-
1
-
-
0343290667
-
The molecular information file (MIF): Core specifications of a new standard format for chemical data
-
10.1021/ci00025a009
-
FH Allen JM Barnard APF Cook SR Hall 1995 The molecular information file (MIF): core specifications of a new standard format for chemical data J Chem Inf Comput Sci 35 412 417 10.1021/ci00025a009
-
(1995)
J Chem Inf Comput Sci
, vol.35
, pp. 412-417
-
-
Allen, F.H.1
Barnard, J.M.2
Cook, A.P.F.3
Hall, S.R.4
-
2
-
-
33644847501
-
SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determinations
-
DOI 10.1002/prot.20840
-
MC Baran HN Moseley JM Aramini MJ Bayro D Monleon JY Locke GT Montelione 2006 SPINS: a laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determinations Proteins 62 843 851 10.1002/prot.20840 (Pubitemid 43364150)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.62
, Issue.4
, pp. 843-851
-
-
Baran, M.C.1
Moseley, H.N.B.2
Aramini, J.M.3
Bayro, M.J.4
Monleon, D.5
Locke, J.Y.6
Montelione, G.T.7
-
3
-
-
33847079676
-
Evaluating protein structures determined by structural genomics consortia
-
10.1002/prot.21165
-
A Bhattacharya R Tejero GT Monelione 2007 Evaluating protein structures determined by structural genomics consortia Proteins 66 778 795 10.1002/prot.21165
-
(2007)
Proteins
, vol.66
, pp. 778-795
-
-
Bhattacharya, A.1
Tejero, R.2
Monelione, G.T.3
-
5
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
DOI 10.1023/A:1008392405740
-
G Cornilescu F Delaglio A Bax 1999 Protein backbone angle restraints from searching a database for chemical shift and sequence homology J Biomol NMR 13 289 302 10.1023/A:1008392405740 (Pubitemid 29143535)
-
(1999)
Journal of Biomolecular NMR
, vol.13
, Issue.3
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
7
-
-
18444391785
-
The CCPN project: An interim report on a data model for the NMR community
-
DOI 10.1038/nsb0602-416
-
R Fogh J Ionides E Ulrich W Boucher W Vranken JP Linge M Habeck W Rieping TN Bhat J Westbrook K Henrick G Gilliland H Berman J Thornton M Nilges J Markley E Laue 2002 The CCPN project: an interim report on a data model for the NMR community Nat Struct Biol 9 416 418 10.1038/nsb0602-416 (Pubitemid 34568784)
-
(2002)
Nature Structural Biology
, vol.9
, Issue.6
, pp. 416-418
-
-
Fogh, R.1
Ionides, J.2
Ulrich, E.3
Boucher, W.4
Vranken, W.5
Linge, J.P.6
Habeck, M.7
Rieping, W.8
Bhat, T.N.9
Westbrook, J.10
Henrick, K.11
Gilliland, G.12
Berman, H.13
Thornton, J.14
Nilges, M.15
Markley, J.16
Laue, E.17
-
8
-
-
17444420842
-
A framework for scientific data modeling and automated software development
-
DOI 10.1093/bioinformatics/bti234
-
RH Fogh W Boucher WF Vranken A Pajon TJ Stevens TN Bhat J Westbrook JM Ionides ED Laue 2005 A framework for scientific data modeling and automated software development Bioinformatics 21 1678 1684 10.1093/bioinformatics/bti234 (Pubitemid 40542728)
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1678-1684
-
-
Fogh, R.H.1
Boucher, W.2
Vranken, W.F.3
Pajon, A.4
Stevens, T.J.5
Bhat, T.N.6
Westbrook, J.7
Ionides, J.M.C.8
Laue, E.D.9
-
10
-
-
4344698912
-
Automated NMR protein structure calculation
-
10.1016/S0079-6565(03)00021-9
-
P Güntert 2003 Automated NMR protein structure calculation Prog NMR Spectrosc 43 105 125 10.1016/S0079-6565(03)00021-9
-
(2003)
Prog NMR Spectrosc
, vol.43
, pp. 105-125
-
-
Güntert, P.1
-
11
-
-
0001078409
-
The STAR file: A new format for electronic data transfer and archiving
-
10.1021/ci00002a020
-
SR Hall 1991 The STAR file: a new format for electronic data transfer and archiving J Chem Inf Comput Sci 31 326 333 10.1021/ci00002a020
-
(1991)
J Chem Inf Comput Sci
, vol.31
, pp. 326-333
-
-
Hall, S.R.1
-
12
-
-
0028428137
-
The STAR file: Detailed specifications
-
10.1021/ci00019a005
-
SR Hall N Spadaccini 1994 The STAR file: detailed specifications J Chem Inf Comput Sci 34 505 508 10.1021/ci00019a005
-
(1994)
J Chem Inf Comput Sci
, vol.34
, pp. 505-508
-
-
Hall, S.R.1
Spadaccini, N.2
-
13
-
-
13644252170
-
Protein NMR recall, precision, and F-measure scores (RPF scores): Structure quality assessment measures based on information retrieval statistics
-
DOI 10.1021/ja047109h
-
YJ Huang R Powers GT Montelione 2005 Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics J Am Chem Soc 127 1665 1674 10.1021/ja047109h (Pubitemid 40229151)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.6
, pp. 1665-1674
-
-
Huang, Y.J.1
Powers, R.2
Montelione, G.T.3
-
14
-
-
34249765651
-
NMRView: A computer program for the visualization and analysis of NMR data
-
10.1007/BF00404272
-
BA Johnson RA Blebins 1994 NMRView: a computer program for the visualization and analysis of NMR data J Biomol NMR 4 603 614 10.1007/BF00404272
-
(1994)
J Biomol NMR
, vol.4
, pp. 603-614
-
-
Johnson, B.A.1
Blebins, R.A.2
-
15
-
-
34547923673
-
KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies
-
DOI 10.1007/s10858-007-9175-5
-
N Kobayashi J Iwahara S Koshiba T Tomizawa N Tochio P Güntert T Kigawa S Yokoyama 2007 KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies J Biomol NMR 39 31 52 10.1007/s10858-007-9175-5 (Pubitemid 47249693)
-
(2007)
Journal of Biomolecular NMR
, vol.39
, Issue.1
, pp. 31-52
-
-
Kobayashi, N.1
Iwahara, J.2
Koshiba, S.3
Tomizawa, T.4
Tochio, N.5
Guntert, P.6
Kigawa, T.7
Yokoyama, S.8
-
16
-
-
1442306656
-
Assignment validation software suite for the evaluation and presentation of protein resonance assignment data
-
DOI 10.1023/B:JNMR.0000015420.44364.06
-
HN Moseley G Sahota GT Montelione 2004 Assignment validation software suite for the evaluation and presentation of protein resonance assignment data J Biomol NMR 28 341 355 10.1023/B:JNMR.0000015420.44364.06 (Pubitemid 38268165)
-
(2004)
Journal of Biomolecular NMR
, vol.28
, Issue.4
, pp. 341-355
-
-
Moseley, H.N.B.1
Sahota, G.2
Montelione, G.T.3
-
17
-
-
0038407231
-
15N chemical shifts
-
DOI 10.1023/A:1023812930288
-
S Neal AM Nip H Zhang DS Wishart 2003 Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts J Biomol NMR 26 215 240 10.1023/A:1023812930288 (Pubitemid 36758442)
-
(2003)
Journal of Biomolecular NMR
, vol.26
, Issue.3
, pp. 215-240
-
-
Neal, S.1
Nip, A.M.2
Zhang, H.3
Wishart, D.S.4
-
18
-
-
78149358401
-
Straightforward and complete deposition of NMR data to the PDBe
-
10.1007/s10858-010-9439-3
-
CJ Penkett G van Ginkel S Velankar J Swaminathan EL Ulrich S Mading TJ Stevens RH Fogh A Gutmanas GJ Kleywegt K Henrick WF Vranken 2010 Straightforward and complete deposition of NMR data to the PDBe J Biomol NMR 48 85 92 10.1007/s10858-010-9439-3
-
(2010)
J Biomol NMR
, vol.48
, pp. 85-92
-
-
Penkett, C.J.1
Van Ginkel, G.2
Velankar, S.3
Swaminathan, J.4
Ulrich, E.L.5
Mading, S.6
Stevens, T.J.7
Fogh, R.H.8
Gutmanas, A.9
Kleywegt, G.J.10
Henrick, K.11
Vranken, W.F.12
-
19
-
-
0026223896
-
A relational database for sequence-specific protein NMR data
-
10.1007/BF01875516
-
BR Seavey EA Farr WM Westler JL Markley 1991 A relational database for sequence-specific protein NMR data J Biomol NMR 1 217 236 10.1007/BF01875516
-
(1991)
J Biomol NMR
, vol.1
, pp. 217-236
-
-
Seavey, B.R.1
Farr, E.A.2
Westler, W.M.3
Markley, J.L.4
-
20
-
-
34547179849
-
Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology
-
DOI 10.1007/s10858-007-9166-6
-
Y Shen A Bax 2007 Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology J Biomol NMR 38 289 302 10.1007/s10858-007-9166-6 (Pubitemid 47108511)
-
(2007)
Journal of Biomolecular NMR
, vol.38
, Issue.4
, pp. 289-302
-
-
Shen, Y.1
Bax, A.2
-
21
-
-
77956478902
-
SPARTA+: A modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network
-
10.1007/s10858-010-9433-9
-
Y Shen A Bax 2010 SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network J Biomol NMR 48 13 22 10.1007/s10858-010-9433-9
-
(2010)
J Biomol NMR
, vol.48
, pp. 13-22
-
-
Shen, Y.1
Bax, A.2
-
22
-
-
42449146665
-
Consistent blind protein structure generation from NMR chemical shift data
-
DOI 10.1073/pnas.0800256105
-
Y Shen L Oliver F Delaglio P Rossi J Aramini G Liu A Eletsky Y Wu KK Singarapu A Lemak A Ignatchenko H Cheryl CH Arrowsmith T Szyperski T Gaetano GT Montelione D Baker A Bax 2008 Consistent blind protein structure generation from NMR chemical shift data Proc Natl Acad Sci USA 105 4685 4690 2008PNAS..105.4685S 10.1073/pnas.0800256105 (Pubitemid 351753807)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.12
, pp. 4685-4690
-
-
Shen, Y.1
Lange, O.2
Delaglio, F.3
Rossi, P.4
Aramini, J.M.5
Liu, G.6
Eletsky, A.7
Wu, Y.8
Singarapu, K.K.9
Lemak, A.10
Ignatchenko, A.11
Arrowsmith, C.H.12
Szyperski, T.13
Montelione, G.T.14
Baker, D.15
Bax, A.16
-
23
-
-
68349093958
-
TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
-
10.1007/s10858-009-9333-z
-
Y Shen F Delaglio G Cornilescu A Bax 2009 TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts J Biomol NMR 44 213 223 10.1007/s10858-009-9333-z
-
(2009)
J Biomol NMR
, vol.44
, pp. 213-223
-
-
Shen, Y.1
Delaglio, F.2
Cornilescu, G.3
Bax, A.4
-
24
-
-
0024572653
-
Creation of a nuclear magnetic resonance data repository and literature database
-
EL Ulrich JL Markley Y Kyogoku 1989 Creation of a nuclear magnetic resonance data repository and literature database Protein Seq Data Anal 2 23 37
-
(1989)
Protein Seq Data Anal
, vol.2
, pp. 23-37
-
-
Ulrich, E.L.1
Markley, J.L.2
Kyogoku, Y.3
-
25
-
-
38549138986
-
BioMagResBank
-
DOI 10.1093/nar/gkm957
-
EL Ulrich H Akutsu JF Doreleijers Y Harano YE Ioannidis J Lin M Livny S Mading D Maziuk Z Miller E Nakatani CF Schulte DE Tolmie R Kent Wenger H Yao JL Markley 2008 BioMagResBank Nucleic Acids Res 36 D402 D408 10.1093/nar/gkm957 (Pubitemid 351149757)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Ulrich, E.L.1
Akutsu, H.2
Doreleijers, J.F.3
Harano, Y.4
Ioannidis, Y.E.5
Lin, J.6
Livny, M.7
Mading, S.8
Maziuk, D.9
Miller, Z.10
Nakatani, E.11
Schulte, C.F.12
Tolmie, D.E.13
Kent Wenger, R.14
Yao, H.15
Markley, J.L.16
-
26
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
DOI 10.1002/prot.20449
-
WF Vranken W Boucher TJ Stevens RH Fogh A Pajon M Llinas EL Ulrich JL Markley J Ionides ED Laue 2005 The CCPN data model for NMR spectroscopy: development of a software pipeline Proteins 59 687 696 10.1002/prot.20449 (Pubitemid 40695845)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.59
, Issue.4
, pp. 687-696
-
-
Vranken, W.F.1
Boucher, W.2
Stevens, T.J.3
Fogh, R.H.4
Pajon, A.5
Llinas, M.6
Ulrich, E.L.7
Markley, J.L.8
Ionides, J.9
Laue, E.D.10
-
27
-
-
67349267665
-
13C secondary chemical shifts and its application to nitrogen chemicalshift re-referencing
-
10.1007/s10858-009-9324-0
-
13C secondary chemical shifts and its application to nitrogen chemicalshift re-referencing J Biomol NMR 44 95 99 10.1007/s10858-009-9324-0
-
(2009)
J Biomol NMR
, vol.44
, pp. 95-99
-
-
Wang, L.1
Markley, J.L.2
-
28
-
-
23144462958
-
Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications
-
DOI 10.1007/s10858-005-1717-0
-
L Wang HR Eghbalnia A Bahrami JL Markley 2005 Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications J Biomol NMR 44 13 22 1096.90537 10.1007/s10858-005-1717-0 (Pubitemid 41086463)
-
(2005)
Journal of Biomolecular NMR
, vol.32
, Issue.1
, pp. 13-22
-
-
Wang, L.1
Eghbalnia, H.R.2
Bahrami, A.3
Markley, J.L.4
-
29
-
-
77954688894
-
A probabilistic approach for validating protein NMR chemical shift assignments
-
10.1007/s10858-010-9407-y
-
B Wang Y Wang DS Wishart 2010 A probabilistic approach for validating protein NMR chemical shift assignments J Biomol NMR 47 85 99 10.1007/s10858-010-9407-y
-
(2010)
J Biomol NMR
, vol.47
, pp. 85-99
-
-
Wang, B.1
Wang, Y.2
Wishart, D.S.3
-
30
-
-
48449095850
-
CS23D: A web server for rapid protein structure generation using NMR chemical shifts and sequence data
-
10.1093/nar/gkn305
-
DS Wishart D Arndt M Berjanskii P Tang J Zhou G Lin 2008 CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data Nucleic Acids Res 36 W496 W502 10.1093/nar/gkn305
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Wishart, D.S.1
Arndt, D.2
Berjanskii, M.3
Tang, P.4
Zhou, J.5
Lin, G.6
-
31
-
-
0033762813
-
Structural genomics projects in Japan
-
10.1038/80712
-
S Yokoyama H Hirota T Kigawa T Yabuki M Shirouzu T Terada Y Ito Y Matsuo Y Kuroda Y Nishimura Y Kyogoku K Miki R Masui S Kuramitsu 2000 Structural genomics projects in Japan Nat Struct Biol 7 943 945 10.1038/80712
-
(2000)
Nat Struct Biol
, vol.7
, pp. 943-945
-
-
Yokoyama, S.1
Hirota, H.2
Kigawa, T.3
Yabuki, T.4
Shirouzu, M.5
Terada, T.6
Ito, Y.7
Matsuo, Y.8
Kuroda, Y.9
Nishimura, Y.10
Kyogoku, Y.11
Miki, K.12
Masui, R.13
Kuramitsu, S.14
|