Phylogenetic analysis and expression patterns of p16 and p19 in Paracentrotus lividus embryos

Development Genes and Evolution

Volumn 222, Issue 4, 2012, Pages 245-251

  Costa, Caterina ^a   Karakostis, Konstantinos ^a   Zito, Francesca ^a   Matranga, Valeria ^a  

^a CNR   (Italy)

Author keywords

Biomineral; Development; Primary mesenchyme cells; Sea urchin; Skeletogenesis

Indexed keywords

MESSENGER RNA; PROTEIN P16; PROTEIN P19;

ARTICLE; BIOMINERALIZATION; BONE CELL; CONTROLLED STUDY; DEVELOPMENTAL STAGE; EMBRYO; EMBRYO DEVELOPMENT; GASTRULA; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; LYTECHINUS; LYTECHINUS VARIEGATUS; MAMMAL; MESENCHYME; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; P16 GENE; P19 GENE; PARACENTROTUS; PARACENTROTUS LIVIDUS; PHYLOGENY; PRIORITY JOURNAL; RNA GENE; SEQUENCE HOMOLOGY; SPECIES COMPARISON; SYNCYTIUM; TRANSCRIPTION REGULATION;

AMINO ACID SEQUENCE; ANIMALS; EMBRYO, NONMAMMALIAN; EMBRYONIC DEVELOPMENT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MOLECULAR SEQUENCE DATA; PARACENTROTUS; PHYLOGENY; PROTEINS; SEQUENCE ALIGNMENT;

ECHINOIDEA; LYTECHINUS VARIEGATUS; MAMMALIA; PARACENTROTUS LIVIDUS; PLUTEUS; STRONGYLOCENTROTUS PURPURATUS;

EID: 84865128240     PISSN: 0949944X     EISSN: 1432041X     Source Type: Journal    
DOI: 10.1007/s00427-012-0405-9     Document Type: Article

References (29)

1. Addadi L, Weiner S (1985) Interactions between acidic proteins and crystals: stereochemical requirements in biomineralization. Proc Natl Acad Sci U S A 82:4110-4114 (Pubitemid 15052838)
2. Addadi L, Berman A, Oldak JM, Weiner S (1989) Structural and stereochemical relations between acidic macromolecules of organic matrices and crystals. Connect Tissue Res 21:127-134
3. Alvares K, Dixit SN, Lux E, Veis A (2009) Echinoderm phosphorylated matrix proteins UTMP16 and UTMP19 have different functions in sea urchin. J Biol Chem 284:26149-26160
4. Cheers MS, Ettensohn CA (2005) P16 is an essential regulator of skeletogenesis in the sea urchin embryo. Dev Biol 283:384-396 (Pubitemid 40977957)
5. Chu X, Jiang W, Zhang Z, Yan Y, Pan H, Xu X, Tang R (2011) Unique roles of acidic amino acids in phase transformation of calcium phosphates. J Phys Chem B 115:1151-1157
6. Costa C, Cavalcante C, Zito F, Yokota Y, Matranga V (2010) Phylogenetic analysis and homology modelling of Paracentrotus lividus nectin. Mol Divers 14:653-665
7. Fu G, Valiyaveettil S, Wopenka B, Morse DE (2005) CaCO3 biomineralization: acidic 8-kDa proteins isolated from aragonitic abalone shell nacre can specifically modify calcite crystal morphology. Biomacromolecules 6:1289-1298 (Pubitemid 40775045)
8. Gericke A, Qin C, Sun Y, Redfern R, Redfern D, Fujimoto Y, Taleb H, Butler WT, Boskey AL (2010) Different forms of DMP1 play distinct roles in mineralization. J Dent Res 89:355-359
9. Hodor PG, Ettensohn CA (1998) The dynamics and regulation of mesenchymal cell fusion in the sea urchin embryo. Dev Biol 199:111-124 (Pubitemid 28317914)
10. Illies MR, Peeler MT, Dechtiaruk AM, Ettensohn CA (2002) Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus. Dev Genes Evol 212:419-431 (Pubitemid 36075560)
11. Kiyomoto M, Zito F, Costa C, Poma V, Sciarrino S, Matranga V (2007) Skeletogenesis by transfated secondary mesenchyme cells is dependent on extracellular matrix-ectoderm interactions in Paracentrotus lividus sea urchin embryos. Dev Growth Differ 49:731-741 (Pubitemid 350045508)
12. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Methods 25:402-408 (Pubitemid 34164012)
13. Livingston BT, Killian CE,Wilt F, Cameron A, LandrumMJ, Ermolaeva O, SapojnikovV,Maglott DR, BuchananAM, EttensohnCA (2006) A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus. Dev Biol 300:335-348 (Pubitemid 44826988)
14. MacDougall M, Gu TT, Luan X, Simmons D, Chen J (1998) Identification of a novel isoform of mouse dentin matrix protein: spatial expression in mineralized tissues. J Bone Miner Res 13:422-431 (Pubitemid 28146225)
15. Mann K, Wilt FH, Poustka AJ (2010) Proteomic analysis of sea urchin (Strongylocentrotus purpuratus) spicule matrix. Proteome Sci 8:33
16. Marin F, Luquet G (2008) Unusually acidic proteins in biomineralization. In: Bäuerlein E (ed) Handbook of biomineralization: biological aspects and structure formation. Wiley, Weinheim. doi:10.1002/9783527619443.ch16
17. Matranga V, Bonaventura R, Costa C, Karakostis K, Pinsino A, Russo R, Zito F (2011) Echinoderms as blueprints for biocalcification: regulation of skeletogenic genes and matrices. Prog Mol Subcell Biol 52:225-248
18. Okazaki K (1965) Skeleton formation of sea urchin larvae. V. Continuous observation of the process of matrix formation. Exp Cell Res 40:585-596
19. Prasad M, Butler WT, Qin C (2010) Dentin sialophosphoprotein in biomineralization. Connect Tissue Res 51:404-417
20. Qin C, D'Souza R, Feng JQ (2007) Dentin matrix protein 1 (DMP1): new and important roles for biomineralization and phosphate homeostasis. J Dent Res 86:1134-1141
21. Rizzo F, Fernandez-Serra M, Squarzoni P, Archimandritis A, Arnone MI (2006) Identification and developmental expression of the ets gene family in the sea urchin (Strongylocentrotus purpuratus). Dev Biol 300:35-48 (Pubitemid 44826993)
22. Sea Urchin Genome Sequencing Consortium (2006) The genome of the sea urchin Strongylocentrotus purpuratus. Science 314:941-952
23. Veis A, Sabsay B, Wu CB (1991) Phosphoproteins as mediators of biomineralization. In: Comstock J (ed) Surface reactive peptides and polymers. ACS Symp Ser 444:1-12
24. Wang DG, Britten RJ, Davidson EH (1995) Maternal and embryonic provenance of a sea urchin embryo transcription factor, SpZ12-1. Mol Mar Biol Biotechnol 4:148-153
25. Weiner S, Addadi L (2011) Crystallization pathways in biomineralization. Annu Rev Mater Res 41:21-40
26. Wilt FH (2005) Developmental biology meets materials science: morphogenesis of biomineralized structures. Dev Biol 280:15-25 (Pubitemid 40342738)
27. Wojtas M, Dobryszycki P, Ożyhar A (2012) Intrinsically disordered proteins in biomineralization. In: Seto J (ed) Advanced topics in biomineralization. Intech, pp 1-32. ISBN: 978-953-51-0045-4
28. Zhu X, Mahairas G, Illies M, Cameron RA, Davidson EH, Ettensohn CA (2001) A large-scale analysis of mRNAs expressed by primary mesenchyme cells of the sea urchin embryo. Development 128:2615-2627 (Pubitemid 32685102)
29. Zito F, Matranga V (2009) Secondary mesenchyme cells as potential stem cells of the sea urchin embryo. Stem cells in marine organisms, 187-213. doi:10.1007/978-90-481-2767-2-8