메뉴 건너뛰기




Volumn 155, Issue 7, 2004, Pages 559-567

Differentiation of Acidithiobacillus ferrooxidans and A. thiooxidans strains based on 16S-23S rDNA spacer polymorphism analysis

Author keywords

16S 23S rDNA spacer; Acidithiobacillus ferrooxidans; Acidithiobacillus thiooxidans

Indexed keywords

ALANINE; BACTERIAL ENZYME; DNA 16S; ISOLEUCINE; SPACER DNA; THREONINE; TRANSFER RNA;

EID: 4143078418     PISSN: 09232508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.resmic.2004.03.009     Document Type: Article
Times cited : (26)

References (33)
  • 1
    • 0345004957 scopus 로고    scopus 로고
    • RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: A phylogenetic approach
    • Aakra A., Utaker J.B., Nes I.F. RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: A phylogenetic approach. Int. J. Syst. Bacteriol. 49:1999;123-130
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 123-130
    • Aakra, A.1    Utaker, J.B.2    Nes, I.F.3
  • 3
    • 0030759086 scopus 로고    scopus 로고
    • Bioleaching: Metal solubilization by microorganisms
    • Bosecker K. Bioleaching: Metal solubilization by microorganisms. FEMS Microbiol. Rev. 20:1997;591-604
    • (1997) FEMS Microbiol. Rev. , vol.20 , pp. 591-604
    • Bosecker, K.1
  • 4
    • 0034490691 scopus 로고    scopus 로고
    • Evidence for conserved tRNA genes in the 16S-23S rDNA spacer sequence and two rrn operons of Xylella fastidiosa
    • Chen J., Banks D., Jarret R.L., Jones J.B. Evidence for conserved tRNA genes in the 16S-23S rDNA spacer sequence and two rrn operons of Xylella fastidiosa. Can. J. Microbiol. 46:2000;1171-1175
    • (2000) Can. J. Microbiol. , vol.46 , pp. 1171-1175
    • Chen, J.1    Banks, D.2    Jarret, R.L.3    Jones, J.B.4
  • 7
    • 0002007833 scopus 로고
    • Isolation and purification of Thiobacillus ferrooxidans and Thiobacillus thiooxidans from some coal and uranium mines of Brazil
    • Garcia O. Jr. Isolation and purification of Thiobacillus ferrooxidans and Thiobacillus thiooxidans from some coal and uranium mines of Brazil. Rev. Microbiol. 22:1991;1-6
    • (1991) Rev. Microbiol. , vol.22 , pp. 1-6
    • Garcia Jr., O.1
  • 8
    • 0036201274 scopus 로고    scopus 로고
    • Phylogenetic analysis of Xanthomonas species based upon 16S-23S rDNA intergenic spacer sequences
    • Gonçalves E.R., Rosato Y.B. Phylogenetic analysis of Xanthomonas species based upon 16S-23S rDNA intergenic spacer sequences. Int. J. Syst. Evol. Microbiol. 52:2002;355-361
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 355-361
    • Gonçalves, E.R.1    Rosato, Y.B.2
  • 9
    • 0025091091 scopus 로고
    • Cloning, characterization, and complementation of lesions causing acid sensitivity in Tn5-induced mutants of Rhizobium meliloti WSM419
    • Goss T.J., O'hara G.W., Dilworth M.J., Glenn A.R. Cloning, characterization, and complementation of lesions causing acid sensitivity in Tn5-induced mutants of Rhizobium meliloti WSM419. J. Bacteriol. 172:1990;5173-5179
    • (1990) J. Bacteriol. , vol.172 , pp. 5173-5179
    • Goss, T.J.1    O'Hara, G.W.2    Dilworth, M.J.3    Glenn, A.R.4
  • 10
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16-23S rDNA spacer region
    • Gürtler V., Stanisich V.A. New approaches to typing and identification of bacteria using the 16-23S rDNA spacer region. Microbiology. 142:1996;3-16
    • (1996) Microbiology , vol.142 , pp. 3-16
    • Gürtler, V.1    Stanisich, V.A.2
  • 11
    • 0023742397 scopus 로고
    • A compilation of large subunit RNA sequences present in a structural format
    • Gutell R.R., Fox G.E. A compilation of large subunit RNA sequences present in a structural format. Nucleic Acids Res. 16:(Suppl.):1988;r175-r201
    • (1988) Nucleic Acids Res. , vol.16 , Issue.SUPPL. , pp. 175-r201
    • Gutell, R.R.1    Fox, G.E.2
  • 12
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:1999;95-98
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 13
    • 0029566239 scopus 로고
    • TRNA intergenic spacers reveal polymorphism diagnostic for Xanthomonas albilineans
    • Honeycut R.J., Sobral B.W.S., McClelland M. tRNA intergenic spacers reveal polymorphism diagnostic for Xanthomonas albilineans. Microbiology. 141:1995;3229-3239
    • (1995) Microbiology , vol.141 , pp. 3229-3239
    • Honeycut, R.J.1    Sobral, B.W.S.2    McClelland, M.3
  • 14
    • 0034065246 scopus 로고    scopus 로고
    • Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov.
    • Kelly D.P., Wood A.P. Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov. Int. J. Syst. Evol. Microbiol. 50:2000;511-516
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 511-516
    • Kelly, D.P.1    Wood, A.P.2
  • 15
    • 0000650063 scopus 로고
    • Aerobic chemolithotrophic bacteria and associated organisms: Genus Thiobacillus, Beijerinck 1904b
    • J.T. Staley, M.P. Bryant, N. Pfenning, & J.G. Holt. Baltimore: Williams & Wilkins
    • Kelly D.P., Harrison A.P. Aerobic chemolithotrophic bacteria and associated organisms: Genus Thiobacillus, Beijerinck 1904b. Staley J.T., Bryant M.P., Pfenning N., Holt J.G. Bergey's Manual of Systematic Bacteriology, vol. 3. 1989;1842-1858 Williams & Wilkins, Baltimore
    • (1989) Bergey's Manual of Systematic Bacteriology, Vol. 3 , pp. 1842-1858
    • Kelly, D.P.1    Harrison, A.P.2
  • 18
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt, & M. Goodfellow. New York: Wiley
    • Lane D.J. 16S/23S rRNA sequencing. Stackebrandt E., Goodfellow M. Nucleic Acid Techniques in Bacterial Systematics. 1991;115-175 Wiley, New York
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 20
    • 0028179505 scopus 로고
    • The chemolithotrophic bacterium Thiobacillus ferrooxidans
    • Leduc L.G., Ferroni G.D. The chemolithotrophic bacterium Thiobacillus ferrooxidans. FEMS Microbiol. Rev. 14:1994;103-120
    • (1994) FEMS Microbiol. Rev. , vol.14 , pp. 103-120
    • Leduc, L.G.1    Ferroni, G.D.2
  • 21
    • 0003843310 scopus 로고    scopus 로고
    • Randomization, Bootstrap and Monte Carlo Methods in Biology
    • London: Chapman & Hall
    • Manly B.F.J. Randomization, Bootstrap and Monte Carlo Methods in Biology. second ed. :1998;Chapman & Hall, London
    • (1998) Second Ed.
    • Manly, B.F.J.1
  • 22
    • 0001823647 scopus 로고
    • Bacterial community fingerprinting of amplified 16 and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA)
    • A.D.L. Akkermans, J.D. van Elsas, & F.J. de Bruijn. Dordrecht: Kluwer Academic
    • Massol-Deya A.A., Odelson D.A., Hickey R.F., Tiedje J.M. Bacterial community fingerprinting of amplified 16 and 16-23S ribosomal DNA gene sequences and restriction endonuclease analysis (ARDRA). Akkermans A.D.L., van Elsas J.D., de Bruijn F.J. Molecular Microbial Ecology Manual. 1995;1-8 Kluwer Academic, Dordrecht
    • (1995) Molecular Microbial Ecology Manual , pp. 1-8
    • Massol-Deya, A.A.1    Odelson, D.A.2    Hickey, R.F.3    Tiedje, J.M.4
  • 24
    • 0035170025 scopus 로고    scopus 로고
    • Molecular characterization of Acidithiobacillus ferrooxidans and A. thiooxidans strains isolated from mine wastes in Brazil
    • Paulino L.C., Bergamo R.F., Mello M.P., Garcia O. Jr., Manfio G.P., Ottoboni L.M.M. Molecular characterization of Acidithiobacillus ferrooxidans and A. thiooxidans strains isolated from mine wastes in Brazil. Antonie van Leeuwenhoek. 80:2001;65-75
    • (2001) Antonie Van Leeuwenhoek , vol.80 , pp. 65-75
    • Paulino, L.C.1    Bergamo, R.F.2    Mello, M.P.3    Garcia Jr., O.4    Manfio, G.P.5    Ottoboni, L.M.M.6
  • 25
    • 0030009730 scopus 로고    scopus 로고
    • Bacterial populations in samples of bioleached copper ore as revealed by analysis of DNA obtained before and after cultivation
    • Pizarro J., Jedlicki E., Orellana O., Romero J., Espejo R.T. Bacterial populations in samples of bioleached copper ore as revealed by analysis of DNA obtained before and after cultivation. Appl. Environ. Microbiol. 62:1996;1323-1328
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1323-1328
    • Pizarro, J.1    Jedlicki, E.2    Orellana, O.3    Romero, J.4    Espejo, R.T.5
  • 26
    • 0028202450 scopus 로고
    • Molecular genetics of Thiobacillus ferrooxidans
    • Rawlings D.E., Kusano T. Molecular genetics of Thiobacillus ferrooxidans. Microbiol. Rev. 58:1994;39-55
    • (1994) Microbiol. Rev. , vol.58 , pp. 39-55
    • Rawlings, D.E.1    Kusano, T.2
  • 27
    • 0345462030 scopus 로고
    • Molecular Cloning: A Laboratory Manual
    • Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
    • Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. second ed. :1989;Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
    • (1989) Second Ed.
    • Sambrook, J.1    Fritsch, E.F.2    Maniatis, T.3
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0024529510 scopus 로고
    • Characterization of the two rRNA gene operons present in Thiobacillus ferrooxidans
    • Salazar O., Takamiya M., Orellana O. Characterization of the two rRNA gene operons present in Thiobacillus ferrooxidans. FEBS Lett. 242:1989;436-443
    • (1989) FEBS Lett. , vol.242 , pp. 436-443
    • Salazar, O.1    Takamiya, M.2    Orellana, O.3
  • 30
    • 0015273756 scopus 로고
    • Biology of Thiobacillus ferrooxidans in relation to the microbiological leaching of sulfide ore
    • Tuovinen O.H., Kelly D.P. Biology of Thiobacillus ferrooxidans in relation to the microbiological leaching of sulfide ore. Z. Allg. Mikrobiologie. 12:1972;311-346
    • (1972) Z. Allg. Mikrobiologie , vol.12 , pp. 311-346
    • Tuovinen, O.H.1    Kelly, D.P.2
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 32
    • 0024297124 scopus 로고
    • Sequence of two tRNA genes from a Thiobacillus ferrooxidans ribosomal operon
    • Venegas A., Hevia E., Sanchez H. Sequence of two tRNA genes from a Thiobacillus ferrooxidans ribosomal operon. Nucleic Acids Res. 16:1988;8179
    • (1988) Nucleic Acids Res. , vol.16 , pp. 8179
    • Venegas, A.1    Hevia, E.2    Sanchez, H.3
  • 33
    • 0043273085 scopus 로고
    • Thiobacillus, Beijerinck 1904
    • R.E. Buchanan, & N.E. Gibbons. Baltimore: Williams & Wilkins
    • Vishniac W.V. Thiobacillus, Beijerinck 1904. Buchanan R.E., Gibbons N.E. Bergey's Manual of Determinative Bacteriology. eighth ed. :1974;456-461 Williams & Wilkins, Baltimore
    • (1974) Bergey's Manual of Determinative Bacteriology Eighth Ed. , pp. 456-461
    • Vishniac, W.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.