-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G, The Gene Ontology Consortium (2000) Gene ontology: tool for the unification of biology. Nat Genet 25: 25-29
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
3
-
-
0029916911
-
The SWISS-PROT protein sequence data bank and its new supplement TREMBL
-
Bairoch A, Apweiler R (1996) The SWISS-PROT protein sequence data bank and its new supplement TREMBL. Nucleic Acids Res 24: 21-25.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 21-25
-
-
Bairoch, A.1
Apweiler, R.2
-
4
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S (2009) AmiGO: online access to ontology and annotation data. Bioinformatics 25: 288-289.
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
Ireland, A.2
Mungall, C.J.3
Shu, S.4
Marshall, B.5
Lewis, S.6
-
5
-
-
77956656511
-
Dra genome sequence of the oilseed species
-
Chan AP, Crabtree J, Zhao Q, Lorenzi H, Orvis J, Puiu D, Melake-Berhan A, Jones KM, Redman J, Chen G, Cahoon EB, Gedil M, Stanke M, Haas BJ, Wortman JR, Fraser-Liggett CM, Ravel J, Rabinowicz PD (2010) Dra genome sequence of the oilseed species Ricinus communis. Nat Biotechnol 28: 951-956.
-
(2010)
Ricinus communis. Nat Biotechnol
, vol.28
, pp. 951-956
-
-
Chan, A.P.1
Crabtree, J.2
Zhao, Q.3
Lorenzi, H.4
Orvis, J.5
Puiu, D.6
Melake-Berhan, A.7
Jones, K.M.8
Redman, J.9
Chen, G.10
Cahoon, E.B.11
Gedil, M.12
Stanke, M.13
Haas, B.J.14
Wortman, J.R.15
Fraser-Liggett, C.M.16
Ravel, J.17
Rabinowicz, P.D.18
-
6
-
-
77955197659
-
Transcriptome analysis of the oil-rich seed of the bioenergy crop Jatropha curcas L
-
Costa GG, Cardoso KC, Del Bem LE, Lima AC, Cunha MA, de Campos-Leite L, Vicentini R, Papes F, Moreira RC, Yunes JA, Campos FA, Da Silva MJ (2010) Transcriptome analysis of the oil-rich seed of the bioenergy crop Jatropha curcas L. BMC Genomics 11: 462
-
(2010)
BMC Genomics
, vol.11
, pp. 462
-
-
Costa, G.G.1
Cardoso, K.C.2
Del Bem, L.E.3
Lima, A.C.4
Cunha, M.A.5
de Campos-Leite, L.6
Vicentini, R.7
Papes, F.8
Moreira, R.C.9
Yunes, J.A.10
Campos, F.A.11
Da Silva, M.J.12
-
7
-
-
68849121751
-
Transcriptional activity of rice autonomous transposable element Dart
-
Fujino K, Matsuda Y, Sekiguchi H (2009) Transcriptional activity of rice autonomous transposable element Dart. J Plant Physiol 166: 1537-1543
-
(2009)
J Plant Physiol
, vol.166
, pp. 1537-1543
-
-
Fujino, K.1
Matsuda, Y.2
Sekiguchi, H.3
-
8
-
-
57749085421
-
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
-
Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH (2008) Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol 148: 993-1003
-
(2008)
Plant Physiol
, vol.148
, pp. 993-1003
-
-
Hanada, K.1
Zou, C.2
Lehti-Shiu, M.D.3
Shinozaki, K.4
Shiu, S.H.5
-
9
-
-
31544479520
-
Application of a superword array in genome assembly
-
Huang X, Yang SP, Chinwalla AT, Hillier LW, Minx P, Mardis ER, Wilson RK (2006) Application of a superword array in genome assembly. Nucleic Acids Res 34: 201-205
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 201-205
-
-
Huang, X.1
Yang, S.P.2
Chinwalla, A.T.3
Hillier, L.W.4
Minx, P.5
Mardis, E.R.6
Wilson, R.K.7
-
10
-
-
58149203231
-
InterPro: The integrative protein signature database
-
DATABASE ISSUE
-
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haff D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C (2009) InterPro: the integrative protein signature database. Nucleic Acids Res 37(Database issue): D211-D215
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bork, P.7
Das, U.8
Daugherty, L.9
Duquenne, L.10
Finn, R.D.11
Gough, J.12
Haff, D.13
Hulo, N.14
Kahn, D.15
Kelly, E.16
Laugraud, A.17
Letunic, I.18
Lonsdale, D.19
Lopez, R.20
Madera, M.21
Maslen, J.22
McAnulla, C.23
McDowall, J.24
Mistry, J.25
Mitchell, A.26
Mulder, N.27
Natale, D.28
Orengo, C.29
Quinn, A.F.30
Selengut, J.D.31
Sigrist, C.J.32
Thimma, M.33
Thomas, P.D.34
Valentin, F.35
Wilson, D.36
Wu, C.H.37
Yeats, C.38
more..
-
11
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 20: 265-272
-
(2010)
Genome Res
, vol.20
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
Shi, Z.6
Li, Y.7
Li, S.8
Shan, G.9
Kristiansen, K.10
Li, S.11
Yang, H.12
Wang, J.13
Wang, J.14
-
12
-
-
77958495542
-
Gene discovery from Jatropha curcas by sequencing of ESTs from normalized and full-length enriched cDNA library from developing seeds
-
Natarajan P, Kanagasabapathy D, Gunadayalan G, Panchalingam J, Shree N, Sugantham PA, Singh KK, Madasamy P (2010) Gene discovery from Jatropha curcas by sequencing of ESTs from normalized and full-length enriched cDNA library from developing seeds. BMC Genomics 11: 606
-
(2010)
BMC Genomics
, vol.11
, pp. 606
-
-
Natarajan, P.1
Kanagasabapathy, D.2
Gunadayalan, G.3
Panchalingam, J.4
Shree, N.5
Sugantham, P.A.6
Singh, K.K.7
Madasamy, P.8
-
13
-
-
0034739491
-
ATLN elements, LINEs from Arabidopsis thaliana: Identification and characterization
-
Noma K, Ohtsubo H, Ohtsubo E (2000) ATLN elements, LINEs from Arabidopsis thaliana: identification and characterization. DNA Res 7: 291-303
-
(2000)
DNA Res
, vol.7
, pp. 291-303
-
-
Noma, K.1
Ohtsubo, H.2
Ohtsubo, E.3
-
14
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M (1999) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 27: 29-34
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
15
-
-
56149088569
-
Genome structure of the legume, Lotus japonicus
-
Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, Fujishiro T, Katoh M, Kohara M, Kishida Y, Minami C, Nakayama S, Nakazaki N, Shimizu Y, Shinpo S, Takahashi C, Wada T, Yamada M, Ohmido N, Hayashi M, Fukui K, Baba T, Nakamichi T, Mori H, Tabata S (2008) Genome structure of the legume, Lotus japonicus. DNA Res 15: 227-239
-
(2008)
DNA Res
, vol.15
, pp. 227-239
-
-
Sato, S.1
Nakamura, Y.2
Kaneko, T.3
Asamizu, E.4
Kato, T.5
Nakao, M.6
Sasamoto, S.7
Watanabe, A.8
Ono, A.9
Kawashima, K.10
Fujishiro, T.11
Katoh, M.12
Kohara, M.13
Kishida, Y.14
Minami, C.15
Nakayama, S.16
Nakazaki, N.17
Shimizu, Y.18
Shinpo, S.19
Takahashi, C.20
Wada, T.21
Yamada, M.22
Ohmido, N.23
Hayashi, M.24
Fukui, K.25
Baba, T.26
Nakamichi, T.27
Mori, H.28
Tabata, S.29
more..
-
16
-
-
79951842938
-
Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L
-
Sato S, Hirakawa H, Isobe S, Fukai E, Watanabe A, Kato M, Kawashima K, Minami C, Muraki A, Nakazaki N, Takahashi C, Nakayama S, Kishida Y, Kohara M, Yamada M, Tsuruoka H, Sasamoto S, Tabata S, Aizu T, Toyoda A, Shin-i T, Minakuchi Y, Kohara Y, Fujiyama A, Tsuchimoto S, Kajiyama S, Makigano E, Ohmido N, Shibagaki N, Cartagena JA, Wada N, Kohinata T, Atefeh A, Yuasa S, Matsunaga S, Fukui K (2011) Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res 18: 65-76
-
(2011)
DNA Res
, vol.18
, pp. 65-76
-
-
Sato, S.1
Hirakawa, H.2
Isobe, S.3
Fukai, E.4
Watanabe, A.5
Kato, M.6
Kawashima, K.7
Minami, C.8
Muraki, A.9
Nakazaki, N.10
Takahashi, C.11
Nakayama, S.12
Kishida, Y.13
Kohara, M.14
Yamada, M.15
Tsuruoka, H.16
Sasamoto, S.17
Tabata, S.18
Aizu, T.19
Toyoda, A.20
Shin-i, T.21
Minakuchi, Y.22
Kohara, Y.23
Fujiyama, A.24
Tsuchimoto, S.25
Kajiyama, S.26
Makigano, E.27
Ohmido, N.28
Shibagaki, N.29
Cartagena, J.A.30
Wada, N.31
Kohinata, T.32
Atefeh, A.33
Yuasa, S.34
Matsunaga, S.35
Fukui, K.36
more..
-
18
-
-
78751641803
-
EST-derived SSR markers in Jatropha curcas L.: Development, characterization, polymorphism, and transferability across the species/genera
-
Yadav HK, Ranjan A, Asif MH, Mantri S, Sawant SV, Tuli R (2011) EST-derived SSR markers in Jatropha curcas L.: development, characterization, polymorphism, and transferability across the species/genera. Tree Genet Genomes 7: 207-219
-
(2011)
Tree Genet Genomes
, vol.7
, pp. 207-219
-
-
Yadav, H.K.1
Ranjan, A.2
Asif, M.H.3
Mantri, S.4
Sawant, S.V.5
Tuli, R.6
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