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Volumn 206, Issue 5, 2012, Pages 756-764

Genetic diversity as a marker for timing infection in HIV-infected patients: Evaluation of a 6-month window and comparison with BED

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 84864921292     PISSN: 00221899     EISSN: None     Source Type: Journal    
DOI: 10.1093/infdis/jis411     Document Type: Article
Times cited : (51)

References (47)
  • 1
    • 0003768820 scopus 로고    scopus 로고
    • Public Health Agency of Canada. Surveillance Report to December 31, 2008
    • Public Health Agency of Canada. HIV and AIDS in Canada. Surveillance Report to December 31, 2008. 2009.
    • (2009) HIV and AIDS in Canada
  • 4
    • 68049131915 scopus 로고    scopus 로고
    • Assays for the detection of recent infections with human immunodeficiency virus type 1
    • Murphy G, Parry JV. Assays for the detection of recent infections with human immunodeficiency virus type 1. Euro Surveill 2008; 13.
    • (2008) Euro Surveill , pp. 13
    • Murphy, G.1    Parry, J.V.2
  • 10
    • 37349001981 scopus 로고    scopus 로고
    • Serological testing algorithm shows rising HIV incidence in a UK cohort of men who have sex with men: 10 Years application
    • DOI 10.1097/QAD.0b013e3282ef9fed, PII 0000203020071112000007
    • Fisher M, Pao D, Murphy G, et al. Serological testing algorithm shows rising HIV incidence in a UK cohort of men who have sex with men: 10 years application. AIDS 2007; 21:2309-14. (Pubitemid 350287457)
    • (2007) AIDS , vol.21 , Issue.17 , pp. 2309-2314
    • Fisher, M.1    Pao, D.2    Murphy, G.3    Dean, G.4    McElborough, D.5    Homer, G.6    Parry, J.V.7
  • 11
    • 79952586303 scopus 로고    scopus 로고
    • Determination of mean recency period for estimation of HIV type 1 incidence with the BEDcapture EIA in persons infected with diverse subtypes
    • Parekh BS, Hanson DL, Hargrove J, et al. Determination of mean recency period for estimation of HIV type 1 incidence with the BEDcapture EIA in persons infected with diverse subtypes. AIDS Res Hum Retroviruses 2011; 27:265-73.
    • (2011) AIDS Res Hum Retroviruses , vol.27 , pp. 265-273
    • Parekh, B.S.1    Hanson, D.L.2    Hargrove, J.3
  • 12
    • 79951832982 scopus 로고    scopus 로고
    • Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection
    • Kouyos RD, von WV, Yerly S, et al. Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clin Infect Dis 2011; 52:532-9.
    • (2011) Clin Infect Dis , vol.52 , pp. 532-539
    • Kouyos, R.D.1    Von, W.V.2    Yerly, S.3
  • 14
    • 0027422278 scopus 로고
    • Genotypic and phenotypic characterization of HIV-1 in patients with primary infection
    • Zhu T, Mo H,Wang N, et al. Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 1993; 261:1179-81. (Pubitemid 23300886)
    • (1993) Science , vol.261 , Issue.5125 , pp. 1179-1181
    • Zhu, T.1    Mo, H.2    Wang, N.3    Nam, D.S.4    Cao, Y.5    Koup, R.A.6    Ho, D.D.7
  • 15
    • 0032710838 scopus 로고    scopus 로고
    • Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
    • Shankarappa R, Margolick JB, Gange SJ, et al. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J Virol 1999; 73:10489-502.
    • (1999) J Virol , vol.73 , pp. 10489-10502
    • Shankarappa, R.1    Margolick, J.B.2    Gange, S.J.3
  • 17
    • 0034030640 scopus 로고    scopus 로고
    • Integrating laboratory and epidemiological techniques for population- based surveillance of HIV strains and drug resistance in Canada
    • Jayaraman GC, Archibald CP, Lior L, Sutherland D. Integrating laboratory and epidemiological techniques for population-based surveillance of HIV strains and drug resistance in Canada. Can J Infect Dis 2000; 11:74-80. (Pubitemid 30318136)
    • (2000) Canadian Journal of Infectious Diseases , vol.11 , Issue.2 , pp. 74-80
    • Jayaraman, G.C.1    Archibald, C.P.2    Lior, L.3    Sutherland, D.4
  • 18
    • 68949209789 scopus 로고    scopus 로고
    • HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins
    • Brumme ZL, John M, Carlson JM, et al. HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins. PLoS One 2009; 4:e6687.
    • (2009) PLoS One , vol.4
    • Brumme, Z.L.1    John, M.2    Carlson, J.M.3
  • 19
    • 77956638123 scopus 로고    scopus 로고
    • Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics
    • Ragonnet-Cronin M, Ofner-Agostini M, Merks H, et al. Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics. J Acquir Immune Defic Syndr 2010; 55:102-8.
    • (2010) J Acquir Immune Defic Syndr , vol.55 , pp. 102-108
    • Ragonnet-Cronin, M.1    Ofner-Agostini, M.2    Merks, H.3
  • 20
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999; 41:95-8.
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 22
    • 84872663883 scopus 로고    scopus 로고
    • SeqScape [computer program] , Carlsbad, California. Version 2.7. 2009
    • SeqScape [computer program]. Life Technologies Corporation, Carlsbad, California. Version 2.7. 2009.
    • Life Technologies Corporation
  • 23
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Software package for data analysis in molecular biology and evolution
    • Xia X, Xie Z. DAMBE: software package for data analysis in molecular biology and evolution. J Hered 2001; 92:371-3. (Pubitemid 32848767)
    • (2001) Journal of Heredity , vol.92 , Issue.4 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 24
    • 68949209789 scopus 로고    scopus 로고
    • HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins
    • Brumme ZL, John M, Carlson JM, et al. HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins. PLoS One 2009; 4(8).
    • (2009) PLoS One , vol.4 , Issue.8
    • Brumme, Z.L.1    John, M.2    Carlson, J.M.3
  • 25
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: Hypothesis testing using phylogenies
    • DOI 10.1093/bioinformatics/bti079
    • Pond SL, Frost SD, Muse SV. HyPhy: hypothesis testing using phylogenies. Bioinformatics 2005; 21:676-9. (Pubitemid 40424796)
    • (2005) Bioinformatics , vol.21 , Issue.5 , pp. 676-679
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2    Muse, S.V.3
  • 26
    • 84872664482 scopus 로고    scopus 로고
    • SPSS for Windows [computer program]. Version 18.0.0. Chicago: SPSS, 2009
    • SPSS for Windows [computer program]. Version 18.0.0. Chicago: SPSS, 2009.
  • 33
    • 58849137976 scopus 로고    scopus 로고
    • Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: Toward more rigorous epidemiological definitions
    • Brown AE, Gifford RJ, Clewley JP, et al. Phylogenetic reconstruction of transmission events from individuals with acute HIV infection: toward more rigorous epidemiological definitions. J Infect Dis 2009; 199:427-31.
    • (2009) J Infect Dis , vol.199 , pp. 427-431
    • Brown, A.E.1    Gifford, R.J.2    Clewley, J.P.3
  • 34
    • 79960419997 scopus 로고    scopus 로고
    • Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes
    • Herbeck JT, Rolland M, Liu Y, et al. Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes. J Virol 2011.
    • (2011) J Virol
    • Herbeck, J.T.1    Rolland, M.2    Liu, Y.3
  • 35
    • 67249140561 scopus 로고    scopus 로고
    • HIV evolution in early infection: Selection pressures, patterns of insertion and deletion, and the impact of APOBEC
    • Wood N, Bhattacharya T, Keele BF, et al. HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC. PLoS Pathog 2009; 5:e1000414.
    • (2009) PLoS Pathog , vol.5
    • Wood, N.1    Bhattacharya, T.2    Keele, B.F.3
  • 36
    • 80052775958 scopus 로고    scopus 로고
    • Estimates of HIV incidence among drug users in St. Petersburg, Russia: Continued growth of a rapidly expanding epidemic
    • Niccolai LM, Verevochkin SV, Toussova OV, et al. Estimates of HIV incidence among drug users in St. Petersburg, Russia: continued growth of a rapidly expanding epidemic. Eur J Public Health 2010.
    • (2010) Eur J Public Health
    • Niccolai, L.M.1    Verevochkin, S.V.2    Toussova, O.V.3
  • 37
    • 2942665473 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 (HIV-1) diversity at time of infection is not restricted to certain risk groups or specific HIV-1 subtypes
    • DOI 10.1128/JVI.78.13.7279-7283.2004
    • Sagar M, Kirkegaard E, Long EM, et al. Human immunodeficiency virus type 1 (HIV-1) diversity at time of infection is not restricted to certain risk groups or specific HIV-1 subtypes. J Virol 2004; 78:7279-83. (Pubitemid 38781567)
    • (2004) Journal of Virology , vol.78 , Issue.13 , pp. 7279-7283
    • Sagar, M.1    Kirkegaard, E.2    Long, E.M.3    Celum, C.4    Buchbinder, S.5    Daar, E.S.6    Overbaugh, J.7
  • 38
    • 59249096215 scopus 로고    scopus 로고
    • Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1
    • Haaland RE, Hawkins PA, Salazar-Gonzalez J, et al. Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1. PLoS Pathog 2009; 5:e1000274.
    • (2009) PLoS Pathog , vol.5
    • Haaland, R.E.1    Hawkins, P.A.2    Salazar-Gonzalez, J.3
  • 40
    • 69449101717 scopus 로고    scopus 로고
    • Performance of an immunoassay at detecting recent infection among reported HIV diagnoses
    • Le Vu S, Meyer L, Cazein F, et al. Performance of an immunoassay at detecting recent infection among reported HIV diagnoses. AIDS 2009; 23:1773-9.
    • (2009) AIDS , vol.23 , pp. 1773-1779
    • Le Vu, S.1    Meyer, L.2    Cazein, F.3
  • 41
    • 68049142161 scopus 로고    scopus 로고
    • Recent HIV-1 infection detection: Comparison of incidence estimates derived by laboratory assays and repeat testing data
    • Truong HM, Kellogg T, Louie B, Klausner J, Dilley J, McFarland W. Recent HIV-1 infection detection: comparison of incidence estimates derived by laboratory assays and repeat testing data. J Acquir Immune Defic Syndr 2009; 51:502-5.
    • (2009) J Acquir Immune Defic Syndr , vol.51 , pp. 502-505
    • Truong, H.M.1    Kellogg, T.2    Louie, B.3    Klausner, J.4    Dilley, J.5    McFarland, W.6
  • 44
    • 84921707947 scopus 로고    scopus 로고
    • UNAIDS Reference Group on estimates, modelling and projections-statement on the use of the BED assay for the estimation of HIV-1 incidence for surveillance or epidemic monitoring
    • UNAIDS
    • UNAIDS. UNAIDS Reference Group on estimates, modelling and projections-statement on the use of the BED assay for the estimation of HIV-1 incidence for surveillance or epidemic monitoring. Wkly Epidemiol Rec 2006; 81:40.
    • (2006) Wkly Epidemiol Rec , vol.81 , pp. 40


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