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Volumn 59, Issue 1, 2007, Pages 25-35

A modular concept of HLA for comprehensive peptide binding prediction

Author keywords

Histocompatibility Antigens class I; Variation (genetics) immunology

Indexed keywords

HLA A ANTIGEN;

EID: 33845790971     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-006-0176-4     Document Type: Article
Times cited : (20)

References (32)
  • 1
    • 2942529423 scopus 로고    scopus 로고
    • A single amino-acid polymorphism in pocket a of HLA-A*6602 alters the auxiliary anchors compared with HLA-A*6601 ligands
    • Bade-Doeding C, Elsner HA, Eiz-Vesper B, Seltsam A, Holtkamp U, Blasczyk R (2004) A single amino-acid polymorphism in pocket A of HLA-A*6602 alters the auxiliary anchors compared with HLA-A*6601 ligands. Immunogenetics 56:83-88
    • (2004) Immunogenetics , vol.56 , pp. 83-88
    • Bade-Doeding, C.1    Elsner, H.A.2    Eiz-Vesper, B.3    Seltsam, A.4    Holtkamp, U.5    Blasczyk, R.6
  • 3
    • 1342268087 scopus 로고    scopus 로고
    • Analysis and prediction of affinity of TAP binding peptides using cascade SVM
    • Bhasin M, Raghava GP (2004) Analysis and prediction of affinity of TAP binding peptides using cascade SVM. Protein Sci 13:596-607
    • (2004) Protein Sci , vol.13 , pp. 596-607
    • Bhasin, M.1    Raghava, G.P.2
  • 4
    • 0037461027 scopus 로고    scopus 로고
    • MHCBN: A comprehensive database ofMHC binding and non-binding peptides
    • Bhasin M, Singh H, Raghava GP (2003) MHCBN: a comprehensive database ofMHC binding and non-binding peptides. Bioinformatics 19:665-666
    • (2003) Bioinformatics , vol.19 , pp. 665-666
    • Bhasin, M.1    Singh, H.2    Raghava, G.P.3
  • 6
    • 0029956865 scopus 로고    scopus 로고
    • A roadmap for HLA-A HLA-B and HLA-C peptide binding specificities
    • Chelvanayagam G (1996) A roadmap for HLA-A HLA-B and HLA-C peptide binding specificities. Immunogenetics 45:15-26
    • (1996) Immunogenetics , vol.45 , pp. 15-26
    • Chelvanayagam, G.1
  • 7
    • 3042697402 scopus 로고    scopus 로고
    • A novel predictive technique for the MHC class II peptide-binding interaction
    • Davies MN, Sansom CE, Beazley C, Moss DS (2003) A novel predictive technique for the MHC class II peptide-binding interaction. Mol Med 9:220-225
    • (2003) Mol Med , vol.9 , pp. 220-225
    • Davies, M.N.1    Sansom, C.E.2    Beazley, C.3    Moss, D.S.4
  • 8
    • 0142174642 scopus 로고    scopus 로고
    • Prediction of MHC class I binding peptides using SVMHC
    • Donnes P, Elofsson A (2002) Prediction of MHC class I binding peptides using SVMHC. BMC Bioinformatics 3:25
    • (2002) BMC Bioinformatics , vol.3 , pp. 25
    • Donnes, P.1    Elofsson, A.2
  • 9
    • 23644443226 scopus 로고    scopus 로고
    • Integrated modeling of the major events in the MHC class I antigen processing pathway
    • Donnes P, Kohlbacher O (2005) Integrated modeling of the major events in the MHC class I antigen processing pathway. Protein Sci 14:2132-2140
    • (2005) Protein Sci , vol.14 , pp. 2132-2140
    • Donnes, P.1    Kohlbacher, O.2
  • 10
    • 33645636041 scopus 로고    scopus 로고
    • Class I T-cell epitope prediction: Improvements using a combination of proteasome cleavage TAP affinity and MHC binding
    • Doytchinova IA, Flower DR (2006) Class I T-cell epitope prediction: improvements using a combination of proteasome cleavage TAP affinity and MHC binding. Mol Immunol 43:2037-2044
    • (2006) Mol Immunol , vol.43 , pp. 2037-2044
    • Doytchinova, I.A.1    Flower, D.R.2
  • 11
    • 0024246812 scopus 로고
    • Recognition of influenza A matrix protein by HLA-A2-restricted cytotoxic T lymphocytes. Use of analogues to orientate the matrix peptide in the HLA-A2 binding site
    • Gotch F, McMichael A, Rothbard J (1988) Recognition of influenza A matrix protein by HLA-A2-restricted cytotoxic T lymphocytes. Use of analogues to orientate the matrix peptide in the HLA-A2 binding site. J Exp Med 168:2045-2057
    • (1988) J Exp Med , vol.168 , pp. 2045-2057
    • Gotch, F.1    McMichael, A.2    Rothbard, J.3
  • 14
    • 14844286852 scopus 로고    scopus 로고
    • Immunotherapy of cancer through targeting of minor histocompatibility antigens
    • Hambach L, Goulmy E (2005) Immunotherapy of cancer through targeting of minor histocompatibility antigens. Curr Opin Immunol 17:202-210
    • (2005) Curr Opin Immunol , vol.17 , pp. 202-210
    • Hambach, L.1    Goulmy, E.2
  • 15
    • 0034669913 scopus 로고    scopus 로고
    • The noncoding regions of HLA-DRB uncover interlineage recombinations as a mechanism of HLA diversification
    • Kotsch K, Blasczyk R (2000) The noncoding regions of HLA-DRB uncover interlineage recombinations as a mechanism of HLA diversification. J Immunol 165:5664-5670
    • (2000) J Immunol , vol.165 , pp. 5664-5670
    • Kotsch, K.1    Blasczyk, R.2
  • 16
    • 23844528191 scopus 로고    scopus 로고
    • An integrative approach to CTL epitope prediction: A combined algorithm integrating MHC class I binding TAP transport efficiency and proteasomal cleavage predictions
    • Larsen MV, Lundegaard C, Lamberth K, Buus S, Brunak S, Lund O, Nielsen M (2005) An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding TAP transport efficiency and proteasomal cleavage predictions. Eur J Immunol 35:2295-2303
    • (2005) Eur J Immunol , vol.35 , pp. 2295-2303
    • Larsen, M.V.1    Lundegaard, C.2    Lamberth, K.3    Buus, S.4    Brunak, S.5    Lund, O.6    Nielsen, M.7
  • 18
    • 0036399733 scopus 로고    scopus 로고
    • Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules
    • Noguchi H, Kato R, Hanai T, Matsubara Y, Honda H, Brusic V, Kobayashi T (2002) Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules. J Biosci Bioeng 94:264-270
    • (2002) J Biosci Bioeng , vol.94 , pp. 264-270
    • Noguchi, H.1    Kato, R.2    Hanai, T.3    Matsubara, Y.4    Honda, H.5    Brusic, V.6    Kobayashi, T.7
  • 19
    • 0028052724 scopus 로고
    • Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
    • Parker KC, Bednarek MA, Coligan JE (1994) Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J Immunol 152:163-75
    • (1994) J Immunol , vol.152 , pp. 163-175
    • Parker, K.C.1    Bednarek, M.A.2    Coligan, J.E.3
  • 21
    • 0042665284 scopus 로고    scopus 로고
    • Sequence variability analysis of human class I and class II MHC molecules: Functional and structural correlates of amino acid polymorphisms
    • Reche PA, Reinherz EL (2003) Sequence variability analysis of human class I and class II MHC molecules: functional and structural correlates of amino acid polymorphisms. J Mol Biol 331:623-641
    • (2003) J Mol Biol , vol.331 , pp. 623-641
    • Reche, P.A.1    Reinherz, E.L.2
  • 22
    • 5444249860 scopus 로고    scopus 로고
    • Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles
    • Reche PA, Glutting JP, Zhang H, Reinherz EL (2004) Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles. Immunogenetics 56:405-419
    • (2004) Immunogenetics , vol.56 , pp. 405-419
    • Reche, P.A.1    Glutting, J.P.2    Zhang, H.3    Reinherz, E.L.4
  • 24
    • 0028135684 scopus 로고
    • Molecular dynamics simulation of MHC-peptide complexes as a tool for predicting potential T cell epitopes
    • Rognan D, Scapozza L, Folkers G, Daser A (1994) Molecular dynamics simulation of MHC-peptide complexes as a tool for predicting potential T cell epitopes. Biochemistry 33:11476-11486
    • (1994) Biochemistry , vol.33 , pp. 11476-11486
    • Rognan, D.1    Scapozza, L.2    Folkers, G.3    Daser, A.4
  • 25
    • 0026484052 scopus 로고
    • Synthetic peptides as vaccines
    • Rothbard JB (1992) Synthetic peptides as vaccines. Biotechnology 20:451-465
    • (1992) Biotechnology , vol.20 , pp. 451-465
    • Rothbard, J.B.1
  • 26
    • 0033388724 scopus 로고    scopus 로고
    • Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism
    • Sette A, Sidney J (1999) Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism. Immunogenetics 50:201-212
    • (1999) Immunogenetics , vol.50 , pp. 201-212
    • Sette, A.1    Sidney, J.2
  • 29
    • 26444518809 scopus 로고    scopus 로고
    • Predicting protein-peptide binding affinity by learning peptide-peptide distance functions
    • Yanover C, Hertz T (2005) Predicting protein-peptide binding affinity by learning peptide-peptide distance functions. Lect Notes Comput Sci 3500:456-471
    • (2005) Lect Notes Comput Sci , vol.3500 , pp. 456-471
    • Yanover, C.1    Hertz, T.2
  • 30
    • 0033046472 scopus 로고    scopus 로고
    • Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses
    • Yewdell JW, Bennink JR (1999) Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses. Annu Rev Immunol 17:51-88
    • (1999) Annu Rev Immunol , vol.17 , pp. 51-88
    • Yewdell, J.W.1    Bennink, J.R.2
  • 31
    • 33845798193 scopus 로고    scopus 로고
    • PREDTAP: A system for prediction of peptide binding to the human transporter associated with antigen processing
    • Zhang GL, Petrovsky N, Kwoh CK, August JT, Brusic V (2006) PREDTAP: a system for prediction of peptide binding to the human transporter associated with antigen processing. Immunome Res 2:3
    • (2006) Immunome Res , vol.2 , pp. 3
    • Zhang, G.L.1    Petrovsky, N.2    Kwoh, C.K.3    August, J.T.4    Brusic, V.5
  • 32
    • 33745593748 scopus 로고    scopus 로고
    • Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules
    • Zhu S, Udaka K, Sidney J, Sette A, Aoki-Kinoshita KF, Mamitsuka H (2006) Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules. Bioinformatics 22:1648-55
    • (2006) Bioinformatics , vol.22 , pp. 1648-1655
    • Zhu, S.1    Udaka, K.2    Sidney, J.3    Sette, A.4    Aoki-Kinoshita, K.F.5    Mamitsuka, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.