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Volumn 80, Issue 3, 2012, Pages 239-248

Pocketcheck: Updating the HLA class I peptide specificity roadmap

Author keywords

Crystal structure; Histocompatibility; Peptide binding motif; Pockets; Polymorphism; Stem cell transplantation

Indexed keywords

AMINO ACID; HLA ANTIGEN CLASS 1; HLA B44 ANTIGEN;

EID: 84864794833     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2012.01928.x     Document Type: Article
Times cited : (16)

References (25)
  • 1
    • 78650992438 scopus 로고    scopus 로고
    • The impact of human leukocyte antigen (HLA) micropolymorphism on ligand specificity within the HLA-B*41 allotypic family
    • Bade-Doding C, Theodossis A, Gras S et al. The impact of human leukocyte antigen (HLA) micropolymorphism on ligand specificity within the HLA-B*41 allotypic family. Haematologica 2011: 96: 110-8.
    • (2011) Haematologica , vol.96 , pp. 110-118
    • Bade-Doding, C.1    Theodossis, A.2    Gras, S.3
  • 2
    • 33847785568 scopus 로고    scopus 로고
    • Amino acid 95 causes strong alteration of peptide position Pomega in HLA-B*41 variants
    • Bade-Doeding C, DeLuca DS, Seltsam A, Blasczyk R, Eiz-Vesper B. Amino acid 95 causes strong alteration of peptide position Pomega in HLA-B*41 variants. Immunogenetics 2007: 59: 253-9.
    • (2007) Immunogenetics , vol.59 , pp. 253-259
    • Bade-Doeding, C.1    DeLuca, D.S.2    Seltsam, A.3    Blasczyk, R.4    Eiz-Vesper, B.5
  • 4
    • 2942529423 scopus 로고    scopus 로고
    • A single amino-acid polymorphism in pocket A of HLA-A*6602 alters the auxiliary anchors compared with HLA-A*6601 ligands
    • Bade-Doeding C, Elsner HA, Eiz-Vesper B, Seltsam A, Holtkamp U, Blasczyk R. A single amino-acid polymorphism in pocket A of HLA-A*6602 alters the auxiliary anchors compared with HLA-A*6601 ligands. Immunogenetics 2004: 56: 83-8.
    • (2004) Immunogenetics , vol.56 , pp. 83-88
    • Bade-Doeding, C.1    Elsner, H.A.2    Eiz-Vesper, B.3    Seltsam, A.4    Holtkamp, U.5    Blasczyk, R.6
  • 5
    • 80053892968 scopus 로고    scopus 로고
    • The composition of the F pocket in HLA-A*74 generates C-terminal promiscuity among its bound peptides
    • Bade-Doeding C, Huyton T, Eiz-Vesper B, Blasczyk R. The composition of the F pocket in HLA-A*74 generates C-terminal promiscuity among its bound peptides. Tissue Antigens 2011.
    • (2011) Tissue Antigens
    • Bade-Doeding, C.1    Huyton, T.2    Eiz-Vesper, B.3    Blasczyk, R.4
  • 6
    • 78149401671 scopus 로고    scopus 로고
    • Polymorphism between HLA-A*0301 and A*0302 located outside the pocket F alters the POmega peptide motif
    • Elamin NE, Bade-Doeding C, Blasczyk R, Eiz-Vesper B. Polymorphism between HLA-A*0301 and A*0302 located outside the pocket F alters the POmega peptide motif. Tissue Antigens 2010: 76: 487-90.
    • (2010) Tissue Antigens , vol.76 , pp. 487-490
    • Elamin, N.E.1    Bade-Doeding, C.2    Blasczyk, R.3    Eiz-Vesper, B.4
  • 7
    • 0033925353 scopus 로고    scopus 로고
    • Definition of peptide binding motifs amongst the HLA-A*30 allelic group
    • Krausa P, Munz C, Keilholz W et al. Definition of peptide binding motifs amongst the HLA-A*30 allelic group. Tissue Antigens 2000: 56: 10-8.
    • (2000) Tissue Antigens , vol.56 , pp. 10-18
    • Krausa, P.1    Munz, C.2    Keilholz, W.3
  • 12
    • 0025831493 scopus 로고
    • Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 A resolution
    • Saper MA, Bjorkman PJ, Wiley DC. Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 A resolution. J Mol Biol 1991: 219: 277-319.
    • (1991) J Mol Biol , vol.219 , pp. 277-319
    • Saper, M.A.1    Bjorkman, P.J.2    Wiley, D.C.3
  • 13
    • 0029956865 scopus 로고    scopus 로고
    • A roadmap for HLA-A, HLA-B, and HLA-C peptide binding specificities
    • Chelvanayagam G. A roadmap for HLA-A, HLA-B, and HLA-C peptide binding specificities. Immunogenetics 1996: 45: 15-26.
    • (1996) Immunogenetics , vol.45 , pp. 15-26
    • Chelvanayagam, G.1
  • 14
    • 0017187836 scopus 로고
    • The nature of the accessible and buried surfaces in proteins
    • Chothia C. The nature of the accessible and buried surfaces in proteins. J Mol Biol 1976: 105: 1-12.
    • (1976) J Mol Biol , vol.105 , pp. 1-12
    • Chothia, C.1
  • 15
    • 80054121332 scopus 로고    scopus 로고
    • Mismatches outside exons 2 and 3 do not alter the peptide motif of the allele group B*44:02P
    • Bade-Doeding C, Cano P, Huyton T et al. Mismatches outside exons 2 and 3 do not alter the peptide motif of the allele group B*44:02P. Hum Immunol 2011: 72: 1039-44.
    • (2011) Hum Immunol , vol.72 , pp. 1039-1044
    • Bade-Doeding, C.1    Cano, P.2    Huyton, T.3
  • 16
    • 0027286502 scopus 로고
    • MASCOT: multiple alignment system for protein sequences based on three-way dynamic programming
    • Hirosawa M, Hoshida M, Ishikawa M, Toya T. MASCOT: multiple alignment system for protein sequences based on three-way dynamic programming. Comput Appl Biosci 1993: 9: 161-7.
    • (1993) Comput Appl Biosci , vol.9 , pp. 161-167
    • Hirosawa, M.1    Hoshida, M.2    Ishikawa, M.3    Toya, T.4
  • 17
    • 84855213587 scopus 로고    scopus 로고
    • Position 156 influences the peptide repertoire and tapasin dependency of human leukocyte antigen B*44 allotypes
    • Badrinath S, Saunders P, Huyton T et al. Position 156 influences the peptide repertoire and tapasin dependency of human leukocyte antigen B*44 allotypes. Haematologica 2012: 97: 98-106.
    • (2012) Haematologica , vol.97 , pp. 98-106
    • Badrinath, S.1    Saunders, P.2    Huyton, T.3
  • 18
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling
    • Guex N, Peitsch MC. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997: 18: 2714-23.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 19
    • 77950374922 scopus 로고    scopus 로고
    • Constraints within major histocompatibility complex class I restricted peptides: presentation and consequences for T-cell recognition
    • Theodossis A, Guillonneau C, Welland A et al. Constraints within major histocompatibility complex class I restricted peptides: presentation and consequences for T-cell recognition. Proc Natl Acad Sci U S A 2010: 107: 5534-9.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 5534-5539
    • Theodossis, A.1    Guillonneau, C.2    Welland, A.3
  • 20
    • 33845790971 scopus 로고    scopus 로고
    • A modular concept of HLA for comprehensive peptide binding prediction
    • DeLuca DS, Khattab B, Blasczyk R. A modular concept of HLA for comprehensive peptide binding prediction. Immunogenetics 2007: 59: 25-35.
    • (2007) Immunogenetics , vol.59 , pp. 25-35
    • DeLuca, D.S.1    Khattab, B.2    Blasczyk, R.3
  • 21
    • 0034669913 scopus 로고    scopus 로고
    • The noncoding regions of HLA-DRB uncover interlineage recombinations as a mechanism of HLA diversification
    • Kotsch K, Blasczyk R. The noncoding regions of HLA-DRB uncover interlineage recombinations as a mechanism of HLA diversification. J Immunol 2000: 165: 5664-70.
    • (2000) J Immunol , vol.165 , pp. 5664-5670
    • Kotsch, K.1    Blasczyk, R.2
  • 22
    • 84872500341 scopus 로고    scopus 로고
    • The impact of human leucocyte antigen (HLA) micropolymorphism on ligand specificity within the HLA-B*41 allotypic family
    • Bade-Doeding C, Theodossis A, Gras S et al. The impact of human leucocyte antigen (HLA) micropolymorphism on ligand specificity within the HLA-B*41 allotypic family. Haematologica 2010.
    • (2010) Haematologica
    • Bade-Doeding, C.1    Theodossis, A.2    Gras, S.3
  • 23
    • 0035863732 scopus 로고    scopus 로고
    • Quantitative and qualitative influences of tapasin on the class I peptide repertoire
    • Purcell AW, Gorman JJ, Garcia-Peydro M et al. Quantitative and qualitative influences of tapasin on the class I peptide repertoire. J Immunol 2001: 166: 1016-27.
    • (2001) J Immunol , vol.166 , pp. 1016-1027
    • Purcell, A.W.1    Gorman, J.J.2    Garcia-Peydro, M.3
  • 24
    • 84855213587 scopus 로고    scopus 로고
    • Position 156 influences the peptide repertoire and tapasin dependency of human leucocyte antigen B*44 allotypes
    • Badrinath S, Saunders P, Huyton T et al. Position 156 influences the peptide repertoire and tapasin dependency of human leucocyte antigen B*44 allotypes. Haematologica 2012: 97: 98-106.
    • (2012) Haematologica , vol.97 , pp. 98-106
    • Badrinath, S.1    Saunders, P.2    Huyton, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.