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Volumn 2, Issue 4, 2011, Pages 1050-1065

Draft genome sequences of xanthomonas sacchari and two banana-associated xanthomonads reveal insights into the xanthomonas group 1 clade

Author keywords

Banana; Genome; Xanthomonas

Indexed keywords

ALLELE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BANANA; CLADISTICS; CONTROLLED STUDY; COTTON; GENE SEQUENCE; GENOMICS; GINGER; GUM GENE; METE GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT MICROORGANISM INTERACTION; RICE; SEQUENCE ANALYSIS; SUGARCANE; TYPE III SECRETION SYSTEM; XANTHOMONAS; XANTHOMONAS ALBILINEANS; XANTHOMONAS CAMPESTRIS; XANTHOMONAS MALVACEARUM; XANTHOMONAS SACCHARIN;

EID: 84055184697     PISSN: None     EISSN: 20734425     Source Type: Journal    
DOI: 10.3390/genes2041050     Document Type: Article
Times cited : (48)

References (33)
  • 1
    • 0030898948 scopus 로고    scopus 로고
    • Comparison of 16S ribosomal DNA sequences of all Xanthomonas species
    • Hauben, L.; Vauterin, L.; Swings, J.; Moore, E.R. Comparison of 16S ribosomal DNA sequences of all Xanthomonas species. Int. J. Syst. Bacteriol. 1997, 47, 328-335.
    • (1997) Int. J. Syst. Bacteriol , vol.47 , pp. 328-335
    • Hauben, L.1    Vauterin, L.2    Swings, J.3    Moore, E.R.4
  • 2
    • 0036201274 scopus 로고    scopus 로고
    • Phylogenetic analysis of Xanthomonas species based upon 16S-23S rDNA intergenic spacer sequences
    • Gonçalves, E.R.; Rosato, Y.B. Phylogenetic analysis of Xanthomonas species based upon 16S-23S rDNA intergenic spacer sequences. Int. J. Syst. Evol. Microbiol. 2002, 52, 355-361.
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 355-361
    • Gonçalves, E.R.1    Rosato, Y.B.2
  • 4
    • 37449010217 scopus 로고    scopus 로고
    • Phylogenetic analysis of Xanthomonas species by comparison of partial gyrase B gene sequences
    • Parkinson, N.; Aritua, V.; Heeney, J.; Cowie, C.; Bew, J.; Stead, D. Phylogenetic analysis of Xanthomonas species by comparison of partial gyrase B gene sequences. Int. J. Syst. Evol. Microbiol. 2007, 57, 2881-2887.
    • (2007) Int. J. Syst. Evol. Microbiol , vol.57 , pp. 2881-2887
    • Parkinson, N.1    Aritua, V.2    Heeney, J.3    Cowie, C.4    Bew, J.5    Stead, D.6
  • 6
    • 63449114590 scopus 로고    scopus 로고
    • Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences
    • Parkinson, N.; Cowie, C.; Heeney, J.; Stead, D. Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences. Int. J. Syst. Evol. Microbiol. 2009, 59, 264-274.
    • (2009) Int. J. Syst. Evol. Microbiol , vol.59 , pp. 264-274
    • Parkinson, N.1    Cowie, C.2    Heeney, J.3    Stead, D.4
  • 8
    • 75449104484 scopus 로고    scopus 로고
    • The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae
    • Pieretti, I.; Royer, M.; Barbe, V.; Carrere, S.; Koebnik, R.; Cociancich, S.; Couloux, A.; Darrasse, A.; Gouzy, J.; Jacques, M.A.; et al. The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. BMC Genomics 2009, 10, 616.
    • (2009) BMC Genomics , vol.10 , pp. 616
    • Pieretti, I.1    Royer, M.2    Barbe, V.3    Carrere, S.4    Koebnik, R.5    Cociancich, S.6    Couloux, A.7    Darrasse, A.8    Gouzy, J.9    Jacques, M.A.10
  • 9
    • 78651314174 scopus 로고    scopus 로고
    • Genomic and evolutionary features of the SPI-1 type III secretion system that is present in Xanthomonas albilineans but is not essential for xylem colonization and symptom development of sugarcane leaf scald
    • Marguerettaz, M.; Pieretti, I.; Gayral, P.; Puig, J.; Brin, C.; Cociancich, S.; Poussier, S.; Rott, P.; Royer, M. Genomic and evolutionary features of the SPI-1 type III secretion system that is present in Xanthomonas albilineans but is not essential for xylem colonization and symptom development of sugarcane leaf scald. Mol. Plant Microbe Interact. 2011, 24, 246-259.
    • (2011) Mol. Plant Microbe Interact , vol.24 , pp. 246-259
    • Marguerettaz, M.1    Pieretti, I.2    Gayral, P.3    Puig, J.4    Brin, C.5    Cociancich, S.6    Poussier, S.7    Rott, P.8    Royer, M.9
  • 10
    • 79953738075 scopus 로고    scopus 로고
    • Identification of new candidate pathogenicity factors in the xylem-invading pathogen Xanthomonas albilineans by transposon mutagenesis
    • Rott, P.; Fleites, L.; Marlow, G.; Royer, M.; Gabriel, D.W. Identification of new candidate pathogenicity factors in the xylem-invading pathogen Xanthomonas albilineans by transposon mutagenesis. Mol. Plant Microbe Interact. 2011, 24, 594-605.
    • (2011) Mol. Plant Microbe Interact , vol.24 , pp. 594-605
    • Rott, P.1    Fleites, L.2    Marlow, G.3    Royer, M.4    Gabriel, D.W.5
  • 12
    • 84055165698 scopus 로고    scopus 로고
    • Dar Es Salaam, Tanzania. Personal communication
    • Byachwezi, M. Belgian Development Agency, Dar Es Salaam, Tanzania. Personal communication, 2011.
    • (2011) Belgian Development Agency
    • Byachwezi, M.1
  • 13
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K.; Nei, M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 1993, 10, 512-526.
    • (1993) Mol. Biol. Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 14
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28, 2731-2739.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 15
    • 57049118038 scopus 로고    scopus 로고
    • Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in Xanthomonas
    • Lu, H.; Patil, P.; van Sluys, M.A.; White, F.F.; Ryan, R.P.; Dow, J.M.; Rabinowicz, P.; Salzberg, S.L.; Leach, J.E.; Sonti, R.; et al. Acquisition and evolution of plant pathogenesis-associated gene clusters and candidate determinants of tissue-specificity in Xanthomonas. PLoS ONE 2008, 3, e3828.
    • (2008) PLoS ONE , vol.3
    • Lu, H.1    Patil, P.2    van Sluys, M.A.3    White, F.F.4    Ryan, R.P.5    Dow, J.M.6    Rabinowicz, P.7    Salzberg, S.L.8    Leach, J.E.9    Sonti, R.10
  • 16
    • 84055165699 scopus 로고    scopus 로고
    • Resolving the phylogenetic and taxonomic relationship of Xanthomonas and Stenotrophomonas strains using complete rpoB gene sequence
    • Sharma, V.; Patil, P.B. Resolving the phylogenetic and taxonomic relationship of Xanthomonas and Stenotrophomonas strains using complete rpoB gene sequence. PLoS Curr. 2011, 3, RRN1239.
    • (2011) PLoS Curr , vol.3
    • Sharma, V.1    Patil, P.B.2
  • 18
    • 40449117443 scopus 로고    scopus 로고
    • The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp
    • michiganensis NCPPB382 reveals a large island involved in pathogenicity
    • Gartemann, K.H.; Abt, B.; Bekel, T.; Burger, A.; Engemann, J.; Flügel, M.; Gaigalat, L.; Goesmann, A.; Gräfen, I.; Kalinowski, J.; et al. The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity. J. Bacteriol. 2008, 190, 2138-2149.
    • (2008) J. Bacteriol , vol.190 , pp. 2138-2149
    • Gartemann, K.H.1    Abt, B.2    Bekel, T.3    Burger, A.4    Engemann, J.5    Flügel, M.6    Gaigalat, L.7    Goesmann, A.8    Gräfen, I.9    Kalinowski, J.10
  • 19
    • 0029908527 scopus 로고    scopus 로고
    • Fastidious xylem-limited bacterial plant pathogens
    • Purcell, A.H.; Hopkins, D.L. Fastidious xylem-limited bacterial plant pathogens. Annu. Rev. Phytopathol. 1996, 34, 131-151.
    • (1996) Annu. Rev. Phytopathol , vol.34 , pp. 131-151
    • Purcell, A.H.1    Hopkins, D.L.2
  • 20
    • 0021824397 scopus 로고
    • Preliminary characterization of an antibiotic produced by Xanthomonas albilineans which inhibits DNA synthesis
    • Birch, R.G.; Patil, S.S. Preliminary characterization of an antibiotic produced by Xanthomonas albilineans which inhibits DNA synthesis in Escherichia coli. J. Gen. Microbiol. 1985, 131, 1069-1075.
    • (1985) Escherichia Coli. J. Gen. Microbiol , vol.131 , pp. 1069-1075
    • Birch, R.G.1    Patil, S.S.2
  • 21
    • 42049086291 scopus 로고    scopus 로고
    • DNA gyrase from the albicidin producer Xanthomonas albilineans has multiple-antibiotic-resistance and unusual enzymatic properties
    • Hashimi, S.M.; Huang, G.; Maxwell, A.; Birch, R.G. DNA gyrase from the albicidin producer Xanthomonas albilineans has multiple-antibiotic-resistance and unusual enzymatic properties. Antimicrob. Agents Chemother. 2008, 52, 1382-1390.
    • (2008) Antimicrob. Agents Chemother , vol.52 , pp. 1382-1390
    • Hashimi, S.M.1    Huang, G.2    Maxwell, A.3    Birch, R.G.4
  • 24
    • 20144384250 scopus 로고    scopus 로고
    • Identification of a new quorum-sensing-controlled virulence factor in Erwinia carotovora subsp
    • atroseptica secreted via the type II targeting pathway
    • Corbett, M.; Virtue, S.; Bell, K.; Birch, P.; Burr, T.; Hyman, L.; Lilley, K.; Poock, S.; Toth, I.; Salmond, G. Identification of a new quorum-sensing-controlled virulence factor in Erwinia carotovora subsp. atroseptica secreted via the type II targeting pathway. Mol. Plant Microbe Interact. 2005, 18, 334-342.
    • (2005) Mol. Plant Microbe Interact , vol.18 , pp. 334-342
    • Corbett, M.1    Virtue, S.2    Bell, K.3    Birch, P.4    Burr, T.5    Hyman, L.6    Lilley, K.7    Poock, S.8    Toth, I.9    Salmond, G.10
  • 25
    • 5644233706 scopus 로고    scopus 로고
    • The secretome of the plant pathogenic bacterium Erwinia chrysanthemi
    • Kazemi-Pour, N.; Condemine, G.; Hugouvieux-Cotte-Pattat, N. The secretome of the plant pathogenic bacterium Erwinia chrysanthemi. Proteomics 2004, 4, 3177-3186.
    • (2004) Proteomics , vol.4 , pp. 3177-3186
    • Kazemi-Pour, N.1    Condemine, G.2    Hugouvieux-Cotte-Pattat, N.3
  • 26
    • 23844536513 scopus 로고    scopus 로고
    • Bacterial type two secretion system secreted proteins: Double-edged swords for plant pathogens
    • Jha, G.; Rajeshwari, R.; Sonti, R.V.; Bacterial type two secretion system secreted proteins: Double-edged swords for plant pathogens. Mol. Plant Microbe Interact. 2005, 18, 891-898.
    • (2005) Mol. Plant Microbe Interact , vol.18 , pp. 891-898
    • Jha, G.1    Rajeshwari, R.2    Sonti, R.V.3
  • 27
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • Katoh, K.; Asimenos, G.; Toh, H. Multiple alignment of DNA sequences with MAFFT. Methods Mol. Biol. 2009, 537, 39-64.
    • (2009) Methods Mol. Biol , vol.537 , pp. 39-64
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 28
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H.; Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 30
  • 31
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • Stothard, P.; Wishart, D.S. Circular genome visualization and exploration using CGView. Bioinformatics 2005, 21, 537-539.
    • (2005) Bioinformatics , vol.21 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2
  • 32
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D.R.; Birney, E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008, 18, 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.