메뉴 건너뛰기




Volumn 76, Issue 5, 2012, Pages 387-401

Low-Density Lipoprotein Receptor Gene Familial Hypercholesterolemia Variant Database: Update and Pathological Assessment

Author keywords

Familial hypercholesterolemia; in silico pathogenicity prediction; LDLR; Locus specific variant database

Indexed keywords

LOW DENSITY LIPOPROTEIN RECEPTOR;

EID: 84865076877     PISSN: 00034800     EISSN: 14691809     Source Type: Journal    
DOI: 10.1111/j.1469-1809.2012.00724.x     Document Type: Article
Times cited : (175)

References (36)
  • 2
    • 66249138829 scopus 로고    scopus 로고
    • Genetic diagnosis of familial hypercholesterolaemia: The importance of functional analysis of potential splice-site mutations
    • Investigators of Portuguese FH Study Familial hypercholesterolaemia in Portugal. () .
    • Bourbon, M., Alves, A. C., Medeiros, A. M., Silva, S., Soutar, A. K., & Investigators of Portuguese FH Study Familial hypercholesterolaemia in Portugal. (2009) Genetic diagnosis of familial hypercholesterolaemia: The importance of functional analysis of potential splice-site mutations. J Med Genet 46, 352-357.
    • (2009) J Med Genet , vol.46 , pp. 352-357
    • Bourbon, M.1    Alves, A.C.2    Medeiros, A.M.3    Silva, S.4    Soutar, A.K.5
  • 3
    • 35248840932 scopus 로고    scopus 로고
    • A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing
    • Bourbon, M., Sun, X-.M., & Soutar, A. K. (2007) A rare polymorphism in the low density lipoprotein (LDL) gene that affects mRNA splicing. Atherosclerosis 195, e17-e20.
    • (2007) Atherosclerosis , vol.195
    • Bourbon, M.1    Sun, X.-M.2    Soutar, A.K.3
  • 5
    • 58149187899 scopus 로고    scopus 로고
    • The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies
    • Cuff, A. L., Sillitoe, I., Lewis, T., Redfern, O. C., Garratt, R., Thornton, J., & Orengo, C. A. (2009) The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucl Acids Res 37, D310-D314.
    • (2009) Nucl Acids Res , vol.37
    • Cuff, A.L.1    Sillitoe, I.2    Lewis, T.3    Redfern, O.C.4    Garratt, R.5    Thornton, J.6    Orengo, C.A.7
  • 6
    • 0023033288 scopus 로고
    • Deletion of clustered O-linked carbohydrates does not impair function of low density lipoprotein receptor in transfected fibroblasts
    • Davis, C. G., Elhammer, A., Russell, D. W., Schneider, W. J., Kornfeld, S., Brown, M. S., & Goldstein, J. L. (1986) Deletion of clustered O-linked carbohydrates does not impair function of low density lipoprotein receptor in transfected fibroblasts. J Biol Chem 261, 2828-2838.
    • (1986) J Biol Chem , vol.261 , pp. 2828-2838
    • Davis, C.G.1    Elhammer, A.2    Russell, D.W.3    Schneider, W.J.4    Kornfeld, S.5    Brown, M.S.6    Goldstein, J.L.7
  • 7
    • 43449107670 scopus 로고    scopus 로고
    • Silent exonic mutations in the low-density lipoprotein receptor gene that cause familial hypercholesterolemia by affecting mRNA splicing
    • Defesche, J. C., Schuurman, E. J., Klaaijsen, L. N., Khoo, K. L., Wiegman, A., & Stalenhoef, A. F. (2008) Silent exonic mutations in the low-density lipoprotein receptor gene that cause familial hypercholesterolemia by affecting mRNA splicing. Clin Genet 73, 573-578.
    • (2008) Clin Genet , vol.73 , pp. 573-578
    • Defesche, J.C.1    Schuurman, E.J.2    Klaaijsen, L.N.3    Khoo, K.L.4    Wiegman, A.5    Stalenhoef, A.F.6
  • 9
    • 22844452823 scopus 로고    scopus 로고
    • LOVD: Easy creation of a locus-specific sequence variation database using an "LSDB-in-a-Box" approach
    • Fokkema, I. F. A. C., Den Dunnen, J. T., & Taschner, P. E. M. (2005) LOVD: Easy creation of a locus-specific sequence variation database using an "LSDB-in-a-Box" approach. Hum Mutat 26, 63-68.
    • (2005) Hum Mutat , vol.26 , pp. 63-68
    • Fokkema, I.F.A.C.1    Den Dunnen, J.T.2    Taschner, P.E.M.3
  • 11
    • 0002230202 scopus 로고
    • Familial hypercholesterolemia
    • (eds. C. R. Scriver, A. L. Beaudet, W. S. Sly, amp; D. Valle) -. New York: McGraw-Hill.
    • Goldstein, J. L. & Brown, M. S. (1989) Familial hypercholesterolemia. In: The metabolic basis of inherited disease (eds. C. R. Scriver, A. L. Beaudet, W. S. Sly, & D. Valle ), pp. 1215-1250. New York: McGraw-Hill.
    • (1989) The metabolic basis of inherited disease , pp. 1215-1250
    • Goldstein, J.L.1    Brown, M.S.2
  • 12
    • 0020348324 scopus 로고
    • Biochemical genetics of LDL receptor mutations in familial hypercholesterolemia
    • (eds. B. Bonne-Tamir, T. Cohen, amp; R. M. Goodman) -. New York: Alan R. Liss.
    • Goldstein, J. L., Kottke, B. A., & Brown, M. S. (1982) Biochemical genetics of LDL receptor mutations in familial hypercholesterolemia. In: Human genetics, part B: Medical aspects (eds. B. Bonne-Tamir, T. Cohen, & R. M. Goodman ), pp. 161-176. New York: Alan R. Liss.
    • (1982) Human genetics, part B: Medical aspects , pp. 161-176
    • Goldstein, J.L.1    Kottke, B.A.2    Brown, M.S.3
  • 13
    • 0035197537 scopus 로고    scopus 로고
    • Low-density lipoprotein receptor gene (LDLR) worldwide website in familial hypercholesterolaemia: Update, new features and mutation analysis
    • Heath, K. E., Gahan, M., Whittall, R. A., & Humphries, S. E. (2001) Low-density lipoprotein receptor gene (LDLR) worldwide website in familial hypercholesterolaemia: Update, new features and mutation analysis. Atherosclerosis 154, 243-246.
    • (2001) Atherosclerosis , vol.154 , pp. 243-246
    • Heath, K.E.1    Gahan, M.2    Whittall, R.A.3    Humphries, S.E.4
  • 14
    • 0029791403 scopus 로고    scopus 로고
    • Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information
    • Hebsgaard, S. M., Korning, P. G., Tolstrup, N., Engelbrecht, J., Rouze, P., & Brunak, S. (1996) Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information. Nucleic Acids Res 24, 3439-3452.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3439-3452
    • Hebsgaard, S.M.1    Korning, P.G.2    Tolstrup, N.3    Engelbrecht, J.4    Rouze, P.5    Brunak, S.6
  • 15
    • 84864602990 scopus 로고    scopus 로고
    • Cardiovascular risk in relation to functionality of sequence variants in the gene coding for the low-density lipoprotein receptor: A study among 29 365 individuals tested for 64 specific low-density lipoprotein-receptor sequence variants
    • [Epub ahead of print]
    • Huijgen, R., Kindt, I., Defesche, J. C., & Kastelein, J. J. (2012) Cardiovascular risk in relation to functionality of sequence variants in the gene coding for the low-density lipoprotein receptor: A study among 29 365 individuals tested for 64 specific low-density lipoprotein-receptor sequence variants. Eur Heart J [Epub ahead of print]
    • (2012) Eur Heart J
    • Huijgen, R.1    Kindt, I.2    Defesche, J.C.3    Kastelein, J.J.4
  • 17
    • 0032802253 scopus 로고    scopus 로고
    • The mammalian low-density lipoprotein receptor family
    • Hussain, M. M., Strickland, D. K., & Bakillah, A. (1999) The mammalian low-density lipoprotein receptor family. Annu Rev Nutr 19, 141-172.
    • (1999) Annu Rev Nutr , vol.19 , pp. 141-172
    • Hussain, M.M.1    Strickland, D.K.2    Bakillah, A.3
  • 18
    • 22244478077 scopus 로고    scopus 로고
    • Structure and physiologic function of the low-density lipoprotein receptor
    • Jeon, H., & Blacklow, S. (2005) Structure and physiologic function of the low-density lipoprotein receptor. Annu Rev Biochem 74, 535-562.
    • (2005) Annu Rev Biochem , vol.74 , pp. 535-562
    • Jeon, H.1    Blacklow, S.2
  • 19
    • 0035013711 scopus 로고    scopus 로고
    • Implications for familial hypercholesterolemia from the structure of the LDL receptor YWTD-EGF domain pair
    • Jeon, H., Meng, W., Takagi, J., Eck, M. J., Springer, T. A., & Blacklow, S. C. (2001) Implications for familial hypercholesterolemia from the structure of the LDL receptor YWTD-EGF domain pair. Nature Struct Biol 8, 499-504.
    • (2001) Nature Struct Biol , vol.8 , pp. 499-504
    • Jeon, H.1    Meng, W.2    Takagi, J.3    Eck, M.J.4    Springer, T.A.5    Blacklow, S.C.6
  • 20
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh, K. & Toh, H. (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9, 286-298.
    • (2008) Brief Bioinform , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 21
    • 78049258389 scopus 로고    scopus 로고
    • Analysis of LDLR mRNA in patients with familial hypercholesterolemia revealed a novel mutation in intron 14, which activates a cryptic splice site
    • Kulseth, M. A., Berge, K. E., Bogsrud, M. P., & Leren, T. P. (2010) Analysis of LDLR mRNA in patients with familial hypercholesterolemia revealed a novel mutation in intron 14, which activates a cryptic splice site. J Hum Genet 55, 676-680.
    • (2010) J Hum Genet , vol.55 , pp. 676-680
    • Kulseth, M.A.1    Berge, K.E.2    Bogsrud, M.P.3    Leren, T.P.4
  • 22
    • 0033852848 scopus 로고    scopus 로고
    • NMR structure of a concatemer of the first and second ligand-binding modules of the human low-density lipoprotein receptor
    • Kurniawan, N. D., Atkins, A. R., Bieri, S., Brown, C. J., Brereton, I. M., Kroon, P. A., & Smith, R. (2000) NMR structure of a concatemer of the first and second ligand-binding modules of the human low-density lipoprotein receptor. Protein Sci 9, 1282-1293.
    • (2000) Protein Sci , vol.9 , pp. 1282-1293
    • Kurniawan, N.D.1    Atkins, A.R.2    Bieri, S.3    Brown, C.J.4    Brereton, I.M.5    Kroon, P.A.6    Smith, R.7
  • 23
    • 75549086991 scopus 로고    scopus 로고
    • Gene3D: Merging structure and function for a thousand genomes
    • Lees, J., Yeats, C., Redfern, O., Clegg, A., & Orengo, C. (2010) Gene3D: Merging structure and function for a thousand genomes. Nucleic Acids Res 38, 296-300.
    • (2010) Nucleic Acids Res , vol.38 , pp. 296-300
    • Lees, J.1    Yeats, C.2    Redfern, O.3    Clegg, A.4    Orengo, C.5
  • 24
    • 44849108492 scopus 로고    scopus 로고
    • Update and analysis of the university college London low density lipoprotein receptor familial hypercholesterolemia database
    • Leigh, S. E. A., Foster, A. H., Whittall, R. A., Hubbart, C. S., & Humphries, S. E. (2008) Update and analysis of the university college London low density lipoprotein receptor familial hypercholesterolemia database. Annals Hum Gene 72, 485-498.
    • (2008) Annals Hum Gene , vol.72 , pp. 485-498
    • Leigh, S.E.A.1    Foster, A.H.2    Whittall, R.A.3    Hubbart, C.S.4    Humphries, S.E.5
  • 25
    • 0037541585 scopus 로고    scopus 로고
    • A review on the diagnosis, natural history, and treatment of familial hypercholesterolaemia
    • Marks, D., Thorogood, M., Neil, H. A., & Humphries, S. E. (2003) A review on the diagnosis, natural history, and treatment of familial hypercholesterolaemia. Atherosclerosis 168, 1-14.
    • (2003) Atherosclerosis , vol.168 , pp. 1-14
    • Marks, D.1    Thorogood, M.2    Neil, H.A.3    Humphries, S.E.4
  • 26
    • 0043122919 scopus 로고    scopus 로고
    • SIFT: Predicting amino acid changes that affect protein function
    • Ng, P. C. & Henikoff, S. (2003) SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res 31, 3812-3814.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3812-3814
    • Ng, P.C.1    Henikoff, S.2
  • 27
    • 0036713510 scopus 로고    scopus 로고
    • Human non-synonymous SNPs: Server and survey
    • Ramensky, V., Bork, P., & Sunyaev, S. (2002) Human non-synonymous SNPs: Server and survey. Nucleic Acid Res 33, 3894-3900.
    • (2002) Nucleic Acid Res , vol.33 , pp. 3894-3900
    • Ramensky, V.1    Bork, P.2    Sunyaev, S.3
  • 29
    • 80052964856 scopus 로고    scopus 로고
    • Understanding the contribution of synonymous mutations to human disease
    • Sauna, Z. E. & Kimchi-Sarfaty, C. (2011) Understanding the contribution of synonymous mutations to human disease. Nat Rev Genet 12, 683-691.
    • (2011) Nat Rev Genet , vol.12 , pp. 683-691
    • Sauna, Z.E.1    Kimchi-Sarfaty, C.2
  • 30
    • 77955151784 scopus 로고    scopus 로고
    • Mutation Taster evaluates disease-causing potential of sequence alterations
    • Schwarz, J. M., Rödelsperger, C., Schuelke, M., & Seelow, D. (2010) Mutation Taster evaluates disease-causing potential of sequence alterations. Nat Methods, 575-576.
    • (2010) Nat Methods , pp. 575-576
    • Schwarz, J.M.1    Rödelsperger, C.2    Schuelke, M.3    Seelow, D.4
  • 31
    • 73049111746 scopus 로고    scopus 로고
    • Mutation screening in patients for familial hypercholesterolaemia (ADH)
    • Taylor, A., Patel, K., Tsedeke, J., Humphries, S. E., & Norbury, G. (2010) Mutation screening in patients for familial hypercholesterolaemia (ADH). Clin Genet 77, 97-99.
    • (2010) Clin Genet , vol.77 , pp. 97-99
    • Taylor, A.1    Patel, K.2    Tsedeke, J.3    Humphries, S.E.4    Norbury, G.5
  • 33
    • 78049484011 scopus 로고    scopus 로고
    • Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces
    • Venselaar, H., Te Beek, T. A., Kuipers, R. K., Hekkelman, M. L., & Vriend, G. (2010) Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces. BMC Bioinformatics 11, 548-558.
    • (2010) BMC Bioinformatics , vol.11 , pp. 548-558
    • Venselaar, H.1    Te Beek, T.A.2    Kuipers, R.K.3    Hekkelman, M.L.4    Vriend, G.5
  • 34
    • 65449188232 scopus 로고    scopus 로고
    • Jalview version 2-A multiple sequence alignment editor and analysis workbench
    • Waterhouse, A. M., Procter, J. B., Martin, D. M. A., Clamp, M., & Barton, G. J. (2009) Jalview version 2-A multiple sequence alignment editor and analysis workbench. Bioinformatics 25, 1189-1191.
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.A.3    Clamp, M.4    Barton, G.J.5
  • 36
    • 38149063754 scopus 로고    scopus 로고
    • Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker
    • Wildeman, M., van Ophuizen, E., den Dunnen, J. T., & Taschner, P. E. (2008) Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker. Hum Mutat 29, 6-13.
    • (2008) Hum Mutat , vol.29 , pp. 6-13
    • Wildeman, M.1    van Ophuizen, E.2    den Dunnen, J.T.3    Taschner, P.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.