The structure of the BfrB-Bfd complex reveals protein-protein interactions enabling iron release from bacterioferritin

Journal of the American Chemical Society

Volumn 134, Issue 32, 2012, Pages 13470-13481

  Yao, Huili ^a   Wang, Yan ^a   Lovell, Scott ^a   Kumar, Ritesh ^a   Ruvinsky, Anatoly M ^a   Battaile, Kevin P ^b   Vakser, Ilya A ^a   Rivera, Mario ^a  

^a UNIVERSITY OF KANSAS   (United States)

^b HAUPTMAN WOODWARD MEDICAL RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOFERRITIN; ELECTRON TRANSFER; IRON HOMEOSTASIS; IRON RELEASE; METAL BINDING DOMAIN; PATHOGENIC BACTERIUM; PROTEIN INTERACTION; PROTEIN-PROTEIN INTERACTIONS; PSEUDOMONAS AERUGINOSA; SPECIFIC RECOGNITION; X RAY CRYSTAL STRUCTURES;

BACTERIA; IRON; MOLECULES; PHYSIOLOGY; PORPHYRINS; PROTEINS;

IRON COMPOUNDS;

BACTERIOFERRITIN; FERREDOXIN; IRON;

ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; ELECTRON TRANSPORT; ENZYME ACTIVITY; HOMEOSTASIS; IRON KINETICS; METAL BINDING; MOLECULAR RECOGNITION; NONHUMAN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PSEUDOMONAS AERUGINOSA; X RAY;

BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; CYTOCHROME B GROUP; FERREDOXINS; FERRITINS; IRON; MODELS, MOLECULAR; PROTEIN FOLDING; PSEUDOMONAS AERUGINOSA;

EID: 84865118837     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja305180n     Document Type: Article

References (55)

1. Theil, E. C.; Goss, D. J. Chem. Rev. 2009, 109, 4568-4579
2. Andrews, S. C.; Robinson, A. K.; Rodríguez-Quiñones, F. FEMS Microbiol. Rev. 2003, 27, 215-237
3. Neilands, J. B. Biol. Met. 1991, 4, 1-6
4. Andrews, S. C. Biochim. Biophys. Acta 2010, 1800, 691-705
5. Theil, E. C. Curr. Opin. Chem. Biol. 2011, 15, 304-311
6. Liu, X.; Theil, E. C. Acc. Chem. Res. 2005, 38, 167-175
7. Tosha, T.; Behera, R. K.; Ng, H. L.; Bhattasali, O.; Alber, T.; Theil, E. C. J. Biol. Chem. 2012, 287, 13016-13025
8. Bertini, I.; Lalli, D.; Mangani, S.; Pozzi, C.; Rosa, C.; Theil, E. C.; Turano, P. J. Am. Chem. Soc. 2012, 134, 6169-6176
9. Turano, P.; Lalli, D.; Felli, I. C.; Theil, E. C.; Bertinin, I. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 545-550
10. Weeratunga, S.; Gee, C. E.; Lovell, S.; Zeng, Y.; Woodin, C. L.; Rivera, M. Biochemistry 2009, 48, 7420-7431
11. Garg, R. P.; Vargo, C. J.; Cui, X.; Kurtz, D. M. J. Biochemistry 1996, 35, 6297-6301
12. Quail, M. A.; Jordan, P.; Grogan, J. M.; Butt, J. N.; Lutz, M.; Thomson, A. J.; Andrews, S. C.; Guest, J. R. Biochem. Biophys. Res. Commun. 1996, 229, 635-642
13. Andrews, S. C.; Le Brun, N. E.; Barynin, V.; Thomson, A. J.; Moore, G. R.; Guest, J. R.; Harrison, P. M. J. Biol. Chem. 1995, 270, 23268-23274
14. Yasmin, S.; Andrews, S. C.; Moore, G. R.; Le Brun, N. E. J. Biol. Chem. 2011, 286, 3473-3483
15. Reddy, P. V.; Puri, R. V.; Khera, A.; Tyagi, A. K. J. Bacteriol. 2012, 194, 567-575
16. Palmer, K. L.; Mashburn, L. M.; Singh, P. K.; Whiteley, M. J. Bacteriol. 2005, 187, 5267-5277
17. Pier, G. B. Curr. Opin. Microbiol. 2002, 5, 81-86
18. Andrews, S. C.; Harrison, P. M.; Guest, J. R. J. Bacteriol. 1989, 171, 3940-3947
19. Wang, A.; Zeng, Y.; Han, H.; Weeratunga, S.; Morgan, B. N.; Moënne-Loccoz, P.; Schönbrunn, E.; Rivera, M. Biochemistry 2007, 46, 12198-12211
20. Ochsner, U. A.; Wilderman, P. J.; Vasil, A. I.; Vasil, M. L. Mol. Microbiol. 2002, 45, 1277-1287
21. Palma, M.; Worgall, S.; Quadri, L. E. N. Arch. Microbiol. 2003, 180, 374-379
22. Wang, A.; Rodríguez, J. C.; Han, H.; Schönbrunn, E.; Rivera, M. Biochemistry 2008, 47, 8080-8093
23. Moore, G. R.; Kadir, H. A.; Al-Massad, K.; Le Brun, N. E.; Thomson, A. J.; Greenwood, C.; Keen, J. N.; Findlay, J. B. C. Biochem. J. 1994, 304, 493-497
24. Ma, J.-F.; Ochsner, U. A.; Klotz, M. G.; Nanayakkara, V. K.; Howell, M. L.; Johnson, Z.; Posey, J. E.; Vasil, M. L.; Monaco, J. J.; Hassett, D. J. J. Bacteriol. 1999, 181, 3730-3742
25. Weeratunga, S.; Lovell, S.; Yao, H.; Battaile, K. P.; Fischer, C. J.; Gee, C. E.; Rivera, M. Biochemistry 2010, 49, 1160-1175
26. Yao, H.; Jepkorir, G.; Lovell, S.; Nama, P. V.; Weeratunga, S. K.; Battaille, K. P.; Rivera, M. Biochemistry 2011, 50, 5236-5248
27. Kabsch, W. J. Appl. Crystallogr. 1988, 21, 67-72
28. Evans, P. R. Acta Crystallogr. 2011, D67, 282-292
29. Matthews, B. W. J. Mol. Biol. 1968, 33, 491-497
30. McCoy, A. J.; Grosse-Kunstleve, R. W.; Adams, P. D.; Winn, M. D.; Storoni, L. C.; Read, R. J. J. Appl. Crystallogr. 2007, 40, 658-674
31. Adams, P. D.; Afonine, P. V.; Brunkózci, G.; Chen, V. B.; Davis, I. W.; Echols, N.; Headd, J. J.; Hung, L.-W.; Kapral, G. J.; Grosse-Kunstleve, R. W.; McCoy, A. J.; Moriarty, N. W.; Oeffner, R.; Read, R. J.; Richardson, D. C.; Richardson, J. S.; Terwilliger, T. C.; Zwart, P. H. Acta Crystallogr. 2010, D66, 213-221.
32. Emsley, P.; Lohkamp, B.; Scott, W. G.; Cowan, K. Acta Crystallogr. 2010, D66, 12-21
33. Chen, V. B.; Arendall, W. B. r.; Headd, J. J.; Keedy, D. A.; Immormino, R. M.; Kapral, G. J.; Murray, L. W.; Richardson, J. S.; Richardson, D. C. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2010, 66, 486-501
34. Liu, H.-L.; Zhou, H.-N.; Xing, W.-M.; Zhao, J.-F.; Li, S.-X.; Huang, J.-F.; Bi, R.-C. FEBS Lett. 2004, 573, 93-98
35. Swartz, L.; Kuchinskas, M.; Li, H.; Poulos, T. L.; Lanzilotta, W. N. Biochemistry 2006, 45, 4421-4428
36. Macedo, S.; Romão, C. V.; Mitchell, E.; Matias, P. M.; Liu, M. Y.; Xavier, A. V.; LeGall, J.; Teixeira, M.; Lindley, P.; Carrondo, M. A. Nat. Struct. Biol. 2003, 10, 285-290
37. Punta, M.; Coggill, P. C.; Eberhardt, R. Y.; Mistry, J.; Tate, J.; Boursnell, C.; Pang, N.; Forslund, K.; Ceric, G.; Clements, J.; Heger, A.; Holm, L.; Sonnhammer, E. L. L.; Eddy, S. R.; Bateman, A.; Finn, R. D. Nucleic Acids Res. 2012, 40, D290-D301
38. Roy, A.; Yang, J.; Zhang, Y. Nucleic Acids Res. 2012, 40, W471-W477
39. Holm, L.; Rosenström, P. Nucleic Acids Res. 2010, 38, W545-W549
40. Krissinel, E.; Henrick, K. Acta Crystallogr. 2004, D60, 2256-2268
41. Ida, K.; Tomotaka, M.; Suzuki, H. Biochem. Biophys. Res. Commun. 2005, 333, 359-366
42. Tsuge, H.; Kawakami, R.; Sakuraba, H.; Ago, H.; Miyano, M.; Aki, K.; Katunuma, N.; Ohshima, T. J. Biol. Chem. 2005, 280, 31045-31049
43. Sazinsky, M. H.; LeMoine, B.; Orofino, M.; Davydov, R.; Bencze, K. Z.; Stemmler, T. L.; Hoffman, B. M.; Argüello, J. M.; Rosenzweig, A. C. J. Biol. Chem. 2007, 282, 25950-25959
44. Ruvinsky, A. M.; Vakser, I. A. J. Chem. Phys. 2010, 133, 155101
45. Beratan, D. N.; Onuchic, J. N.; Winkler, J. R.; Gray, H. B. Science 1992, 258, 1740-1741
46. Reiner, A.; Wildermann, D.; Fischer, G.; Kiefhaber, T. J. Am. Chem. Soc. 2008, 130, 8079-8084
47. Topham, R.; Goger, M.; Pearce, K.; Schultz, P. Biochem. J. 1989, 261, 137-143
48. Jones, T.; Spencer, R.; Walsh, C. Biochemistry 1978, 17, 4011-4017
49. Richards, T. D.; Pitts, K. R.; Watt, G. D. J. Inorg. Biochem. 1996, 61, 1-13
50. Funk, F.; Lenders, J. P.; Crichton, R. R.; Schneider, W. Eur. J. Biochem. 1985, 152, 167-172
51. Takagi, H.; Shi, D.; Ha, Y.; Allewell, N. M.; Theil, E. C. J. Biol. Chem. 1998, 273, 18685-18688
52. Evans, P. R. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2011, 67, 282-292
53. Evans, P. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2006, 62, 72-82
54. Diederichs, K.; Karplus, P. A. Nat. Struct. Biol. 1997, 4, 269-275
55. Weiss, M. S. J. Appl. Crystallogr. 2001, 34, 130-135