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Volumn 3, Issue 3, 2012, Pages 361-377

Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen Xanthomonas campestris pathovar musacearum

Author keywords

Banana xanthomonas wilt; Ensete ventricosum; Molecular markers; SNP; Whole genome sequencing; Xanthomonas vasicola

Indexed keywords

ARTICLE; BACTERIUM ISOLATE; BANANA; CELL LINEAGE; CLADISTICS; GENE LOCUS; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC POLYMORPHISM; GENETIC SIMILARITY; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGEOGRAPHY; PLANT GENETICS; POLYMERASE CHAIN REACTION; PROTEIN ASSEMBLY; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; XANTHOMONAS CAMPESTRIS; XANTHOMONAS CAMPESTRIS MUSACEARUM; XANTHOMONAS VASICOLA;

EID: 84865073011     PISSN: None     EISSN: 20734425     Source Type: Journal    
DOI: 10.3390/genes3030361     Document Type: Article
Times cited : (40)

References (29)
  • 3
    • 33846527806 scopus 로고
    • A note on wilt of banana caused by the enset wilt organism Xanthomonas musacearum
    • Yirgou, D.; Bradbury, J.F. A note on wilt of banana caused by the enset wilt organism Xanthomonas musacearum. East Afr. Agric. Forestry J. 1974, 40, 111-114.
    • (1974) East Afr. Agric. Forestry J. , vol.40 , pp. 111-114
    • Yirgou, D.1    Bradbury, J.F.2
  • 5
    • 33846983846 scopus 로고    scopus 로고
    • Presence of banana Xanthomonas wilt (Xanthomonas campestris pv musacearum) in the Democratic Republic of Congo (DRC)
    • Ndungo, V.; Eden-Green, S.; Blomme, G.; Crozier, J.; Smith, J.J. Presence of banana Xanthomonas wilt (Xanthomonas campestris pv. musacearum) in the Democratic Republic of Congo (DRC). Plant Pathol. 2006, 55, 294.
    • (2006) Plant Pathol. , vol.55 , pp. 294
    • Ndungo, V.1    Eden-Green, S.2    Blomme, G.3    Crozier, J.4    Smith, J.J.5
  • 6
    • 38949150416 scopus 로고    scopus 로고
    • Presence of banana bacterial wilt (Xanthomonas campestris pv. musacearum) in Rwanda
    • Reeder, R.H.; Muhinyuza, J.B.; Opolot, O.; Aritua, V.; Crozier, J.; Smith, J. Presence of banana bacterial wilt (Xanthomonas campestris pv. musacearum) in Rwanda. Plant Pathol. 2007, 56, 1038.
    • (2007) Plant Pathol. , vol.56 , pp. 1038
    • Reeder, R.H.1    Muhinyuza, J.B.2    Opolot, O.3    Aritua, V.4    Crozier, J.5    Smith, J.6
  • 7
    • 77956043821 scopus 로고    scopus 로고
    • Identification of Xanthomonas vasicola (formerly X. campestris pv musacearum), causative organism of banana Xanthomonas wilt, in Tanzania, Kenya and Burundi
    • Carter, B.A.; Reeder, R.; Mgenzi, S.R.; Kinyua, M.; Mbaka, J.N.; Doyle, K.; Nakato, V.; Mwangi, M.; Beed, F.; Aritua, V.; et al. Identification of Xanthomonas vasicola (formerly X. campestris pv. musacearum), causative organism of banana Xanthomonas wilt, in Tanzania, Kenya and Burundi. Plant Pathol. 2010, 59, 403.
    • (2010) Plant Pathol. , vol.59 , pp. 403
    • Carter, B.A.1    Reeder, R.2    Mgenzi, S.R.3    Kinyua, M.4    Mbaka, J.N.5    Doyle, K.6    Nakato, V.7    Mwangi, M.8    Beed, F.9    Aritua, V.10
  • 10
    • 77957325067 scopus 로고    scopus 로고
    • Expression of sweet pepper Hrap gene in banana enhances resistance to Xanthomonas campestris pv musacearum
    • Tripathi, L.; Mwaka, H.; Tripathi, J.N.; Tushemereirwe, W.K. Expression of sweet pepper Hrap gene in banana enhances resistance to Xanthomonas campestris pv. musacearum. Mol. Plant Pathol. 2010, 11, 721-731.
    • (2010) Mol. Plant Pathol. , vol.11 , pp. 721-731
    • Tripathi, L.1    Mwaka, H.2    Tripathi, J.N.3    Tushemereirwe, W.K.4
  • 13
    • 70350123749 scopus 로고    scopus 로고
    • Molecular epidemiology of Xanthomonas campestris pv musacearum, the causal agent of xanthomonas wilt of banana and enset
    • Aritua, V.; Parkinson, N.; Thwaites, R.; Jones, D.R.; Tushemereirwe, W.; Smith, J.J. Molecular epidemiology of Xanthomonas campestris pv. musacearum, the causal agent of xanthomonas wilt of banana and enset. Acta Hort. (ISHS) 2009, 828, 219-226.
    • (2009) Acta Hort. (ISHS) , vol.828 , pp. 219-226
    • Aritua, V.1    Parkinson, N.2    Thwaites, R.3    Jones, D.R.4    Tushemereirwe, W.5    Smith, J.J.6
  • 15
    • 33846955097 scopus 로고    scopus 로고
    • Rep-PCR reveals a high genetic homogeneity among Ugandan isolates of Xanthomonas campestris pv musacearum
    • Aritua, V.; Nanyonjo, A.; Kumakech, F.; Tushemereirwe, W. Rep-PCR reveals a high genetic homogeneity among Ugandan isolates of Xanthomonas campestris pv musacearum. Afr. J. Biotechnol. 2007, 6, 179-183.
    • (2007) Afr. J. Biotechnol. , vol.6 , pp. 179-183
    • Aritua, V.1    Nanyonjo, A.2    Kumakech, F.3    Tushemereirwe, W.4
  • 16
    • 84856652357 scopus 로고    scopus 로고
    • Insights from genomic comparisons of genetically monomorphic bacterial pathogens
    • Achtman, M. Insights from genomic comparisons of genetically monomorphic bacterial pathogens. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 2012, 367, 860-867.
    • (2012) Philos. Trans. R. Soc. Lond. B. Biol. Sci. , vol.367 , pp. 860-867
    • Achtman, M.1
  • 18
    • 84862198590 scopus 로고    scopus 로고
    • The sequence read archive: Explosive growth of sequencing data
    • International nucleotide sequence database collaboration
    • Kodama, Y.; Shumway, M.; Leinonen, R. International nucleotide sequence database collaboration. The sequence read archive: Explosive growth of sequencing data. Nucleic Acids Res. 2012, 40, D54-D56.
    • (2012) Nucleic Acids Res. , vol.40
    • Kodama, Y.1    Shumway, M.2    Leinonen, R.3
  • 19
    • 84055184697 scopus 로고    scopus 로고
    • Draft Genome sequences of Xanthomonas sacchari and two banana-associated Xanthomonads reveal insights into the Xanthomonas Group 1 Clade
    • Studholme, D.J.; Wasukira, A.; Paszkiewicz, K.; Aritua, V.; Thwaites, R.; Smith, J.; Grant, M. Draft Genome sequences of Xanthomonas sacchari and two banana-associated Xanthomonads reveal insights into the Xanthomonas Group 1 Clade. Genes 2011, 2, 1050-1065.
    • (2011) Genes , vol.2 , pp. 1050-1065
    • Studholme, D.J.1    Wasukira, A.2    Paszkiewicz, K.3    Aritua, V.4    Thwaites, R.5    Smith, J.6    Grant, M.7
  • 20
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D.R.; Birney, E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008, 18, 821-829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 22
    • 75649151510 scopus 로고    scopus 로고
    • A PCR assay for the detection of Xanthomonas campestris pv musacearum in bananas
    • Lewis Ivey, M.L.; Tusiime, G.; Miller, S.A. A PCR assay for the detection of Xanthomonas campestris pv. musacearum in bananas. Plant Dis. 2010, 94, 109-114.
    • (2010) Plant Dis. , vol.94 , pp. 109-114
    • Lewis Ivey, M.L.1    Tusiime, G.2    Miller, S.A.3
  • 23
    • 79955548487 scopus 로고    scopus 로고
    • Development of a specific molecular tool for detecting Xanthomonas campestris pv musacearum
    • Adikini, S.; Tripathi, L.; Beeda, F.; Tusiime, G.; Magembe, E.M.; Kim, D.J. Development of a specific molecular tool for detecting Xanthomonas campestris pv. musacearum. Plant Pathol. 2011, 60, 443-452.
    • (2011) Plant Pathol. , vol.60 , pp. 443-452
    • Adikini, S.1    Tripathi, L.2    Beeda, F.3    Tusiime, G.4    Magembe, E.M.5    Kim, D.J.6
  • 24
    • 84860704192 scopus 로고    scopus 로고
    • Multiplex PCR for specific and robust detection of Xanthomonas campestris pv musacearum in pure culture and infected plant material
    • Adriko, J.; Aritua, V.; Mortensen, C.N.; Tushemereirwe, W.K.; Kubiriba, J.; Lund, O.S. Multiplex PCR for specific and robust detection of Xanthomonas campestris pv. musacearum in pure culture and infected plant material. Plant Pathol. 2012, 61, 489-497.
    • (2012) Plant Pathol. , vol.61 , pp. 489-497
    • Adriko, J.1    Aritua, V.2    Mortensen, C.N.3    Tushemereirwe, W.K.4    Kubiriba, J.5    Lund, O.S.6
  • 25
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H.; Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 26
    • 0025782871 scopus 로고
    • Complete nucleotide sequence of filamentous phage Cf1c from Xanthomonas campestris pv citri
    • Kuo, T.T.; Tan, M.S.; Su, M.T.; Yang, M.K. Complete nucleotide sequence of filamentous phage Cf1c from Xanthomonas campestris pv. citri. Nucleic Acids Res. 1991, 19, 2498.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 2498
    • Kuo, T.T.1    Tan, M.S.2    Su, M.T.3    Yang, M.K.4
  • 28
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K.; Nei, M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 1993, 10, 512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 29
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28, 2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.