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Volumn 50, Issue 9, 2012, Pages 2881-2887

Field monitoring of avian influenza viruses: Whole-genome sequencing and tracking of neuraminidase evolution using 454 pyrosequencing

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; HEMAGGLUTININ; SIALIDASE; VIRUS RNA;

EID: 84865179843     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01142-12     Document Type: Article
Times cited : (29)

References (24)
  • 1
    • 80055028995 scopus 로고    scopus 로고
    • Transmission dynamics of low pathogenicity avian influenza infections in Turkey flocks
    • Comin A, Klinkenberg D, Marangon S, Toffan A, Stegeman A. 2011. Transmission dynamics of low pathogenicity avian influenza infections in Turkey flocks. PLoS One 6:e26935.
    • (2011) PLoS One , vol.6
    • Comin, A.1    Klinkenberg, D.2    Marangon, S.3    Toffan, A.4    Stegeman, A.5
  • 4
    • 30344461926 scopus 로고    scopus 로고
    • Comparison of in vitro replication features of H7N3 influenza viruses from wild ducks and turkeys: Potential implications for interspecies transmission
    • DOI 10.1099/vir.0.81187-0
    • Giannecchini S, et al. 2006. Comparison of in vitro replication features of H7N3 influenza viruses from wild ducks and turkeys: potential implications for interspecies transmission. J. Gen. Virol. 87:171-175. (Pubitemid 43056955)
    • (2006) Journal of General Virology , vol.87 , Issue.1 , pp. 171-175
    • Giannecchini, S.1    Campitelli, L.2    Calzoletti, L.3    De Marco, M.A.4    Azzi, A.5    Donatelli, I.6
  • 6
    • 77955402078 scopus 로고    scopus 로고
    • Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing
    • Hedskog C, et al. 2010. Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing. PLoS One 5:e11345.
    • (2010) PLoS One , vol.5
    • Hedskog, C.1
  • 7
    • 0035559445 scopus 로고    scopus 로고
    • Universal primer set for the full-length amplification of all influenza A viruses
    • DOI 10.1007/s007050170002
    • Hoffmann E, Stech J, Guan Y, Webster RG, Perez DR. 2001. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 146:2275-2289. (Pubitemid 34682391)
    • (2001) Archives of Virology , vol.146 , Issue.12 , pp. 2275-2289
    • Hoffmann, E.1    Stech, J.2    Guan, Y.3    Webster, R.G.4    Perez, D.R.5
  • 8
    • 84855945486 scopus 로고    scopus 로고
    • Length variations in the NA stalk of an H7N1 influenza virus have opposite effects on viral excretion in chickens and ducks
    • Hoffmann TW, et al. 2012. Length variations in the NA stalk of an H7N1 influenza virus have opposite effects on viral excretion in chickens and ducks. J. Virol. 86:584-588.
    • (2012) J. Virol. , vol.86 , pp. 584-588
    • Hoffmann, T.W.1
  • 9
    • 77958576283 scopus 로고    scopus 로고
    • Emergence of oseltamivir-resistant pandemic (H1N1) 2009 virus within 48 hours
    • Inoue M, et al. 2010. Emergence of oseltamivir-resistant pandemic (H1N1) 2009 virus within 48 hours. Emerg. Infect. Dis. 16:1633-1636.
    • (2010) Emerg. Infect. Dis. , vol.16 , pp. 1633-1636
    • Inoue, M.1
  • 10
    • 0036226603 scopus 로고    scopus 로고
    • BLAT: The BLAST-like alignment tool
    • Kent WJ. 2002. BLAT: the BLAST-like alignment tool. Genome Res. 12: 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 11
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 12
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence alignment/map format and SAMtools
    • Li H, et al. 2009. The Sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 13
    • 79952026584 scopus 로고    scopus 로고
    • Emergence and genetic variation of neuraminidase stalk deletions in avian influenza viruses
    • Li J, Zu Dohna H, Cardona CJ, Miller J, Carpenter TE. 2011. Emergence and genetic variation of neuraminidase stalk deletions in avian influenza viruses. PLoS One 6:e14722.
    • (2011) PLoS One , vol.6
    • Li, J.1    Zu Dohna, H.2    Cardona, C.J.3    Miller, J.4    Carpenter, T.E.5
  • 14
    • 79959341239 scopus 로고    scopus 로고
    • Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool
    • Mariette J, Noirot C, Klopp C. 2011. Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool. BMC Res. Notes 4:149.
    • (2011) BMC Res. Notes , vol.4 , pp. 149
    • Mariette, J.1    Noirot, C.2    Klopp, C.3
  • 15
    • 77950671042 scopus 로고    scopus 로고
    • Pandemic (H1N1) 2009 in breeding turkeys, Valparaiso, Chile
    • Mathieu C, et al. 2010. Pandemic (H1N1) 2009 in breeding turkeys, Valparaiso, Chile. Emerg. Infect. Dis. 16:709-711.
    • (2010) Emerg. Infect. Dis. , vol.16 , pp. 709-711
    • Mathieu, C.1
  • 16
    • 0032927194 scopus 로고    scopus 로고
    • The surface glycoproteins of H5 influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties
    • Matrosovich M, Zhou N, Kawaoka Y, Webster R. 1999. The surface glycoproteins ofH5influenza viruses isolated from humans, chickens, and wild aquatic birds have distinguishable properties. J. Virol. 73:1146-1155. (Pubitemid 29036766)
    • (1999) Journal of Virology , vol.73 , Issue.2 , pp. 1146-1155
    • Matrosovich, M.1    Zhou, N.2    Kawaoka, Y.3    Webster, R.4
  • 17
    • 66149122168 scopus 로고    scopus 로고
    • Neuraminidase stalk length and additional glycosylation of the hemagglutinin influence the virulence of influenza H5N1 viruses for mice
    • Matsuoka Y, et al. 2009. Neuraminidase stalk length and additional glycosylation of the hemagglutinin influence the virulence of influenza H5N1 viruses for mice. J. Virol. 83:4704-4708.
    • (2009) J. Virol. , vol.83 , pp. 4704-4708
    • Matsuoka, Y.1
  • 18
    • 70350486533 scopus 로고    scopus 로고
    • The role of genomics in tracking the evolution of influenza A virus
    • McHardy AC, Ben Adams B. 2009. The role of genomics in tracking the evolution of influenza A virus. PLoS Pathog. 5:e1000566.
    • (2009) PLoS Pathog. , vol.5
    • McHardy, A.C.1    Ben Adams, B.2
  • 20
    • 73849099951 scopus 로고    scopus 로고
    • A genetically engineered waterfowl influenza virus with a deletion in the stalk of the neuraminidase has increased virulence for chickens
    • Munier S, et al. 2010. A genetically engineered waterfowl influenza virus with a deletion in the stalk of the neuraminidase has increased virulence for chickens. J. Virol. 84:940-952.
    • (2010) J. Virol. , vol.84 , pp. 940-952
    • Munier, S.1
  • 21
    • 77950270914 scopus 로고    scopus 로고
    • The high susceptibility of turkeys to influenza viruses of different origins implies their importance as potential intermediate hosts
    • Pillai SPS, Pantin-Jackwood M, Yassine HM, Saif YM, Lee CW. 2010. The high susceptibility of turkeys to influenza viruses of different origins implies their importance as potential intermediate hosts. Avian Dis. 54: 522-526.
    • (2010) Avian Dis. , vol.54 , pp. 522-526
    • Pillai, S.P.S.1    Pantin-Jackwood, M.2    Yassine, H.M.3    Saif, Y.M.4    Lee, C.W.5
  • 22
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson JT, et al. 2011. Integrative genomics viewer. Nat. Biotechnol. 29:24-26.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 23
    • 78049509775 scopus 로고    scopus 로고
    • A 27-amino-acid deletion in the neuraminidase stalk supports replication of an avian H2N2 influenza A virus in the respiratory tract of chickens
    • Sorrell EM, Song H, Pena L, Perez DR. 2010. A 27-amino-acid deletion in the neuraminidase stalk supports replication of an avian H2N2 influenza A virus in the respiratory tract of chickens. J. Virol. 84:11831-11840.
    • (2010) J. Virol. , vol.84 , pp. 11831-11840
    • Sorrell, E.M.1    Song, H.2    Pena, L.3    Perez, D.R.4
  • 24
    • 67650921421 scopus 로고    scopus 로고
    • The special neuraminidase stalk-motif responsible for increased virulence and pathogenesis of H5N1 influenza A virus
    • Zhou H, et al. 2009. The special neuraminidase stalk-motif responsible for increased virulence and pathogenesis of H5N1 influenza A virus. PLoS One 4:e6277.
    • (2009) PLoS One , vol.4
    • Zhou, H.1


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