메뉴 건너뛰기




Volumn 908, Issue , 2012, Pages 141-151

Bioprospecting metagenomics for new glycoside hydrolases

Author keywords

16S rRNA; Biomass decay community; Cellulase; Glycoside hydrolase; Metagenomics

Indexed keywords

BACTERIAL PROTEIN; GLYCOSIDASE; RNA 16S;

EID: 84864863043     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-956-3_14     Document Type: Article
Times cited : (8)

References (38)
  • 2
    • 84872211856 scopus 로고    scopus 로고
    • American Chemical Society Symposium Series, American Chemical Society, Washington, DC
    • Himmel ME (ed) et al (1997) Fuels and chemicals from biomass. American Chemical Society Symposium Series, American Chemical Society, Washington, DC
    • (1997) Fuels and Chemicals from Biomass
    • Himmel, M.E.1
  • 3
    • 0032461832 scopus 로고    scopus 로고
    • Cellulosomesstructure and ultrastructure
    • Bayer EA, Shimon LJ et al (1998) Cellulosomesstructure and ultrastructure. J Struct Biol 124:221-234
    • (1998) J Struct Biol , vol.124 , pp. 221-234
    • Bayer, E.A.1    Shimon, L.J.2
  • 4
    • 4143139469 scopus 로고    scopus 로고
    • The cellulosomes: Multienzyme machines for degradation of plant cell wall polysaccharides
    • DOI 10.1146/annurev.micro.57.030502.091022
    • Bayer EA, Belaich J-P et al (2004) The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides. Annu Rev Microbiol 58:521-554 (Pubitemid 39551996)
    • (2004) Annual Review of Microbiology , vol.58 , pp. 521-554
    • Bayer, E.A.1    Belaich, J.-P.2    Shoham, Y.3    Lamed, R.4
  • 5
    • 28644438257 scopus 로고    scopus 로고
    • Novel hydrolase diversity retrieved from a metagenome library of bovine rumen micro fl ora
    • Ferrer M, Golyshina OV et al (2005) Novel hydrolase diversity retrieved from a metagenome library of bovine rumen micro fl ora. Environ Microbiol 7:1966-2010
    • (2005) Environ Microbiol , vol.7 , pp. 1966-2010
    • Ferrer, M.1    Golyshina, O.V.2
  • 7
    • 38349049462 scopus 로고    scopus 로고
    • Polysaccharide utilization by gut bacteria: Potential for new insights from genomic analysis
    • Flint HJ, Bayer EA et al (2008) Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat Rev Microbiol 6:121-131
    • (2008) Nat Rev Microbiol , vol.6 , pp. 121-131
    • Flint, H.J.1    Bayer, E.A.2
  • 8
    • 44649106335 scopus 로고    scopus 로고
    • Metagenomics in animal gastrointestinal ecosystem: Potential biotechnological prospects
    • Singh B, Gautam SK et al (2008) Metagenomics in animal gastrointestinal ecosystem: potential biotechnological prospects. Anaerobe 14: 138-144
    • (2008) Anaerobe , vol.14 , pp. 138-144
    • Singh, B.1    Gautam, S.K.2
  • 10
    • 46049093760 scopus 로고    scopus 로고
    • Symbioses of fl agellates and prokaryotes in the gut of lower termites
    • Ohkuma M (2008) Symbioses of fl agellates and prokaryotes in the gut of lower termites. Trends Microbiol 16:345-352.
    • (2008) Trends Microbiol , vol.16 , pp. 345-352
    • Ohkuma, M.1
  • 11
    • 57149133968 scopus 로고    scopus 로고
    • Termite digestomes as sources for novel lignocellulases
    • Scharf ME, Tartar A (2008) Termite digestomes as sources for novel lignocellulases. Biofuels, Bioprod Bioref 2:540-552.
    • (2008) Biofuels, Bioprod Bioref , vol.2 , pp. 540-552
    • Scharf, M.E.1    Tartar, A.2
  • 12
    • 0007623742 scopus 로고
    • Gut-associated micro fl ora of Limnoria tripunctata in marine creosote-treated wood pilings
    • Zachary A, Colwell RR (1979) Gut-associated micro fl ora of Limnoria tripunctata in marine creosote-treated wood pilings. Nature 282: 716-717.
    • (1979) Nature , vol.282 , pp. 716-717
    • Zachary, A.1    Colwell, R.R.2
  • 13
    • 35448975682 scopus 로고    scopus 로고
    • Microbial community succession and lignocellulose degradation during agricultural waste composting
    • DOI 10.1007/s10532-007-9108-8
    • Yu H, Zeng G et al (2007) Microbial community succession and lignocellulose degradation during agricultural waste composting. Biodegradation 18:793-802. (Pubitemid 47624342)
    • (2007) Biodegradation , vol.18 , Issue.6 , pp. 793-802
    • Yu, H.1    Zeng, G.2    Huang, H.3    Xi, X.4    Wang, R.5    Huang, D.6    Huang, G.7    Li, J.8
  • 14
    • 49949108153 scopus 로고    scopus 로고
    • The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
    • Schluter A, Bekel T et al (2008) The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. J Biotechnol 136:77-90.
    • (2008) J Biotechnol , vol.136 , pp. 77-90
    • Schluter, A.1    Bekel, T.2
  • 15
    • 77749274574 scopus 로고    scopus 로고
    • Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community
    • Allgaier M, Reddy A et al (2010) Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS ONE 5:e8812.
    • (2010) PLoS ONE , vol.5
    • Allgaier, M.1    Reddy, A.2
  • 17
    • 0025294528 scopus 로고
    • Combination of 16S rRNA targeted oligonucleotide probes with fl ow-cemetry for analysing mixed microbial populations
    • Amann RJ, Binder BL et al (1990) Combination of 16S rRNA targeted oligonucleotide probes with fl ow-cemetry for analysing mixed microbial populations. Appl Environ Microbiol 56:1910-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1910-1925
    • Amann, R.J.1    Binder, B.L.2
  • 19
    • 19144366982 scopus 로고    scopus 로고
    • The metagenomics of soil
    • DOI 10.1038/nrmicro1160
    • Daniel R (2005) The metagenomics of soil. Nat Rev Microbiol 3:470-478. (Pubitemid 40716173)
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.6 , pp. 470-478
    • Daniel, R.1
  • 20
    • 19144366814 scopus 로고    scopus 로고
    • Metagenomics and industrial applications
    • DOI 10.1038/nrmicro1161
    • Lorenz P, Eck J (2005) Metagenomics and industrial applications. Nature 3:510-516. (Pubitemid 40716178)
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.6 , pp. 510-516
    • Lorenz, P.1    Eck, J.2
  • 21
    • 67449124798 scopus 로고    scopus 로고
    • Bioprospecting metagenomes: Glycosyl hydrolases for converting biomass
    • Li LL, McCorkle S et al (2009) Bioprospecting metagenomes: glycosyl hydrolases for converting biomass. Biotechnol Biofuels 2:10.
    • (2009) Biotechnol Biofuels , vol.2 , pp. 10
    • Li, L.L.1    McCorkle, S.2
  • 23
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello EK, Lauber CL et al (2009) Bacterial community variation in human body habitats across space and time. Science 326:1694-1697.
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1    Lauber, C.L.2
  • 24
    • 67349191015 scopus 로고    scopus 로고
    • Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas
    • Foster JS, Green SJ et al (2009) Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas. ISME J 3:573-587.
    • (2009) ISME J , vol.3 , pp. 573-587
    • Foster, J.S.1    Green, S.J.2
  • 25
    • 84872204526 scopus 로고    scopus 로고
    • Everything is everywhere: A 19th century hypothesis con fi rmed with 21st century science
    • in Press
    • Caporaso JG, Field D et al. Everything is everywhere: a 19th century hypothesis con fi rmed with 21st century science. ISME J (in Press)
    • ISME J.
    • Caporaso, J.G.1    Field, D.2
  • 26
    • 71249091315 scopus 로고    scopus 로고
    • The seasonal structure of microbial communities in the Western English Channel
    • Gilbert JA, Field D et al (2009) The seasonal structure of microbial communities in the Western English Channel. Environ Microbiol 11:3132-3139.
    • (2009) Environ Microbiol , vol.11 , pp. 3132-3139
    • Gilbert, J.A.1    Field, D.2
  • 27
    • 78049420498 scopus 로고    scopus 로고
    • An insect herbivore microbiome with high plant biomassdegrading capacity
    • Suen G, Scott JJ et al (2010) An insect herbivore microbiome with high plant biomassdegrading capacity. PLoS Genet 6(9)
    • (2010) PLoS Genet , vol.6 , Issue.9
    • Suen, G.1    Scott, J.J.2
  • 28
    • 60849095134 scopus 로고    scopus 로고
    • Quantifying environmental adaptation of metabolic pathways in metagenomics
    • Gianoulis TA, Raes J et al (2009) Quantifying environmental adaptation of metabolic pathways in metagenomics. Proc Natl Acad Sci U S A 106:1374-1379.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 1374-1379
    • Gianoulis, T.A.1    Raes, J.2
  • 30
    • 78649732106 scopus 로고    scopus 로고
    • The taxonomic and functional diversity of microbes at a temperate coastal site: A 'multi-omic' study of seasonal and diel temporal variation
    • Gilbert JA, Field D et al (2010) The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation. PLoS One 5:e15545.
    • (2010) PLoS One , vol.5
    • Gilbert, J.A.1    Field, D.2
  • 31
    • 33750976398 scopus 로고    scopus 로고
    • MetaGene: Prokaryotic gene finding from environmental genome shotgun sequences
    • DOI 10.1093/nar/gkl723
    • Noguchi H, Park J et al (2006) MetaGene: prokaryotic gene fi nding from environmental genome shotgun sequences. Nucleic Acids Res 34:5623-5630. (Pubitemid 44742449)
    • (2006) Nucleic Acids Research , vol.34 , Issue.19 , pp. 5623-5630
    • Noguchi, H.1    Park, J.2    Takagi, T.3
  • 32
    • 0026055308 scopus 로고
    • A classi fi cation of glycosyl hydrolases based on amino acid sequence similarities
    • Henrissat B (1991) A classi fi cation of glycosyl hydrolases based on amino acid sequence similarities. Biochem J 280:309-316.
    • (1991) Biochem J , vol.280 , pp. 309-316
    • Henrissat, B.1
  • 35
    • 3242885293 scopus 로고    scopus 로고
    • The PredictProtein server
    • DOI 10.1093/nar/gkh377
    • Rost B, Yachdav G, Liu J (2004) The PredictProtein Server. Nucleic Acids Res 32(Web Server issue):W321-W326. (Pubitemid 39004075)
    • (2004) Nucleic Acids Research , vol.32 , Issue.WEB SERVER ISS.
    • Rost, B.1    Yachdav, G.2    Liu, J.3
  • 36
    • 33846113652 scopus 로고    scopus 로고
    • TIGRFAMs and Genome Properties: Tools for the assignment of molecular function and biological process in prokaryotic genomes
    • DOI 10.1093/nar/gkl1043
    • Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O (2007) TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res 35(Database issue):D260-D264. (Pubitemid 46056210)
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 1
    • Selengut, J.D.1    Haft, D.H.2    Davidsen, T.3    Ganapathy, A.4    Gwinn-Giglio, M.5    Nelson, W.C.6    Richter, A.R.7    White, O.8
  • 37
    • 58149200943 scopus 로고    scopus 로고
    • The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics
    • Cantarel BL, Coutinho PM et al (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37(suppl 1):D233-238.
    • (2009) Nucleic Acids Res , vol.37 , Issue.SUPPL. 1
    • Cantarel, B.L.1    Coutinho, P.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.