A physical map of a BAC clone contig covering the entire autosome insertion between ovine MHC Class IIa and IIb

BMC Genomics

Volumn 13, Issue 1, 2012, Pages

  Li, Gang ^a,b   Liu, Ka ^b,d   Jiao, Shasha ^a,b   Liu, Haibo ^b   Blair, Hugh T ^c   Zhang, Peng ^b,d   Cui, Xiaoran ^b   Tan, Pingping ^b   Gao, Jianfeng ^a,c   Ma, Runlin Z ^b,c,d  

^a SHIHEZI UNIVERSITY   (China)

^b INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^c MASSEY UNIVERSITY   (New Zealand)

^d UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

BAC; Comparative mapping; MHC; OLA; Ovine; Physical map

Indexed keywords

DNA; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2A; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2B; UNCLASSIFIED DRUG;

ARTICLE; AUTOSOME; CHROMOSOME INVERSION; CONSENSUS; CONTIG MAPPING; COW; DNA FINGERPRINTING; DNA SEQUENCE; GENE INSERTION; GENE SEQUENCE; HOMOLOGOUS RECOMBINATION; MOLECULAR CLONING; NONHUMAN; POLYMERASE CHAIN REACTION;

ANIMALS; CATTLE; CHROMOSOMES, ARTIFICIAL, BACTERIAL; GENES, MHC CLASS II; PHYSICAL CHROMOSOME MAPPING; SHEEP;

BOVINAE; OVIS;

EID: 84864917947     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-398     Document Type: Article

References (38)

1. Nei M, Rooney AP. Concerted and birth-and-death evolution of multigene families. Annu Rev Genet 2005, 39:121-152. 10.1146/annurev.genet.39.073003.112240, 1464479, 16285855.
2. Spurgin LG, Richardson DS. How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings. Proc Biol Sci 2010, 277(1684):979-988. 10.1098/rspb.2009.2084, 2842774, 20071384.
3. Trowsdale J. The MHC, disease and selection. Immunol Lett 2011, 137(1-2):1-8.
4. Bonneaud C, Richard M, Faivre B, Westerdahl H, Sorci G. An Mhc class I allele associated to the expression of T-dependent immune response in the house sparrow. Immunogenetics 2005, 57(10):782-789. 10.1007/s00251-005-0046-5, 16189664.
5. Dukkipati VS, Blair HT, Garrick DJ, Murray A. Ovar-Mhc-ovine major histocompatibility complex: role in genetic resistance to diseases. N Z Vet J 2006, 54(4):153-160. 10.1080/00480169.2006.36689, 16915336.
6. Galindo RC, Ayoubi P, Garcia-Perez AL, Naranjo V, Kocan KM, Gortazar C, de la Fuente J. Differential expression of inflammatory and immune response genes in sheep infected with Anaplasma phagocytophilum. Vet Immunol Immunopathol 2008, 126(1-2):27-34.
7. Konnai S, Takeshima SN, Tajima S, Yin SA, Okada K, Onuma M, Aida Y. The influence of ovine MHC class II DRB1 alleles on immune response in bovine leukemia virus infection. Microbiol Immunol 2003, 47(3):223-232.
8. Mena A, Nichani AK, Popowych Y, Ioannou XP, Godson DL, Mutwiri GK, Hecker R, Babiuk LA, Griebel P. Bovine and ovine blood mononuclear leukocytes differ markedly in innate immune responses induced by Class A and Class B CpG-oligodeoxynucleotide. Oligonucleotides 2003, 13(4):245-259. 10.1089/154545703322460621, 15000839.
9. Buitkamp J, Filmether P, Stear MJ, Epplen JT. Class I and class II major histocompatibility complex alleles are associated with faecal egg counts following natural, predominantly Ostertagia circumcincta infection. Parasitol Res 1996, 82(8):693-696. 10.1007/s004360050187, 8897503.
10. Dukkipati VS, Blair HT, Garrick DJ, Murray A. 'Ovar-Mhc' - ovine major histocompatibility complex: structure and gene polymorphisms. Genet Mol Res 2006, 5(4):581-608.
11. Gruszczynska J, Brokowska K, Charon KM, Swiderek WP. Restriction fragment length polymorphism of exon 2 Ovar-DRB1 gene in Polish Heath Sheep and Polish Lowland Sheep. J Appl Genet 2005, 46(3):311-314.
12. Liu H, Liu K, Wang J, Ma RZ. A BAC clone-based physical map of ovine major histocompatibility complex. Genomics 2006, 88(1):88-95. 10.1016/j.ygeno.2006.02.006, 16595171.
13. Liu K, Zhang P, Gao J, Liu H, Li G, Qiu Z, Zhang Y, Ren J, Tan P, Ma RZ. Closing a gap in the physical map of the ovine major histocompatibility complex. Anim Genet 2011, 42(2):204-207.
14. Gao J, Liu K, Liu H, Blair HT, Li G, Chen C, Tan P, Ma RZ. A complete DNA sequence map of the ovine major histocompatibility complex. BMC Genomics 2010, 11:466. 10.1186/1471-2164-11-466, 3091662, 20698968.
15. Miltiadou D, Ballingall KT, Ellis SA, Russell GC, McKeever DJ. Haplotype characterization of transcribed ovine major histocompatibility complex (MHC) class I genes. Immunogenetics 2005, 57(7):499-509. 10.1007/s00251-005-0008-y, 16028041.
16. Mahdy EA, Makinen A, Chowdhary BP, Andersson L, Gustavsson I. Chromosomal localization of the ovine major histocompatibility complex (OLA) by in situ hybridization. Hereditas 1989, 111(1):87-90.
17. Escayg AP, Hickford JG, Bullock DW. Association between alleles of the ovine major histocompatibility complex and resistance to footrot. Res Vet Sci 1997, 63(3):283-287. 10.1016/S0034-5288(97)90035-7, 9491458.
18. Ballingall KT, Fardoe K, McKeever DJ. Genomic organisation and allelic diversity within coding and non-coding regions of the Ovar-DRB1 locus. Immunogenetics 2008, 60(2):95-103. 10.1007/s00251-008-0278-2, 18253728.
19. Deverson EV, Wright H, Watson S, Ballingall K, Huskisson N, Diamond AG, Howard JC. Class II major histocompatibility complex genes of the sheep. Anim Genet 1991, 22(3):211-225.
20. Escayg AP, Hickford JG, Montgomery GW, Dodds KG, Bullock DW. Polymorphism at the ovine major histocompatibility complex class II loci. Anim Genet 1996, 27(5):305-312.
21. Scott PC, Choi CL, Brandon MR. Genetic organization of the ovine MHC class II region. Immunogenetics 1987, 25(2):116-122. 10.1007/BF00364277, 3028945.
22. Snibson KJ, Maddox JF, Fabb SA, Brandon MR. Allelic variation of ovine MHC class II DQA1 and DQA2 genes. Anim Genet 1998, 29(5):356-362. 10.1046/j.1365-2052.1998.295351.x, 9800324.
23. van der Poel JJ, Groenen MA, Dijkhof RJ, Ruyter D, Giphart MJ. The nucleotide sequence of the bovine MHC class II alpha genes: DRA, DOA, and DYA. Immunogenetics 1990, 31(1):29-36. 10.1007/BF00702486, 2298463.
24. Childers CP, Newkirk HL, Honeycutt DA, Ramlachan N, Muzney DM, Sodergren E, Gibbs RA, Weinstock GM, Womack JE, Skow LC. Comparative analysis of the bovine MHC class IIb sequence identifies inversion breakpoints and three unexpected genes. Anim Genet 2006, 37(2):121-129. 10.1111/j.1365-2052.2005.01395.x, 16573526.
25. Devilee P, Warnaar JN, Giphart MJ. MHC homology between various mammalian species at the DNA level: its relevance to MHC evolution. Exp Clin Immunogenet 1984, 1(2):90-98.
26. Qin J, Mamotte C, Cockett NE, Wetherall JD, Groth DM. A map of the class III region of the sheep major histocompatibilty complex. BMC Genomics 2008, 9:409. 10.1186/1471-2164-9-409, 2566321, 18786271.
27. Wright H, Ballingall KT, Redmond J. The DY sub-region of the sheep MHC contains an A/B gene pair. Immunogenetics 1994, 40(3):230-234. 10.1007/BF00167084, 8039830.
28. Hickford JG, Ridgway HJ, Escayg AP. Evolution of the ovine MHC DQA region. Anim Genet 2000, 31(3):200-205. 10.1046/j.1365-2052.2000.00635.x, 10895311.
29. Amills M, Ramiya V, Norimine J, Lewin HA. The major histocompatibility complex of ruminants. Rev Sci Tech 1998, 17(1):108-120.
30. Everts-van Der Wind A, Kata SR, Band MR, Rebeiz M, Larkin DM, Everts RE, Green CA, Liu L, Natarajan S, Goldammer T, et al. A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates. Genome Res 2004, 14(7)):1424-1437. 442159, 15231756.
31. Maddox JF, Davies KP, Crawford AM, Hulme DJ, Vaiman D, Cribiu EP, Freking BA, Beh KJ, Cockett NE, Kang N, et al. An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Res 2001, 11(7):1275-1289. 10.1101/gr.GR-1350R, 311104, 11435411.
32. McShane RD, Gallagher DS, Newkirk H, Taylor JF, Burzlaff JD, Davis SK, Skow LC. Physical localization and order of genes in the class I region of the bovine MHC. Anim Genet 2001, 32(5):235-239. 10.1046/j.1365-2052.2001.00758.x, 11683708.
33. Archibald AL, Cockett NE, Dalrymple BP, Faraut T, Kijas JW, Maddox JF, McEwan JC, Hutton Oddy V, Raadsma HW, Wade C, et al. The sheep genome reference sequence: a work in progress. Anim Genet 2010, 41(5):449-453.
34. Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigo R, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 2009, 324(5926):522-528. 2943200, 19390049.
35. Osoegawa K, Woon PY, Zhao B, Frengen E, Tateno M, Catanese JJ, de Jong PJ. An improved approach for construction of bacterial artificial chromosome libraries. Genomics 1998, 52(1):1-8. 10.1006/geno.1998.5423, 9740665.
36. Marra MA, Kucaba TA, Dietrich NL, Green ED, Brownstein B, Wilson RK, McDonald KM, Hillier LW, McPherson JD, Waterston RH. High throughput fingerprint analysis of large-insert clones. Genome Res 1997, 7(11):1072-1084. 310686, 9371743.
37. Soderlund C, Longden I, Mott R. FPC: a system for building contigs from restriction fingerprinted clones. Comput Appl Biosci 1997, 13(5):523-535.
38. Lewin HA, Russell GC, Glass EJ. Comparative organization and function of the major histocompatibility complex of domesticated cattle. Immunol Rev 1999, 167:145-158. 10.1111/j.1600-065X.1999.tb01388.x, 10319257.