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Volumn 47, Issue 3, 2011, Pages 703-708

Development of a multiplex PCR assay for simultaneous detection of six Alexandrium species (Dinophyceae)

Author keywords

Alexandrium; Dinoflagellate; Molecular detection; Multiplex PCR assay; Paralytic shellfish poisoning

Indexed keywords

ALEXANDRIUM; ALEXANDRIUM AFFINE; ALEXANDRIUM CATENELLA; ALEXANDRIUM FRATERCULUS; ALEXANDRIUM PSEUDOGONYAULAX; ALEXANDRIUM TAMIYAVANICHI; DINOPHYCEAE;

EID: 79958772724     PISSN: 00223646     EISSN: 15298817     Source Type: Journal    
DOI: 10.1111/j.1529-8817.2011.00976.x     Document Type: Note
Times cited : (30)

References (40)
  • 1
    • 0028311744 scopus 로고
    • Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae)
    • Adachi, M., Sako, Y. & Ishida, Y. 1994. Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae). J. Phycol. 30:857-63.
    • (1994) J. Phycol. , vol.30 , pp. 857-863
    • Adachi, M.1    Sako, Y.2    Ishida, Y.3
  • 2
    • 33748783326 scopus 로고    scopus 로고
    • Fiber-optic microarray for simultaneous detection of multiple harmful algal bloom species
    • Ahn, S., Kulis, D. M., Erdner, D. L., Anderson, D. M. & Walt, D. R. 2006. Fiber-optic microarray for simultaneous detection of multiple harmful algal bloom species. Appl. Environ. Microbiol. 72:5742-9.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 5742-5749
    • Ahn, S.1    Kulis, D.M.2    Erdner, D.L.3    Anderson, D.M.4    Walt, D.R.5
  • 4
    • 0003506076 scopus 로고
    • Sherkin Island Marine Station, Sherkin Island, County Cork, Ireland
    • Balech, E. 1995. The Genus Alexandrium Halim (Dinoflagellata). Sherkin Island Marine Station, Sherkin Island, County Cork, Ireland, 151 pp.
    • (1995) The Genus Alexandrium Halim (Dinoflagellata) , pp. 151
    • Balech, E.1
  • 5
    • 0035407646 scopus 로고    scopus 로고
    • Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing
    • Díez, B., Pedrós-Alió, C. & Massana, R. 2001. Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing. Appl. Environ. Microbiol. 67:2932-41.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2932-2941
    • Díez, B.1    Pedrós-Alió, C.2    Massana, R.3
  • 6
    • 43049108792 scopus 로고    scopus 로고
    • The ALEX chip-development of a DNA chip for identification and monitoring of Alexandrium
    • Gescher, C., Metfies, K. & Medlin, L. K. 2008. The ALEX chip-development of a DNA chip for identification and monitoring of Alexandrium. Harmful Algae 7:485-94.
    • (2008) Harmful Algae , vol.7 , pp. 485-494
    • Gescher, C.1    Metfies, K.2    Medlin, L.K.3
  • 8
    • 0036214499 scopus 로고    scopus 로고
    • First paralytic shellfish poison (PSP) infestation of bivalves due to toxic dinoflagellate Alexandrium tamiyavanichii, in the southeast coasts of the Seto Inland Sea, Japan
    • Hashimoto, T., Matsuoka, S., Yoshimatsu, S., Miki, K., Nishibori, N., Nismo, S. & Noguchi, T. 2002. First paralytic shellfish poison (PSP) infestation of bivalves due to toxic dinoflagellate Alexandrium tamiyavanichii, in the southeast coasts of the Seto Inland Sea, Japan. J. Food Hyg. Soc. Jpn. 43:1-5.
    • (2002) J. Food Hyg. Soc. Jpn. , vol.43 , pp. 1-5
    • Hashimoto, T.1    Matsuoka, S.2    Yoshimatsu, S.3    Miki, K.4    Nishibori, N.5    Nismo, S.6    Noguchi, T.7
  • 9
    • 33846900190 scopus 로고    scopus 로고
    • Species-specific detection and quantification of the toxic dinoflagellate Alexandrium tamarense by TaqMan PCR using 5'-3' exonuclease activity
    • Hosoi-Tanabe, S., Nagai, S. & Sako, Y. 2004. Species-specific detection and quantification of the toxic dinoflagellate Alexandrium tamarense by TaqMan PCR using 5'-3' exonuclease activity. Mar. Biotechnol. 6:30-4.
    • (2004) Mar. Biotechnol. , vol.6 , pp. 30-34
    • Hosoi-Tanabe, S.1    Nagai, S.2    Sako, Y.3
  • 10
    • 10944250687 scopus 로고    scopus 로고
    • Rapid detection of natural cells of Alexandrium tamarense and A. catenella (Dinophyceae) by fluorescence in situ hybridization
    • Hosoi-Tanabe, S. & Sako, Y. 2005. Rapid detection of natural cells of Alexandrium tamarense and A. catenella (Dinophyceae) by fluorescence in situ hybridization. Harmful Algae 4:319-28.
    • (2005) Harmful Algae , vol.4 , pp. 319-328
    • Hosoi-Tanabe, S.1    Sako, Y.2
  • 12
    • 27944466811 scopus 로고    scopus 로고
    • Development of a quantification assay for the cysts of the toxic dinoflagellate Alexandrium tamarense using real-time polymerase chain reaction
    • Kamikawa, R., Hosoi-Tanabe, S., Nagai, S., Itakura, S. & Sako, Y. 2005. Development of a quantification assay for the cysts of the toxic dinoflagellate Alexandrium tamarense using real-time polymerase chain reaction. Fish. Sci. 71:985-9.
    • (2005) Fish. Sci. , vol.71 , pp. 985-989
    • Kamikawa, R.1    Hosoi-Tanabe, S.2    Nagai, S.3    Itakura, S.4    Sako, Y.5
  • 13
    • 33947148224 scopus 로고    scopus 로고
    • Application of real-time PCR assay for detection and quantification of Alexandrium tamarense and A. catenella cysts from marine sediments
    • Kamikawa, R., Nagai, S., Hosoi-Tanabe, S., Itakura, S., Yamaguchi, M., Uchida, Y., Baba, T. & Sako, Y. 2007. Application of real-time PCR assay for detection and quantification of Alexandrium tamarense and A. catenella cysts from marine sediments. Harmful Algae 6:413-20.
    • (2007) Harmful Algae , vol.6 , pp. 413-420
    • Kamikawa, R.1    Nagai, S.2    Hosoi-Tanabe, S.3    Itakura, S.4    Yamaguchi, M.5    Uchida, Y.6    Baba, T.7    Sako, Y.8
  • 14
    • 32844458773 scopus 로고    scopus 로고
    • A low-density oligonucleotide array study for parallel detection of harmful algal species using hybridization of consensus PCR products of LSU rDNA domain
    • Ki, J. S. & Han, M. S. 2006. A low-density oligonucleotide array study for parallel detection of harmful algal species using hybridization of consensus PCR products of LSU rDNA domain. Biosens. Bioelectron. 21:1812-21.
    • (2006) Biosens. Bioelectron. , vol.21 , pp. 1812-1821
    • Ki, J.S.1    Han, M.S.2
  • 15
    • 0242491034 scopus 로고    scopus 로고
    • Alexandrium camurascutulum sp. nov. (Dinophyceae): a new dinoflagellate species from New Zealand
    • MacKenzie, L. & Todd, K. 2002. Alexandrium camurascutulum sp. nov. (Dinophyceae): a new dinoflagellate species from New Zealand. Harmful Algae 1:295-300.
    • (2002) Harmful Algae , vol.1 , pp. 295-300
    • MacKenzie, L.1    Todd, K.2
  • 16
    • 63849137383 scopus 로고    scopus 로고
    • Unexpected genetic diversity among and within populations of the toxic dinoflagellate Alexandrium catenella as revealed by nuclear microsatellite markers
    • Masseret, E., Grzebyk, D., Nagai, S., Genovesi, B., Lasserre, B., Laabir, M., Coolos, Y., Vaquer, A. & Berrebi, P. 2009. Unexpected genetic diversity among and within populations of the toxic dinoflagellate Alexandrium catenella as revealed by nuclear microsatellite markers. Appl. Environ. Microbiol. 75:2037-45.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2037-2045
    • Masseret, E.1    Grzebyk, D.2    Nagai, S.3    Genovesi, B.4    Lasserre, B.5    Laabir, M.6    Coolos, Y.7    Vaquer, A.8    Berrebi, P.9
  • 17
    • 35348884980 scopus 로고    scopus 로고
    • Identifying Pseudo-nitzschia species in natural samples using genus-specific PCR primers and clone libraries
    • McDonald, S. M., Sarno, D. & Zingone, A. 2007. Identifying Pseudo-nitzschia species in natural samples using genus-specific PCR primers and clone libraries. Harmful Algae 6:849-60.
    • (2007) Harmful Algae , vol.6 , pp. 849-860
    • McDonald, S.M.1    Sarno, D.2    Zingone, A.3
  • 19
    • 1842422487 scopus 로고    scopus 로고
    • Alexandrium tamutum sp. nov. (Dinophyceae): a new nontoxic species in the genus Alexandrium
    • Montresor, M., John, U., Beran, A. & Medlin, L. K. 2004. Alexandrium tamutum sp. nov. (Dinophyceae): a new nontoxic species in the genus Alexandrium. J. Phycol. 40:398-411.
    • (2004) J. Phycol. , vol.40 , pp. 398-411
    • Montresor, M.1    John, U.2    Beran, A.3    Medlin, L.K.4
  • 20
    • 0344718884 scopus 로고    scopus 로고
    • Encystment under laboratory conditions of the toxic dinoflagellate Alexandrium tamiyavanichii (Dinophyceae) isolated from the Seto Inland Sea, Japan
    • Nagai, S., Itakura, S., Matsuyama, Y. & Kotani, Y. 2003. Encystment under laboratory conditions of the toxic dinoflagellate Alexandrium tamiyavanichii (Dinophyceae) isolated from the Seto Inland Sea, Japan. Phycologia 42:646-53.
    • (2003) Phycologia , vol.42 , pp. 646-653
    • Nagai, S.1    Itakura, S.2    Matsuyama, Y.3    Kotani, Y.4
  • 21
    • 57749118809 scopus 로고    scopus 로고
    • New appearance of toxic dinoflagellate and toxification of shellfish in the Seto Inland Sea, Japan
    • (in Japanese).
    • Nagai, S., Kotani, Y. & Itakura, S. 2008a. New appearance of toxic dinoflagellate and toxification of shellfish in the Seto Inland Sea, Japan. Nippon Suisan Gakkaishi 74:880-3 (in Japanese).
    • (2008) Nippon Suisan Gakkaishi , vol.74 , pp. 880-883
    • Nagai, S.1    Kotani, Y.2    Itakura, S.3
  • 22
    • 33846900723 scopus 로고    scopus 로고
    • Microsatellite markers reveal population genetic structure of the toxic dinoflagellate Alexandrium tamarense (Dinophyceae) in Japanese coastal waters
    • Nagai, S., Lian, C. L., Yamaguchi, S., Hamaguchi, M., Matsuyama, Y., Itakura, S., Shimada, H., et al. 2007a. Microsatellite markers reveal population genetic structure of the toxic dinoflagellate Alexandrium tamarense (Dinophyceae) in Japanese coastal waters. J. Phycol. 43:43-54.
    • (2007) J. Phycol. , vol.43 , pp. 43-54
    • Nagai, S.1    Lian, C.L.2    Yamaguchi, S.3    Hamaguchi, M.4    Matsuyama, Y.5    Itakura, S.6    Shimada, H.7
  • 23
    • 79958771876 scopus 로고    scopus 로고
    • Polymorphisms of the nuclear ribosomal RNA genes found in the different geographic origins in the toxic dinoflagellate Alexandrium ostenfeldii and the species detection from a single cell by LAMP
    • (in Japanese).
    • Nagai, S., Maenpaa, P., Kremp, A., Baba, K., Miyazono, A., Godhe, A., Mackenzie, L. & Anderson, D. M. 2010. Polymorphisms of the nuclear ribosomal RNA genes found in the different geographic origins in the toxic dinoflagellate Alexandrium ostenfeldii and the species detection from a single cell by LAMP. DNA Polymorphism 18:122-6 (in Japanese).
    • (2010) DNA Polymorphism , vol.18 , pp. 122-126
    • Nagai, S.1    Maenpaa, P.2    Kremp, A.3    Baba, K.4    Miyazono, A.5    Godhe, A.6    Mackenzie, L.7    Anderson, D.M.8
  • 24
    • 4644251729 scopus 로고    scopus 로고
    • Effect of nutrients and temperature on encystment of the toxic dinoflagellate Alexandrium tamarense (Dinophyceae) isolated from Hiroshima Bay, Japan
    • Nagai, S., Matsuyama, Y., Oh, S. J. & Itakura, S. 2004. Effect of nutrients and temperature on encystment of the toxic dinoflagellate Alexandrium tamarense (Dinophyceae) isolated from Hiroshima Bay, Japan. Plankton Biol. Ecol. 51:103-9.
    • (2004) Plankton Biol. Ecol. , vol.51 , pp. 103-109
    • Nagai, S.1    Matsuyama, Y.2    Oh, S.J.3    Itakura, S.4
  • 25
    • 66149165754 scopus 로고    scopus 로고
    • Encystment and excystment under laboratory conditions of the non-toxic dinoflagellate Alexandrium fraterculus (Dinophyceae) isolated from the Seto Inland Sea, Japan
    • Nagai, S., Nishitani, G., Takano, Y., Yoshida, M. & Takayama, H. 2009a. Encystment and excystment under laboratory conditions of the non-toxic dinoflagellate Alexandrium fraterculus (Dinophyceae) isolated from the Seto Inland Sea, Japan. Phycologia 48:177-85.
    • (2009) Phycologia , vol.48 , pp. 177-185
    • Nagai, S.1    Nishitani, G.2    Takano, Y.3    Yoshida, M.4    Takayama, H.5
  • 26
    • 65949094598 scopus 로고    scopus 로고
    • Genetic structuring and transfer of marine dinoflagellate Cochlodinium polykrikoides in Japanese and Korean coastal waters revealed by microsatellites
    • Nagai, S., Nishitani, G., Sakamoto, S., Sugaya, T., Lee, C. K., Kim, C. H., Itakura, S. & Yamaguchi, M. 2009b. Genetic structuring and transfer of marine dinoflagellate Cochlodinium polykrikoides in Japanese and Korean coastal waters revealed by microsatellites. Mol. Ecol. 18:2337-52.
    • (2009) Mol. Ecol. , vol.18 , pp. 2337-2352
    • Nagai, S.1    Nishitani, G.2    Sakamoto, S.3    Sugaya, T.4    Lee, C.K.5    Kim, C.H.6    Itakura, S.7    Yamaguchi, M.8
  • 27
    • 48749095132 scopus 로고    scopus 로고
    • Predation on the ciliate Myrionecta rubra by the toxic dinoflagellate Dinophysis fortii and observation of sequestration of ciliate chloroplasts
    • Nagai, S., Nishitani, G., Tomaru, Y., Sakiyama, S. & Kamiyama, T. 2008b. Predation on the ciliate Myrionecta rubra by the toxic dinoflagellate Dinophysis fortii and observation of sequestration of ciliate chloroplasts. J. Phycol. 44:909-22.
    • (2008) J. Phycol. , vol.44 , pp. 909-922
    • Nagai, S.1    Nishitani, G.2    Tomaru, Y.3    Sakiyama, S.4    Kamiyama, T.5
  • 28
    • 33644870131 scopus 로고    scopus 로고
    • Development of microsatellite markers in the toxic dinoflagellate Alexandrium catenella (Dinophyceae)
    • Nagai, S., Sekino, M., Matsuyama, Y. & Itakura, S. 2006a. Development of microsatellite markers in the toxic dinoflagellate Alexandrium catenella (Dinophyceae). Mol. Ecol. Notes 6:120-2.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 120-122
    • Nagai, S.1    Sekino, M.2    Matsuyama, Y.3    Itakura, S.4
  • 29
    • 35848943670 scopus 로고    scopus 로고
    • Development of microsatellite markers in the noxious red tide-causing algae Heterocapsa circularisquama
    • Nagai, S., Yamaguchi, S., Lian, C. L., Nishitani, G., Itakura, S. & Yamaguchi, M. 2007b. Development of microsatellite markers in the noxious red tide-causing algae Heterocapsa circularisquama. Mol. Ecol. Notes 7:993-5.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 993-995
    • Nagai, S.1    Yamaguchi, S.2    Lian, C.L.3    Nishitani, G.4    Itakura, S.5    Yamaguchi, M.6
  • 30
    • 33646893088 scopus 로고    scopus 로고
    • Development of microsatellite markers in the noxious red tide-causing algae Heterosigma akashiwo (Raphidophyceae)
    • Nagai, S., Yamaguchi, S., Matsuyama, Y. & Itakura, S. 2006b. Development of microsatellite markers in the noxious red tide-causing algae Heterosigma akashiwo (Raphidophyceae). Mol. Ecol. Notes 6:477-9.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 477-479
    • Nagai, S.1    Yamaguchi, S.2    Matsuyama, Y.3    Itakura, S.4
  • 31
    • 79958765984 scopus 로고    scopus 로고
    • Paralytic shellfish poison toxification of bivalves, in association with appearance of Alexandrium catenella in Hamanako, Shizuoka Prefecture
    • Narita, H., Nakamura, N., Kubota, T., Sugiyama, K., Kageyama, T. & Noguchi, T. 1999. Paralytic shellfish poison toxification of bivalves, in association with appearance of Alexandrium catenella in Hamanako, Shizuoka Prefecture. Mycotoxins 48:9-14.
    • (1999) Mycotoxins , vol.48 , pp. 9-14
    • Narita, H.1    Nakamura, N.2    Kubota, T.3    Sugiyama, K.4    Kageyama, T.5    Noguchi, T.6
  • 32
    • 67349101574 scopus 로고    scopus 로고
    • Development of microsatellite markers in the marine phytoplankton Karenia mikimotoi (Dinophyceae)
    • Nishitani, G., Nagai, S., Lian, C. L., Sakiyama, S., Oohashi, A. & Miyamura, K. 2009. Development of microsatellite markers in the marine phytoplankton Karenia mikimotoi (Dinophyceae). Conserv. Genet. 10:713-5.
    • (2009) Conserv. Genet. , vol.10 , pp. 713-715
    • Nishitani, G.1    Nagai, S.2    Lian, C.L.3    Sakiyama, S.4    Oohashi, A.5    Miyamura, K.6
  • 37
    • 0028092436 scopus 로고
    • Identification of species and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). I. RFLP analysis of SSU rRNA genes
    • Scholin, C. A. & Anderson, D. M. 1994. Identification of species and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). I. RFLP analysis of SSU rRNA genes. J. Phycol. 30:744-54.
    • (1994) J. Phycol. , vol.30 , pp. 744-754
    • Scholin, C.A.1    Anderson, D.M.2
  • 38
    • 0028312266 scopus 로고
    • Identification of group and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). II. Sequence analysis of a fragment of the LSU rRNA gene
    • Scholin, C. A., Herzog, A., Sogin, M. & Anderson, D. M. 1994. Identification of group and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). II. Sequence analysis of a fragment of the LSU rRNA gene. J. Phycol. 30:999-1011.
    • (1994) J. Phycol. , vol.30 , pp. 999-1011
    • Scholin, C.A.1    Herzog, A.2    Sogin, M.3    Anderson, D.M.4
  • 39
    • 0007926996 scopus 로고
    • The seasonal appearance of red time organisms and flagellates in the southern Harima-Nada, Inland Sea of Seto
    • Yoshimatsu, S. & Ono, C. 1986. The seasonal appearance of red time organisms and flagellates in the southern Harima-Nada, Inland Sea of Seto. Bull. Akashiwo Res. Inst. Kagawa Pref. 2:1-42.
    • (1986) Bull. Akashiwo Res. Inst. Kagawa Pref. , vol.2 , pp. 1-42
    • Yoshimatsu, S.1    Ono, C.2
  • 40
    • 84989642282 scopus 로고
    • Alexandrium satoanum sp. nov. (Dinophyceae) from Matoya Bay, central Japan
    • Yuki, K. & Fukuyo, Y. 1992. Alexandrium satoanum sp. nov. (Dinophyceae) from Matoya Bay, central Japan. J. Phycol. 28:395-9.
    • (1992) J. Phycol. , vol.28 , pp. 395-399
    • Yuki, K.1    Fukuyo, Y.2


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