Reverse transcription loop-mediated isothermal amplification assay for rapid detection of Bovine Rotavirus

BMC Veterinary Research

Volumn 8, Issue , 2012, Pages

  Xie, Zhixun ^a,b   Fan, Qing ^a,b   Liu, Jiabo ^a,b   Pang, Yaoshan ^a,b   Deng, Xianwen ^a,b   Xie, Zhiqin ^a,b   Liji, Xie ^a,b   Khan, Mazhar I ^c  

^a Veterinary Research Institute   (China)

^b Guangxi Key Laboratory of Animal Vaccines and Diagnostics   (China)

^c UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

BRV; Reverse transcription loop mediated isothermal amplification (RT LAMP); VP6 gene

Indexed keywords

BOVINAE; BOVINE CORONAVIRUS; BOVINE ROTAVIRUS; BOVINE VIRAL DIARRHEA VIRUS 1; BREDA VIRUS; ROTAVIRUS;

VIRUS RNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; CATTLE; CATTLE DISEASE; CHEMISTRY; COMPARATIVE STUDY; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; NUCLEIC ACID AMPLIFICATION; ROTAVIRUS; ROTAVIRUS INFECTION; SENSITIVITY AND SPECIFICITY; VIROLOGY;

ANIMALS; CATTLE; CATTLE DISEASES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SENSITIVITY AND SPECIFICITY;

MLCS; MLOWN;

EID: 84864916928     PISSN: None     EISSN: 17466148     Source Type: Journal    
DOI: 10.1186/1746-6148-8-133     Document Type: Article

References (23)

1. Prasad BV, Chiu W. Structure of rotavirus. Curr Top Microbiol Immunol 1994, 185:9-29. 10.1007/978-3-642-78256-5_2, 8050286.
2. Pesavento JB, Crawford SE, Estes MK, Prasad BV. Rotavirus proteins: structure and assembly. Curr Top Microbiol Immunol 2006, 309:189-219. 10.1007/3-540-30773-7_7, 16913048.
3. Woode GN, Bridger JC, Jones JM, Flewett TH, Davies HA, Davis HA, White GB. Morphological and antigenic relationships between viruses (rotaviruses) from acutegastroenteritis in children, calves, piglets, mice, and foals. Infect Immun 1976, 14:804-810. 420956, 965097.
4. Kalica AR, Sereno MM, Wyatt RG, Mebus CA, Chanock RM, Kapikian AZ. Comparison of human and animal rotavirus strains by gel electrophoresis of viral RNA. Virol 1978, 87:247-255.
5. de Beer M, Peenze I, da Costa Mendes VM, Steele AD. Comparison of electron microscopy, enzyme-linked immunosorbent assay and latex agglutination for the detection of bovine rotavirus in faeces. J S Afr Vet Assoc 1997, 68:93-96.
6. Ojeh CK. Isolation and propagation of bovine rotavirus in cell culture. Rev Elev Med Vet Pays Trop 1984, 37:400-405.
7. Al-Yousif Y, Anderson J, Chard-Bergstrom C, Kapil S. Development, evaluation, and application of lateral-flow immunoassay (immunochromatography) for detection of rotavirus in bovine fecal samples. Clin Diagn Lab Immunol 2002, 9:723-725. 120004, 11986286.
8. Gutierrez-Aguirre I, Steyer A, Boben J, Gruden K, Poljsak-Prijatelj M, Ravnikar M. Sensitive detection of multiple rotavirus genotypes with a single reverse transcription-real-time quantitative PCR assay. J Clin Microbiol 2008, 46:2547-2554. 10.1128/JCM.02428-07, 2519481, 18524966.
9. Zhu W, Dong J, Haga T, Goto Y, Sueyoshi M. Rapid and sensitive detection of bovine coronavirus and group a bovine rotavirus from fecal samples by using one-step duplex RT-PCR assay. J Vet Med Sci 2011, 73:531-534. 10.1292/jvms.10-0401, 21139352.
10. Fan Q, Xie ZX, Lie JB, Peng YS, Deng XW, Xie ZQ, Xie LJ, Peng Y. Detection of bovine rotavirus by TaqMan based Real-time reverse transcription polymerase chain reaction assay. China Animal Husbandry & Veterinary Medicine 2011, 38:105-108.
11. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T. Loopmediated isothermal amplification of DNA. Nucleic Acids Res 2000, 28:E63. 10.1093/nar/28.12.e63, 102748, 10871386.
12. Xie ZX, Tang Y, Fan Q, Liu JB, Pang YS, Deng XW, Xie ZQ, Peng Y, Xie LJ, Khan MI. Rapid detection of Group I avian adenoviruses by a Loop-mediated isothermal amplification. Avian Dis 2011, 55:575-579. 10.1637/9719-031611-Reg.1, 22312976.
13. Saito R, Misawa Y, Moriya K, Koike K, Ubukata K, Okamura N. Development and evaluation of a loop-mediated isothermal amplification assay for rapid detection of Mycoplasma pneumoniae. J Med Microbiol 2005, 54:1037-1041. 10.1099/jmm.0.46071-0, 16192434.
14. Enomoto Y, Yoshikawa T, Ihira M, Akimoto S, Miyake F, Usui C, Suga S, Suzuki K, Kawana T, Nishiyama Y, et al. Rapid diagnosis of herpes simplex virus infection by a loopmediated isothermal amplification method. J Clin Microbiol 2005, 43:951-955. 10.1128/JCM.43.2.951-955.2005, 548035, 15695716.
15. Peng Y, Xie ZX, Lie JB, Peng YS, Deng XW, Xie ZQ, Xie LJ, Fan Q, Feng JX, Khan MI. Visual detection of H3 subtype avian influenza viruses by reverse transcription loop-mediated isothermal amplification assay. Virol Jour 2011, 8:337.
16. Nemoto M, Imagawa H, Tsujimura K, Yamanaka T, Kondo, Matsumura T. Detection of equine rotavirus by reverse transcription loop-mediated isothermal amplification (RT-LAMP). J Vet Med Sci 2010, 72:823-826. 10.1292/jvms.09-0446, 20160420.
17. Desselberger U, Gray J. Rotaviruses: methods and protocols 2000, 2. Humana Press, Totowa, NJ, Gray J.
18. Nagamine K, Hase T, Notomi T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol Cell Probes 2002, 16:223-229. 10.1006/mcpr.2002.0415, 12144774.
19. Rovira A, Abrahante J, Murtaugh M, Munoz-Zanzi C. Reverse transcription loop-mediated isothermal amplification for the detection of Porcine reproductive and respiratory syndrome virus. J Vet Diagn Invest 2009, 21:350-354. 10.1177/104063870902100308, 19407088.
20. Chen NH, Chen XZ, Hu DM, Yu XL, Wang LL, Han W, Wu JJ, Cao Z, Wang CB, Zhang Q, et al. Rapid differential detection of classical and highly pathogenic North American Porcine Reproductive and Respiratory Syndrome virus in China by a duplex real-time RT-PCR. J Virol Methods 2009, 161:192-198. 10.1016/j.jviromet.2009.06.007, 19539654.
21. Tsunemitsu H, Kamiyama M, Kawashima K, Katsuda K, Kohmoto M, Saif LJ, Shouji T, Onodera T. Molecular characterization of the major capsid protein VP6 of bovine group B rotavirus and its use in seroepidemiology. J Gen Virol 2005, 86:2569-2575. 10.1099/vir.0.80938-0, 16099916.
22. Medici MC, Abelli LA, Martinelli M, Dettori G, Chezzi C. Molecular characterization of VP4, VP6 and VP7 genes of a rare G8P[14] rotavirus strain detected in an infant with gastroenteritis in Italy. Virus Res 2008, 137:163-167. 10.1016/j.virusres.2008.07.005, 18674577.
23. Tosser G, Delaunay T, Kohli E, Grosclaude J, Pothier P, Cohen J. Topology of bovine rotavirus (RF strain) VP6 epitopes by real-time biospecific interaction analysis. Virology 1994, 204:8-16. 10.1006/viro.1994.1505, 7522377.