Genome-wide analysis in Brazilian Xavante Indians reveals low degree of admixture

PLoS ONE

Volumn 7, Issue 8, 2012, Pages

  Kuhn, Patricia C ^a   Horimoto, Andréa R V Russo ^b   Sanches, José Maurício ^b   Vieira Filho, João Paulo B ^a   Franco, Luciana ^a   Fabbro, Amaury Dal ^b   Franco, Laercio Joel ^b   Pereira, Alexandre C ^b   Moises, Regina S ^a  

^a FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

AFRICAN; AMERIDIAN; ARTICLE; ASIAN; BRAZIL; BRAZILIAN XAVANTE INDIAN; CROSS-SECTIONAL STUDY; ETHNIC GROUP; EUROPEAN; FEMALE; GENETIC ADMIXTURE; GENETIC ANALYSIS; GENETIC MARKER; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE MAP; HUMAN; HUMAN GENOME; MALE; POPULATION GENETIC STRUCTURE; PRINCIPAL COMPONENT ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

BRAZIL; CROSS-SECTIONAL STUDIES; ETHNIC GROUPS; GENETIC VARIATION; GENETICS, POPULATION; HAPMAP PROJECT; HUMANS; INDIANS, SOUTH AMERICAN; MODELS, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; POPULATION GROUPS;

EID: 84864983923     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0042702     Document Type: Article

References (27)

1. Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, et al. (2002) Genetic structure of human populations. Science 298: 2381-2384.
2. Tishkoff SA, Verrelli BC, (2003) Patterns of human genetic diversity: implications for human evolutionary history and disease. Annu Rev Genomics Hum Genet 4: 293-340.
3. Cavalli-Sforza LL, Feldman MW (2003) The application of molecular genetic approaches to the study of human evolution. Nat Genet 33: Suppl S266-275.
4. Pereira NOM, Santos RV, Welch JR, Souza LG, Coimbra CEA Jr, (2009) Demography, territory, and identity of indigenous peoples in Brazil: The Xavante indians and the 2000 Brazilian National Census. Human Organization 68: 166-180.
5. Coimbra CEA Jr, Flowers NM, Salzano FM, Santos RV (2002) The Xavant in transition: health, ecology and bioanthropology in Central Brazil. Ann Arbor: University of Michigan Press. 344 p.
6. Nell JV, Salzano FM, Junqueira PC, Maybury-Lewis D, (1964) Studies on the Xavante Indians of the Brazilian Mato Grosso. Am. J. Hum. Genet 16: 52-140.
7. Garfield S (2001) Indigenous struggle at the heart of Brazil: state policy, frontier expansion, and the Xavante Indians. Durham: Duke University Press. 361 p.
8. Giolo SR, Soler JM, Greenway SC, Almeida MA, de Andrade M, et al. (2012) Brazilian urban population genetic structure reveals a high degree of admixture. Eur J Hum Genet 20: 111-116.
9. Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, et al. (2008) Worldwide human relationships inferred from genome-wide patterns of variation. Science 319: 1100-1104.
10. Altshuler DM, Gibbs RA, Peltonen L, (2010) Dermitzakis E, Schaffner SF, et al. (2010) Integrating common and rare genetic variation in diverse human populations. Nature 467: 52-58.
11. Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
12. Kalinowski ST, Wagner AP, Taper ML, (2006) ML-Relate: a computer program for maximum likelihood estimation of relatedness and relationship. Molecular Ecology Notes 6: 576-579.
13. Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, et al. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909.
14. Bingham J, Sudarsanam S, (2000) Visualizing large hierarchical clusters in hyperbolic space. Bioinformatics 16: 660-661.
15. Ward RH, Salzano FM, Bonatto SL, Hutz MH, Coimbra CEA, et al. (1996) Mitochondrial DNA polymorphism in three Brazilian Indian tribes. Am J Hum Biol 8: 317-323.
16. Salzano FM, Franco MHLP, Weimer TA, Callegari-Jacques SM, Mestriner MA, et al. (1997) The Brazilian Xavante Indians revisited: new protein genetic studies. Am J Phys Anthropol 104: 23-34.
17. Friedrich DC, Callegari-Jacques SM, Petzl-Erler M, Tsuneto L, Salzano FM, et al. (2012) Stability or variation? Patterns of lactase gene and its enhancer region distributions in Brazilian Amerindians. Am J Phys Anthropol 147: 427-432.
18. Shefferd VC, Stone EM, Carmi R, (1998) Use of isolated inbred human populations for identification of disease genes. Trends Genet 14: 391-396.
19. Kristiansson K, Naukkarinen J, Peltonen L, (2008) Isolated populations and complex disease gene identification. Genome Biology 9: 109.1-109.9.
20. Peltonen L, Palotie A, Lange K, (2000) Use of population isolates for mapping complex traits. Nature Genet 1: 182-190.
21. Jordes LB, Watkins WS, Kere J, Nyman D, Eriksson AW, et al. (2000) Gene mapping in isolated populations: new roles for old friends? Hum Hered 50: 57-65.
22. Wang S, Lewis CM Jr, Jakobsson M, Ramachandran S, Rayet N, et al. (2007) Genetic variation and population structure in native americans. PLoS Genetics 3: 2049-2067.
23. Mulligan CJ, Hunley K, Cole S, Long JC, (2004) Population genetics, history, and health patterns in native americans. Rev Genomics Hum Genet 5: 295-315.
24. Zegura SL, Karafet TM, Zhivotovsky LA, Hammer MF, (2004) High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of native american Y chromosomes into the Americas. Mol Biol Evol 21(1): 164-175.
25. Kolman CJ, Nyamkhishig S, Bermingham E, (1996) Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders. Genetics 142: 1321-1334.
26. Santos FR, Pandya A, Tyler-Smith C, (1999) The Central Siberian origin for native American chromosomes. Am J Hum Genet 64: 619-628.
27. Tamm E, Kivisild T, Reidla M, Metspalu M, Smith DG, et al. (2007) Standstill and spread of native american founders. PLoS One 9: 1-6.