메뉴 건너뛰기




Volumn 7, Issue , 2012, Pages 43-49

Specific detection of the toxic dinoflagellates Alexandrium tamarense and Alexandrium catenella from single vegetative cells by a loop-mediated isothermal amplification method

Author keywords

Alexandrium catenella; Alexandrium tamarense; Loop mediated isothermal amplification; Molecular detection; Paralytic shellfish poisoning; Plankton monitoring

Indexed keywords

PRIMER DNA;

EID: 84865189694     PISSN: 18747787     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.margen.2012.03.001     Document Type: Article
Times cited : (27)

References (38)
  • 1
    • 0028311744 scopus 로고
    • Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae)
    • Adachi M., Sako Y., Ishida Y. Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae). J. Phycol. 1994, 30:857-863.
    • (1994) J. Phycol. , vol.30 , pp. 857-863
    • Adachi, M.1    Sako, Y.2    Ishida, Y.3
  • 2
    • 33748783326 scopus 로고    scopus 로고
    • Fiber-optic microarray for simultaneous detection of multiple harmful algal bloom species
    • Ahn S., Kulis D.M., Erdner D.L., Anderson D.M., Walt D.R. Fiber-optic microarray for simultaneous detection of multiple harmful algal bloom species. Appl. Environ. Microbiol. 2006, 72:5742-5749.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5742-5749
    • Ahn, S.1    Kulis, D.M.2    Erdner, D.L.3    Anderson, D.M.4    Walt, D.R.5
  • 3
    • 27844467737 scopus 로고    scopus 로고
    • Identification and enumeration of Alexandrium spp. From the gulf of Maine using molecular probes
    • Anderson D.M., Kulis D.M., Keafer B.A., Gribble K.E., Marin R., Scholin C.A. Identification and enumeration of Alexandrium spp. From the gulf of Maine using molecular probes. Deep-Sea Res. II 2005, 52:2467-2490.
    • (2005) Deep-Sea Res. II , vol.52 , pp. 2467-2490
    • Anderson, D.M.1    Kulis, D.M.2    Keafer, B.A.3    Gribble, K.E.4    Marin, R.5    Scholin, C.A.6
  • 5
    • 0042921125 scopus 로고    scopus 로고
    • Use of loop-mediated isothermal amplification of the IS900 sequence for rapid detection of cultured Mycobacterium avium sub sp. Paratuberculosis
    • Enosawa M., Kageyama S., Sawai K., Watanabe K., Notomi T., Onoe S., Mori Y., Yokomizo Y. Use of loop-mediated isothermal amplification of the IS900 sequence for rapid detection of cultured Mycobacterium avium sub sp. Paratuberculosis. J. Clin. Microbiol. 2003, 41:4359-4365.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 4359-4365
    • Enosawa, M.1    Kageyama, S.2    Sawai, K.3    Watanabe, K.4    Notomi, T.5    Onoe, S.6    Mori, Y.7    Yokomizo, Y.8
  • 7
    • 43049108792 scopus 로고    scopus 로고
    • The ALEX chip-development of a DNA chip for identification and monitoring of Alexandrium
    • Gescher C., Metfies K., Medlin L.K. The ALEX chip-development of a DNA chip for identification and monitoring of Alexandrium. Harmful Algae 2008, 7:485-494.
    • (2008) Harmful Algae , vol.7 , pp. 485-494
    • Gescher, C.1    Metfies, K.2    Medlin, L.K.3
  • 8
    • 10944250687 scopus 로고    scopus 로고
    • Rapid detection of natural cells of Alexandrium tamarense and A. catenella (Dinophyceae) by fluorescence in situ hybridization
    • Hosoi-Tanabe S., Sako Y. Rapid detection of natural cells of Alexandrium tamarense and A. catenella (Dinophyceae) by fluorescence in situ hybridization. Harmful Algae 2005, 4:319-328.
    • (2005) Harmful Algae , vol.4 , pp. 319-328
    • Hosoi-Tanabe, S.1    Sako, Y.2
  • 9
    • 33846900190 scopus 로고    scopus 로고
    • Species-specific detection and quantification of the toxic dinoflagellate Alexandrium tamarense by TaqMan PCR using 5'-3' exonuclease activity
    • Hosoi-Tanabe S., Nagai S., Sako Y. Species-specific detection and quantification of the toxic dinoflagellate Alexandrium tamarense by TaqMan PCR using 5'-3' exonuclease activity. Mar. Biotechnol. 2004, 6:30-34.
    • (2004) Mar. Biotechnol. , vol.6 , pp. 30-34
    • Hosoi-Tanabe, S.1    Nagai, S.2    Sako, Y.3
  • 10
    • 84865175547 scopus 로고    scopus 로고
    • Isolation and characterization of proliferating cell nuclear antigen and the small subunit ribosomal RNA genes in dinoflagellates: Insights into dinoflagellate genome evolution. Ph.D. thesis, University of Connecticut, USA
    • Y. Hou, Isolation and characterization of proliferating cell nuclear antigen and the small subunit ribosomal RNA genes in dinoflagellates: Insights into dinoflagellate genome evolution. Ph.D. thesis, University of Connecticut, USA, 2008.
    • (2008)
    • Hou, Y.1
  • 11
    • 84865167394 scopus 로고    scopus 로고
    • Abundance and distribution of Alexandrium spp. resting cysts in the surface sediments of Ise Bay and Mikawa Bay, central part of Japan
    • Ishikawa A., Hattori M., Miyama H., Imai I. Abundance and distribution of Alexandrium spp. resting cysts in the surface sediments of Ise Bay and Mikawa Bay, central part of Japan. Bull. Jpn. Soc. Fish. Oceanogr. 2007, 71:183-189.
    • (2007) Bull. Jpn. Soc. Fish. Oceanogr. , vol.71 , pp. 183-189
    • Ishikawa, A.1    Hattori, M.2    Miyama, H.3    Imai, I.4
  • 12
    • 27944466811 scopus 로고    scopus 로고
    • Development of a quantification assay for the cysts of the toxic dinoflagellate Alexandrium tamarense using real-time polymerase chain reaction
    • Kamikawa R., Hosoi-Tanabe S., Nagai S., Itakura S., Sako Y. Development of a quantification assay for the cysts of the toxic dinoflagellate Alexandrium tamarense using real-time polymerase chain reaction. Fish. Sci. 2005, 71:985-989.
    • (2005) Fish. Sci. , vol.71 , pp. 985-989
    • Kamikawa, R.1    Hosoi-Tanabe, S.2    Nagai, S.3    Itakura, S.4    Sako, Y.5
  • 13
    • 33947148224 scopus 로고    scopus 로고
    • Application of real-time PCR assay for detection and quantification of Alexandrium tamarense and A. catenella cysts from marine sediments
    • Kamikawa R., Nagai S., Hosoi-Tanabe S., Itakura S., Yamaguchi M., Uchida Y., Baba T., Sako Y. Application of real-time PCR assay for detection and quantification of Alexandrium tamarense and A. catenella cysts from marine sediments. Harmful Algae 2007, 6:413-420.
    • (2007) Harmful Algae , vol.6 , pp. 413-420
    • Kamikawa, R.1    Nagai, S.2    Hosoi-Tanabe, S.3    Itakura, S.4    Yamaguchi, M.5    Uchida, Y.6    Baba, T.7    Sako, Y.8
  • 14
    • 32844458773 scopus 로고    scopus 로고
    • A low-density oligonucleotide array study for parallel detection of harmful algal species using hybridization of consensus PCR products of LSU rDNA domain
    • Ki J.S., Han M.S. A low-density oligonucleotide array study for parallel detection of harmful algal species using hybridization of consensus PCR products of LSU rDNA domain. Biosens. Bioelectron. 2006, 21:1812-1821.
    • (2006) Biosens. Bioelectron. , vol.21 , pp. 1812-1821
    • Ki, J.S.1    Han, M.S.2
  • 15
    • 0001150029 scopus 로고    scopus 로고
    • Distribution of resting cysts of the toxic dinoflagellate Alexandrium catenella and/or A. tamarense in the coastal areas of western Shikoku and Kyushu, Japan
    • Kotani Y., Koyama A., Yamaguchi M., Imai I. Distribution of resting cysts of the toxic dinoflagellate Alexandrium catenella and/or A. tamarense in the coastal areas of western Shikoku and Kyushu, Japan. Bull. Jpn. Soc. Fish Oceanogr. 1998, 62:104-111.
    • (1998) Bull. Jpn. Soc. Fish Oceanogr. , vol.62 , pp. 104-111
    • Kotani, Y.1    Koyama, A.2    Yamaguchi, M.3    Imai, I.4
  • 16
    • 57649201319 scopus 로고    scopus 로고
    • Bloom forming Alexandrium ostenfeldii (Dinophyceae) in shallow waters of the Aland Årchipelago, Northern Baltic Sea
    • Kremp A., Lindholm T., Dreßler N., Erler K., Gerdts G., Eirtovaara S., Leskinen E. Bloom forming Alexandrium ostenfeldii (Dinophyceae) in shallow waters of the Aland Årchipelago, Northern Baltic Sea. Harmful Algae 2009, 8:318-328.
    • (2009) Harmful Algae , vol.8 , pp. 318-328
    • Kremp, A.1    Lindholm, T.2    Dreßler, N.3    Erler, K.4    Gerdts, G.5    Eirtovaara, S.6    Leskinen, E.7
  • 17
    • 0242491034 scopus 로고    scopus 로고
    • Alexandrium camurascutulum sp. nov. (Dinophyceae): a new dinoflagellate species from New Zealand
    • MacKenzie L., Todd K. Alexandrium camurascutulum sp. nov. (Dinophyceae): a new dinoflagellate species from New Zealand. Harmful Algae 2002, 1:295-300.
    • (2002) Harmful Algae , vol.1 , pp. 295-300
    • MacKenzie, L.1    Todd, K.2
  • 18
    • 63849137383 scopus 로고    scopus 로고
    • Unexpected genetic diversity among and within populations of the toxic dinoflagellate Alexandrium catenella as revealed by nuclear microsatellite markers
    • Masseret E., Grzebyk D., Nagai S., Genovesi B., Lasserre B., Laabir M., Coolos Y., Vaquer A., Berrebi P. Unexpected genetic diversity among and within populations of the toxic dinoflagellate Alexandrium catenella as revealed by nuclear microsatellite markers. Appl. Environ. Microbiol. 2009, 75:2037-2045.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2037-2045
    • Masseret, E.1    Grzebyk, D.2    Nagai, S.3    Genovesi, B.4    Lasserre, B.5    Laabir, M.6    Coolos, Y.7    Vaquer, A.8    Berrebi, P.9
  • 20
    • 1842422487 scopus 로고    scopus 로고
    • Alexandrium tamutum sp. nov. (Dinophyceae): a new nontoxic species in the genus Alexandrium
    • Montresor M., John U., Beran A., Medlin L.K. Alexandrium tamutum sp. nov. (Dinophyceae): a new nontoxic species in the genus Alexandrium. J. Phycol. 2004, 40:398-411.
    • (2004) J. Phycol. , vol.40 , pp. 398-411
    • Montresor, M.1    John, U.2    Beran, A.3    Medlin, L.K.4
  • 21
    • 0035940965 scopus 로고    scopus 로고
    • Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation
    • Mori Y., Nagamine K., Tomita N., Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 2001, 289:150-154.
    • (2001) Biochem. Biophys. Res. Commun. , vol.289 , pp. 150-154
    • Mori, Y.1    Nagamine, K.2    Tomita, N.3    Notomi, T.4
  • 22
    • 79958772724 scopus 로고    scopus 로고
    • Development of a multiplex PCR assay for simultaneous detection of 6 Alexandrium species (Dinophyceae)
    • Nagai S. Development of a multiplex PCR assay for simultaneous detection of 6 Alexandrium species (Dinophyceae). J. Phycol. 2011, 47:703-708.
    • (2011) J. Phycol. , vol.47 , pp. 703-708
    • Nagai, S.1
  • 23
    • 0344718884 scopus 로고    scopus 로고
    • Encystment under laboratory conditions of the toxic dinoflagellate Alexandrium tamiyavanichii (Dinophyceae) isolated from the Seto Inland Sea, Japan
    • Nagai S., Itakura S., Matsuyama Y., Kotani Y. Encystment under laboratory conditions of the toxic dinoflagellate Alexandrium tamiyavanichii (Dinophyceae) isolated from the Seto Inland Sea, Japan. Phycologia 2003, 42:646-653.
    • (2003) Phycologia , vol.42 , pp. 646-653
    • Nagai, S.1    Itakura, S.2    Matsuyama, Y.3    Kotani, Y.4
  • 24
    • 4644251729 scopus 로고    scopus 로고
    • Effect of nutrients and temperature on encystment of the toxic dinoflagellate Alexandrium tamarense (Dinophyceae) isolated from Hiroshima Bay
    • Nagai S., Matsuyama Y., Oh S.J., Itakura S. Effect of nutrients and temperature on encystment of the toxic dinoflagellate Alexandrium tamarense (Dinophyceae) isolated from Hiroshima Bay. Japan. Plankton Biol. Ecol. 2004, 51:103-109.
    • (2004) Japan. Plankton Biol. Ecol. , vol.51 , pp. 103-109
    • Nagai, S.1    Matsuyama, Y.2    Oh, S.J.3    Itakura, S.4
  • 25
    • 33646893088 scopus 로고    scopus 로고
    • Development of microsatellite markers in the noxious red tide-causing algae Heterosigma akashiwo (Raphidophyceae)
    • Nagai S., Yamaguchi S., Matsuyama Y., Itakura S. Development of microsatellite markers in the noxious red tide-causing algae Heterosigma akashiwo (Raphidophyceae). Mol. Ecol. Notes 2006, 6:477-479.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 477-479
    • Nagai, S.1    Yamaguchi, S.2    Matsuyama, Y.3    Itakura, S.4
  • 27
    • 35848943670 scopus 로고    scopus 로고
    • Development of microsatellite markers in the noxious red tide-causing algae Heterocapsa circularisquama
    • Nagai S., Yamaguchi S., Lian C.L., Nishitani G., Itakura S., Yamaguchi M. Development of microsatellite markers in the noxious red tide-causing algae Heterocapsa circularisquama. Mol. Ecol. Notes 2007, 7:993-995.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 993-995
    • Nagai, S.1    Yamaguchi, S.2    Lian, C.L.3    Nishitani, G.4    Itakura, S.5    Yamaguchi, M.6
  • 28
    • 65949094598 scopus 로고    scopus 로고
    • Genetic structuring and transfer of marine dinoflagellate Cochlodinium polykrikoides in Japanese and Korean coastal waters revealed by microsatellites
    • Nagai S., Nishitani G., Sakamoto S., Sugaya T., Lee C.K., Kim C.H., Itakura S., Yamaguchi M. Genetic structuring and transfer of marine dinoflagellate Cochlodinium polykrikoides in Japanese and Korean coastal waters revealed by microsatellites. Mol. Ecol. 2009, 18:2337-2352.
    • (2009) Mol. Ecol. , vol.18 , pp. 2337-2352
    • Nagai, S.1    Nishitani, G.2    Sakamoto, S.3    Sugaya, T.4    Lee, C.K.5    Kim, C.H.6    Itakura, S.7    Yamaguchi, M.8
  • 29
    • 66149165754 scopus 로고    scopus 로고
    • Encystment and excystment under laboratory conditions of the non-toxic dinoflagellate Alexandrium fraterculus (Dinophyceae) isolated from the Seto Inland Sea, Japan
    • Nagai S., Nishitani G., Takano Y., Yoshida M., Takayama H. Encystment and excystment under laboratory conditions of the non-toxic dinoflagellate Alexandrium fraterculus (Dinophyceae) isolated from the Seto Inland Sea, Japan. Phycologia 2009, 48:177-185.
    • (2009) Phycologia , vol.48 , pp. 177-185
    • Nagai, S.1    Nishitani, G.2    Takano, Y.3    Yoshida, M.4    Takayama, H.5
  • 30
    • 79958771876 scopus 로고    scopus 로고
    • Polymorphisms of the nuclear ribosomal RNA genes found in the different geographic origins in the toxic dinoflagellate Alexandrium ostenfel-dii and the species detection from a single cell by LAMP
    • (in Japanese)
    • Nagai S., Maenpaa P., Kremp A., Baba K., Miyazono A., Godhe A., Mackenzie L., Anderson D.M. Polymorphisms of the nuclear ribosomal RNA genes found in the different geographic origins in the toxic dinoflagellate Alexandrium ostenfel-dii and the species detection from a single cell by LAMP. DNA Polymorphism 2010, 18:122-126. (in Japanese).
    • (2010) DNA Polymorphism , vol.18 , pp. 122-126
    • Nagai, S.1    Maenpaa, P.2    Kremp, A.3    Baba, K.4    Miyazono, A.5    Godhe, A.6    Mackenzie, L.7    Anderson, D.M.8
  • 31
    • 84865175548 scopus 로고    scopus 로고
    • Species-specific detection of the toxic di-noflagellate Alexandrium tamarense and A. catenella from single cysts by loop-mediated isothermal amplification method, Mar
    • Nagai S., Yamamoto K., Itakura S. Species-specific detection of the toxic di-noflagellate Alexandrium tamarense and A. catenella from single cysts by loop-mediated isothermal amplification method, Mar. Genomics 2012.
    • (2012) Genomics
    • Nagai, S.1    Yamamoto, K.2    Itakura, S.3
  • 32
    • 0036599262 scopus 로고    scopus 로고
    • Accelerated reaction by loop-mediated isothermal amplification using loop primers
    • Nagamine K., Hase T., Notomi T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell. Probes 2002, 16:223-229.
    • (2002) Mol. Cell. Probes , vol.16 , pp. 223-229
    • Nagamine, K.1    Hase, T.2    Notomi, T.3
  • 34
    • 85008016964 scopus 로고
    • The occurrence of Protogonyaulax spp. in Ofunato Bay, in association with the toxification of the scallop Patinopecten yessoensis
    • Oagata T., Kodama M., Fukuyo Y., Inoue T., Kamiya H., Matsuura F., Sekiguchi K., Watanabe S. The occurrence of Protogonyaulax spp. in Ofunato Bay, in association with the toxification of the scallop Patinopecten yessoensis. Bull. Jpn. Soc. Sci. Fish. 1982, 48:563-566.
    • (1982) Bull. Jpn. Soc. Sci. Fish. , vol.48 , pp. 563-566
    • Oagata, T.1    Kodama, M.2    Fukuyo, Y.3    Inoue, T.4    Kamiya, H.5    Matsuura, F.6    Sekiguchi, K.7    Watanabe, S.8
  • 37
    • 0028092436 scopus 로고
    • Identification of species and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). I. RFLP analysis of SSU rRNA genes
    • Scholin C.A., Anderson D.M. Identification of species and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). I. RFLP analysis of SSU rRNA genes. J. Phycol. 1994, 30:744-754.
    • (1994) J. Phycol. , vol.30 , pp. 744-754
    • Scholin, C.A.1    Anderson, D.M.2
  • 38
    • 0007926996 scopus 로고
    • The seasonal appearance of red tide organisms and flagellates in the southern Harina-Nada, Inland Sea of Seto
    • Yoshimatsu S., Ono C. The seasonal appearance of red tide organisms and flagellates in the southern Harina-Nada, Inland Sea of Seto. Bull. Akashiwo Res. Inst. Kagawa Pref. 1986, 2:1-42.
    • (1986) Bull. Akashiwo Res. Inst. Kagawa Pref. , vol.2 , pp. 1-42
    • Yoshimatsu, S.1    Ono, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.