Wang, Wu ^a  

^a JIANGNAN UNIVERSITY   (China)

Author keywords

16S rRNA; Acidithiobacillus ferrooxidans; Bioleaching; Quantitative assay; Sandwich hybridization

Indexed keywords

FLUORESCENT DYE; NUCLEASE S1; RNA 16S;

16S RRNA BASED SANDWICH HYBRIDIZATION ASSAY; ACCURACY; ACIDITHIOBACILLUS FERROOXIDANS; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BIOLEACHING; CALIBRATION; CONTROLLED STUDY; DNA PROBE; HYBRIDIZATION; IMMUNOASSAY; MICROSCOPY; NONHUMAN; QUANTITATIVE ASSAY; SENSITIVITY AND SPECIFICITY; SPECIES CULTIVATION; SYNTHESIS;

ACIDITHIOBACILLUS; BASE SEQUENCE; CALIBRATION; DNA PROBES; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S;

ACIDITHIOBACILLUS FERROOXIDANS; BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 84865191830     PISSN: 13675435     EISSN: 14765535     Source Type: Journal    
DOI: 10.1007/s10295-012-1118-9     Document Type: Article

References (26)

1. A Amouric C Brochier-Armanet DB Johnson V Bonnefoy KB Hallberg 2011 Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways Microbiology 157 111 122 20884692 10.1099/mic.0.044537-0 1:CAS:528:DC%2BC3MXhtlCgtLo%3D
2. F Battaglia-Brunet M Clarens P Hugues JJ Godon S Foucher D Morin 2002 Monitoring of a pyrite-oxidising bacterial population using DNA single-strand conformation polymorphism and microscopic techniques Appl Microbiol Biotechnol 60 206 211 12382065 10.1007/s00253-002-1095-4 1:CAS:528:DC%2BD38XnvVOqu74%3D
3. HR Beller SR Kane TC Legler PJJ Alvarez 2002 A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene Environ Sci Technol 36 3977 3984 12269751 10.1021/es025556w 1:CAS:528:DC%2BD38XlvFGlsbo%3D (Pubitemid 35024509)
4. RF Bergamo MTM Novo RV Verissimo LC Paulino NC Stoppe MIZ Sato GP Manfio PI Prado O Garcia LMM Ottoboni 2004 Differentiation of Acidithiobacillus ferrooxidans and A. thiooxidans strains based on 16S-23S rDNA spacer polymorphism analysis Res Microbiol 155 559 567 15313256 10.1016/j.resmic.2004. 03.009 1:CAS:528:DC%2BD2cXmslektL4%3D (Pubitemid 39094207)
5. K Bosecker 1997 Bioleaching: metal solubilization by microorganisms FEMS Microbiol Rev 20 591 604 10.1111/j.1574-6976.1997.tb00340.x 1:CAS:528: DyaK2sXltl2msbc%3D (Pubitemid 27381927)
6. BW Chen XY Liu WY Liu JK Wen 2009 Application of clone library analysis and real-time PCR for comparison of microbial communities in a low-grade copper sulfide ore bioheap leachate J Ind Microbiol Biotechnol 36 1409 1416 10.1007/s10295-009-0633-9 1:CAS:528:DC%2BD1MXht1yktbnM
7. NJ Coram DE Rawlings 2002 Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptospirillum ferriphilum sp. nov. dominates South African commercial biooxidation tanks that operate at 40 °C Appl Environ Microbiol 68 838 845 11823226 10.1128/AEM.68.2.838-845.2002 1:CAS:528:DC%2BD38XhtV2nsLk%3D (Pubitemid 34113075)
8. SR Dave KH Gupta DR Tipre 2008 Characterization of arsenic resistant and arsenopyrite oxidizing Acidithiobacillus ferrooxidans from Hutti gold leachate and effluents Bioresour Technol 99 7514 7520 18367394 10.1016/j.biortech.2008. 02.019 1:CAS:528:DC%2BD1cXns1aksrg%3D
9. CS Demergasso PA Galleguillos LV Escudero VJ Zepeda D Castillo EO Casamayor 2005 Molecular characterization of microbial populations in a low-grade copper ore bioleaching test heap Hydrometallurgy 80 241 253 10.1016/j.hydromet.2005.07.013 1:CAS:528:DC%2BD2MXht1CltrrJ (Pubitemid 41690250)
10. M Dopson EB Lindström 2004 Analysis of community composition during moderately thermophilic bioleaching of pyrite, arsenical pyrite, and chalcopyrite Microbiol Ecol 48 19 28 10.1007/s00248-003-2028-1 1:CAS:528:DC%2BD2cXotVCgu7Y%3D (Pubitemid 39160985)
11. MA Dziurla W Achouak BT Lam T Heulin J Berthelin 1998 Enzyme-linked immunofiltration assay to estimate attachment of thiobacilli to pyrite Appl Environ Microbiol 64 2937 2942 9687454 1:CAS:528:DyaK1cXlsVKntr4%3D (Pubitemid 28363165)
12. N Fierer RB Jackson 2006 The diversity and biogeography of soil bacterial communities Proc Natl Acad Sci USA 103 626 631 16407148 10.1073/pnas.0507535103 1:CAS:528:DC%2BD28XhtVOiurY%3D (Pubitemid 43153076)
13. A Frey B Meckelein D Externest MA Schmidt 2000 A stable and highly sensitive 3,30,5,50-tetramethylbenzidine-based substrate reagent for enzyme-linked immunosorbent assays J Immunol Methods 233 47 56 10648855 10.1016/S0022-1759(99)00166-0 1:CAS:528:DC%2BD3cXltVaqug%3D%3D (Pubitemid 30058234)
14. DJ Herman TK Tokunaga JM Wan MK Firestone 2006 Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation Appl Environ Microbiol 72 6288 6298 16957256 10.1128/AEM.00472-06 (Pubitemid 44078808)
15. DG Hopper J Shane DC Straus KH Kilburn V Bolton JS Sutton FT Guilford 2010 Isolation of sulfur reducing and oxidizing bacteria found in contaminated drywall Int J Mol Sci 11 647 655 10.3390/ijms11020647
16. JR Hutton JG Wetmur 1975 Activity of endonuclease S1 in denaturing solvents: dimethysulfoxide, dimethylformamide, formamide and formaldehyde Biochem Biophys Res Commun 66 3 942 948 241350 10.1016/0006-291X(75)90731-7 1:CAS:528:DyaE2MXlslClsrs%3D
17. KK Mahmoud LG Leduc GD Ferroni 2005 Detection of Acidithiobacillus ferrooxidans in acid mine drainage environments using fluorescent in situ hybridization (FISH) J Microbiol Methods 61 33 45 15676194 10.1016/j.mimet.2004. 10.022 1:CAS:528:DC%2BD2MXosVGktw%3D%3D (Pubitemid 40164874)
18. P Ramírez N Guiliani L Valenzuela S Beard CA Jerez 2004 Differential protein expression during growth of Acidithiobacillus ferrooxidans on ferrous iron, sulfur compounds, or metal sulfides Appl Environ Microbiol 70 4491 4498 15294777 10.1128/AEM.70.8.4491-4498.2004 (Pubitemid 39095467)
19. DE Rawlings H Tributsch GS Hansford 1999 Reasons why " Leptospirillum"-like species rather than Thiobacillus ferrooxidans are the dominant iron-oxidizing bacteria in many commercial processes for the biooxidation of pyrite and related ores Microbiology 145 5 13 10206710 10.1099/13500872-145-1-5 1:CAS:528:DyaK1MXmtleksw%3D%3D (Pubitemid 29043573)
20. MO Schrenk KJ Edwards RM Goodman RJ Hamers JF Banfield 1998 Distribution of Thiobacillus ferrooxidans and Leptospirillum ferrooxidans: implications for generation of acid mine drainage Science 279 1519 1522 9488647 10.1126/science.279.5356.1519 1:CAS:528:DyaK1cXhs1Knurk%3D (Pubitemid 28217072)
21. CJ Smith DB Nedwell LF Dong AM Osborn 2006 Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples Environ Microbiol 8 804 815 16623738 10.1111/j.1462-2920.2005.00963.x 1:CAS:528:DC%2BD28XlsVektbc%3D
22. O Stabnikova XY Liu JY Wang V Ivanov 2006 Quantification of methanogens by fluorescence in situ hybridization with oligonucleotide probe Appl Microbiol Biotechnol 73 696 702 16767462 10.1007/s00253-006-0490-7 1:CAS:528: DC%2BD28XhtF2ksL3F (Pubitemid 44748961)
23. J Valdes I Pedroso R Quatrini RJ Dodson H Tettelin R Blake JA Eisen DS Holmes 2008 Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications BMC Genomics 9 597 19077236 10.1186/1471-2164-9-597
24. HR Walting 2006 The bioleaching of sulphide minerals with emphasis on copper sulphides-a review Hydrometallurgy 84 81 108 10.1016/j.hydromet.2006.05. 001 (Pubitemid 44307480)
25. CT Wittwer MG Herrmann AA Moss RP Rasmussen 1997 Continuous fluorescence monitoring of rapid cycle DNA amplification Biotechniques 22 130 138 8994660 1:CAS:528:DyaK2sXlsFWhsg%3D%3D (Pubitemid 27036426)
26. X Xie S Xiao Z He J Liu GZ Qiu 2007 Microbial populations in acid mineral bioleaching systems of Tong Shankou Copper Mine, China J Appl Microbiol 103 1227 1238 17897227 10.1111/j.1365-2672.2007.03382.x 1:CAS:528:DC%2BD2sXhtlSqu7rM (Pubitemid 47493267)