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Volumn 3, Issue 9, 2008, Pages 1476-1484

High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; CONTROLLED STUDY; DNA CLEAVAGE; ENZYME LOCALIZATION; FEMALE; GENE AMPLIFICATION; GENE SEQUENCE; GENOMIC FRAGMENT; GENOTYPE; HUMAN; HUMAN CELL; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR RECOGNITION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ANALYSIS; WART VIRUS;

EID: 51649100313     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2008.136     Document Type: Article
Times cited : (37)

References (40)
  • 1
    • 0037421589 scopus 로고    scopus 로고
    • Epidemiologic classification of human papillomavirus types associated with cervical cancer
    • Muñoz, N. et al. Epidemiologic classification of human papillomavirus types associated with cervical cancer. N. Engl. J. Med. 348, 518-527 (2003).
    • (2003) N. Engl. J. Med , vol.348 , pp. 518-527
    • Muñoz, N.1
  • 2
    • 0033864972 scopus 로고    scopus 로고
    • Identification of multiple genital HPV types and sequence variants by consensus and nested type-specific PCR coupled with cycle sequencing
    • Chow, V.T., Loh, E., Yeo, W.M., Tan, S.Y. & Chan, R. Identification of multiple genital HPV types and sequence variants by consensus and nested type-specific PCR coupled with cycle sequencing. Pathology 32 204-208 (2000).
    • (2000) Pathology , vol.32 , pp. 204-208
    • Chow, V.T.1    Loh, E.2    Yeo, W.M.3    Tan, S.Y.4    Chan, R.5
  • 3
    • 0034862161 scopus 로고    scopus 로고
    • One-step detection and genotyping of human papillomavirus in cervical samples by reverse hybridization
    • Laconi, S. et al. One-step detection and genotyping of human papillomavirus in cervical samples by reverse hybridization. Diagn. Mol. Pathol. 10, 200-206 (2001).
    • (2001) Diagn. Mol. Pathol , vol.10 , pp. 200-206
    • Laconi, S.1
  • 4
    • 0034162683 scopus 로고    scopus 로고
    • Human papillomavirus testing for triage of women with cytologic evidence of low-grade squamous intraepithelial lesions: Baseline data from a randomized trial. The Atypical Squamous Cells of Undetermined Significance/Low-Grade Squamous Intraepithetial Lesions Triage Study (ALTS) Group. J. Natl. Cancer Inst. 92, 397-402 2000
    • Human papillomavirus testing for triage of women with cytologic evidence of low-grade squamous intraepithelial lesions: Baseline data from a randomized trial. The Atypical Squamous Cells of Undetermined Significance/Low-Grade Squamous Intraepithetial Lesions Triage Study (ALTS) Group. J. Natl. Cancer Inst. 92, 397-402 (2000).
  • 5
    • 0034901749 scopus 로고    scopus 로고
    • Detection of high-risk HPV types by the hybrid capture 2 test
    • Terry, G. et al. Detection of high-risk HPV types by the hybrid capture 2 test. J. Med. Virol. 65, 155-162 (2001).
    • (2001) J. Med. Virol , vol.65 , pp. 155-162
    • Terry, G.1
  • 6
    • 0027215213 scopus 로고
    • Epidemiologic evidence showing that human papillomavirus infection causes most cervical intraepithelial neoplasia
    • Schiffman, M.H. et al. Epidemiologic evidence showing that human papillomavirus infection causes most cervical intraepithelial neoplasia. J. Natl. Cancer Inst 85, 958-964 (1993).
    • (1993) J. Natl. Cancer Inst , vol.85 , pp. 958-964
    • Schiffman, M.H.1
  • 7
    • 0032840918 scopus 로고    scopus 로고
    • Human papillomavirus is a necessary cause of invasive cervical cancer worldwide
    • Walboomers, J.M. et al. Human papillomavirus is a necessary cause of invasive cervical cancer worldwide. J. Pathol. 189, 12-19 (1999).
    • (1999) J. Pathol , vol.189 , pp. 12-19
    • Walboomers, J.M.1
  • 8
    • 19944387604 scopus 로고    scopus 로고
    • Long-term protective effect of high-risk human papillomavirus testing in population-based cervical screening
    • Bulkmans, N.W., Rozendaa, L., Voorhorst, F.J., Snijders, P.J. & Meijer, C.J. Long-term protective effect of high-risk human papillomavirus testing in population-based cervical screening. Br. J. Cancer 92, 1800-1802 (2005).
    • (2005) Br. J. Cancer , vol.92 , pp. 1800-1802
    • Bulkmans, N.W.1    Rozendaa, L.2    Voorhorst, F.J.3    Snijders, P.J.4    Meijer, C.J.5
  • 9
    • 2642566084 scopus 로고    scopus 로고
    • Negative human papillomavirus testing in normal smears selects a population at low risk for developing high-grade cervical lesions
    • Clavel, C. et al. Negative human papillomavirus testing in normal smears selects a population at low risk for developing high-grade cervical lesions. Br. J. Cancer 90, 1803-1808 (2004).
    • (2004) Br. J. Cancer , vol.90 , pp. 1803-1808
    • Clavel, C.1
  • 10
    • 0030890116 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism identification assays using a thermostable DNA polymerase and delayed extraction MALDI-TOF mass spectrometry
    • Haff, L.A. & Smimov, I.P. Single-nucleotide polymorphism identification assays using a thermostable DNA polymerase and delayed extraction MALDI-TOF mass spectrometry. Genome Res. 7, 378-388 (1997).
    • (1997) Genome Res , vol.7 , pp. 378-388
    • Haff, L.A.1    Smimov, I.P.2
  • 11
    • 0031788069 scopus 로고    scopus 로고
    • Genotyping by mass spectrometric analysis of short DNA fragments
    • Laken, S.J. et al. Genotyping by mass spectrometric analysis of short DNA fragments. Nat. Biotechnol. 16, 1352-1356 (1998).
    • (1998) Nat. Biotechnol , vol.16 , pp. 1352-1356
    • Laken, S.J.1
  • 12
    • 0031734601 scopus 로고    scopus 로고
    • High level multiplex genotyping by MALDI-TOF mass spectrometry
    • Ross, P., Hall, L., Smimov, I.P. & Haff, L. High level multiplex genotyping by MALDI-TOF mass spectrometry. Nat. Biotechnol. 16 1347-1351 (1998).
    • (1998) Nat. Biotechnol , vol.16 , pp. 1347-1351
    • Ross, P.1    Hall, L.2    Smimov, I.P.3    Haff, L.4
  • 13
    • 0035405980 scopus 로고    scopus 로고
    • Rapid characterization of DNA oligomers and genotyping of single nucleotide polymorphism using nucleotide-specific mass tags
    • Abdi, F., Bradbury, E.M., Doggett, N. & Chen, X. Rapid characterization of DNA oligomers and genotyping of single nucleotide polymorphism using nucleotide-specific mass tags. Nucleic Acids Res. 29, 61 (2001).
    • (2001) Nucleic Acids Res , vol.29 , pp. 61
    • Abdi, F.1    Bradbury, E.M.2    Doggett, N.3    Chen, X.4
  • 14
    • 0037143627 scopus 로고    scopus 로고
    • A genotyping strategy based on incorporation and cleavage of chemically modified nucleotides
    • Wolfe, J.L. et al. A genotyping strategy based on incorporation and cleavage of chemically modified nucleotides. Proc. Natl. Acad. Sci. USA 99, 11073-11078 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11073-11078
    • Wolfe, J.L.1
  • 15
    • 33644856283 scopus 로고    scopus 로고
    • SNP genotyping using atkati cleavage of RNA/DNA chimeras and MALDI time-of-flight mass spectrometry
    • Mauger, F. et al. SNP genotyping using atkati cleavage of RNA/DNA chimeras and MALDI time-of-flight mass spectrometry. Nucleic Acids Res. 34, e18 (2006).
    • (2006) Nucleic Acids Res , vol.34
    • Mauger, F.1
  • 16
    • 34248680163 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms: Analysis by mass spectrometry
    • Sauer, S., Reinhardt, R., Lehrach, H. & Gut, I.G. Single-nucleotide polymorphisms: Analysis by mass spectrometry. Nat. Protoc. 1 1761-1771 (2006).
    • (2006) Nat. Protoc , vol.1 , pp. 1761-1771
    • Sauer, S.1    Reinhardt, R.2    Lehrach, H.3    Gut, I.G.4
  • 17
    • 0033971684 scopus 로고    scopus 로고
    • Line probe assay for monitoring drug resistance in hepatitis B virus-infected patients during antiviral therapy
    • Stuyver, L. et al. Line probe assay for monitoring drug resistance in hepatitis B virus-infected patients during antiviral therapy. J. Clin. Microbiol. 38, 702-707 (2000).
    • (2000) J. Clin. Microbiol , vol.38 , pp. 702-707
    • Stuyver, L.1
  • 19
    • 20444466073 scopus 로고    scopus 로고
    • Evaluation of methods for monitoring drug resistance in chronic hepatitis B patients during lamivudine therapy based on mass spectrometry and reverse hybridization
    • Kim, H.S. et al. Evaluation of methods for monitoring drug resistance in chronic hepatitis B patients during lamivudine therapy based on mass spectrometry and reverse hybridization. Antivir. Ther. 10, 441-449 (2005).
    • (2005) Antivir. Ther , vol.10 , pp. 441-449
    • Kim, H.S.1
  • 20
    • 11144357081 scopus 로고    scopus 로고
    • Detection of hepatitis B virus YMDD variants using mass spectrometric analysis of oligonucleotide fragments
    • Hong, S.P. et al. Detection of hepatitis B virus YMDD variants using mass spectrometric analysis of oligonucleotide fragments. J. Hepatol. 40, 837-844 (2004).
    • (2004) J. Hepatol , vol.40 , pp. 837-844
    • Hong, S.P.1
  • 21
    • 23444455496 scopus 로고    scopus 로고
    • Population genotyping of hepatitis C virus by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis of short DNA fragments
    • Kim, Y.J. et al. Population genotyping of hepatitis C virus by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis of short DNA fragments. Clin. Chem. 51 1123-1131 (2005).
    • (2005) Clin. Chem , vol.51 , pp. 1123-1131
    • Kim, Y.J.1
  • 22
  • 23
    • 33645983661 scopus 로고    scopus 로고
    • Predominance of hepatitis B virus YMDD mutants is prognostic of virat DNA breakthrough
    • Lee, C.H. et al. Predominance of hepatitis B virus YMDD mutants is prognostic of virat DNA breakthrough. Gastroenterology 130, 1144-1152 (2006).
    • (2006) Gastroenterology , vol.130 , pp. 1144-1152
    • Lee, C.H.1
  • 24
    • 33749170143 scopus 로고    scopus 로고
    • Resistance to adefovir dipivoxil in lamivudine-resistant chronic hepatitis B patients treated with adefovir dipivoxil
    • Yeon, J.E. et al. Resistance to adefovir dipivoxil in lamivudine-resistant chronic hepatitis B patients treated with adefovir dipivoxil. Gut 55, 1488-1495 (2006).
    • (2006) Gut , vol.55 , pp. 1488-1495
    • Yeon, J.E.1
  • 25
    • 33745793641 scopus 로고    scopus 로고
    • Clinical impact of early detection for YMDD mutant on the outcomes of long-term lamivudine therapy in patients with chronic hepatitis B
    • Paik, Y.H. et al. Clinical impact of early detection for YMDD mutant on the outcomes of long-term lamivudine therapy in patients with chronic hepatitis B. Antivir. Ther. 11, 447-455 (2006).
    • (2006) Antivir. Ther , vol.11 , pp. 447-455
    • Paik, Y.H.1
  • 26
    • 33745570056 scopus 로고    scopus 로고
    • Increased risk of adefovir resistance in patients with lamivudine-resistant chronic hepatitis B after 48 weeks of adefovir dipivoxil monotherapy
    • Lee, Y.S. et al. Increased risk of adefovir resistance in patients with lamivudine-resistant chronic hepatitis B after 48 weeks of adefovir dipivoxil monotherapy. Hepatology 43, 1385-1391 (2006).
    • (2006) Hepatology , vol.43 , pp. 1385-1391
    • Lee, Y.S.1
  • 27
    • 51649130161 scopus 로고    scopus 로고
    • Chung, H.J. et al. Comparison of efficacy of human papilloma virus genotyping assays using restriction fragment mass polymorphism and DNA chip analysis in patients with abnormal pap smear and uterine cervical cancer. Korean J. Pathol. 40, 439-347 (2006).
    • Chung, H.J. et al. Comparison of efficacy of human papilloma virus genotyping assays using restriction fragment mass polymorphism and DNA chip analysis in patients with abnormal pap smear and uterine cervical cancer. Korean J. Pathol. 40, 439-347 (2006).
  • 28
    • 50949166681 scopus 로고    scopus 로고
    • Human papilloma virus genotyping assay using restriction fragment mass polymorphism analysis, and its comparison with sequencing and hybrid capture assays
    • Lee, E.H. et al. Human papilloma virus genotyping assay using restriction fragment mass polymorphism analysis, and its comparison with sequencing and hybrid capture assays. Korean J. Lab. Med. 27 62-68 (2007).
    • (2007) Korean J. Lab. Med , vol.27 , pp. 62-68
    • Lee, E.H.1
  • 29
    • 33750571393 scopus 로고    scopus 로고
    • Association of genetic variations in CCR5 and its ligand, RANTES with clearance of hepatitis B virus in Korea
    • Ahn, S.H. et al. Association of genetic variations in CCR5 and its ligand, RANTES with clearance of hepatitis B virus in Korea. J. Med. Virol. 78, 1564-1571 (2006).
    • (2006) J. Med. Virol , vol.78 , pp. 1564-1571
    • Ahn, S.H.1
  • 30
    • 37049028637 scopus 로고    scopus 로고
    • Effective screening of informative single nucleotide polymorphisms using the novel method of restriction fragment mass polymorphism
    • Hwang, S.H., Oh, H.B., Choi, S.E., Hong, S.P. & Yoo, W. Effective screening of informative single nucleotide polymorphisms using the novel method of restriction fragment mass polymorphism. J. Int. Med. Res. 35, 827-835 (2007).
    • (2007) J. Int. Med. Res , vol.35 , pp. 827-835
    • Hwang, S.H.1    Oh, H.B.2    Choi, S.E.3    Hong, S.P.4    Yoo, W.5
  • 31
    • 34547979951 scopus 로고    scopus 로고
    • Efficacy of dose escalation of imatinib mesylate in patients with cytogenetic or hematologic resistance
    • Sohn, S.K. et al. Efficacy of dose escalation of imatinib mesylate in patients with cytogenetic or hematologic resistance. Leuk. Lymphoma 48, 1659-1661 (2007).
    • (2007) Leuk. Lymphoma , vol.48 , pp. 1659-1661
    • Sohn, S.K.1
  • 32
    • 0034877614 scopus 로고    scopus 로고
    • Application of DNA-binding polymers for preparation of DNA for analysis by matrix-assisted laser desorption/ionization mass spectrometry
    • Smirnov, I.P., Hall, L.R., Ross, P.L. & Haff, L.A. Application of DNA-binding polymers for preparation of DNA for analysis by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun. Mass Spectrom. 15, 1427-1432 (2001).
    • (2001) Rapid Commun. Mass Spectrom , vol.15 , pp. 1427-1432
    • Smirnov, I.P.1    Hall, L.R.2    Ross, P.L.3    Haff, L.A.4
  • 33
    • 0000184162 scopus 로고    scopus 로고
    • MALDI on a chip: Analysis of arrays of low-femtomole to subfemtomote quantities of synthetic oligonucleotides and DNA diagnostic products by a piezoelectric pipet
    • Little, D.P. et al. MALDI on a chip: Analysis of arrays of low-femtomole to subfemtomote quantities of synthetic oligonucleotides and DNA diagnostic products by a piezoelectric pipet. Anal. Chem. 69, 4540-4546 (1997).
    • (1997) Anal. Chem , vol.69 , pp. 4540-4546
    • Little, D.P.1
  • 34
    • 0035489785 scopus 로고    scopus 로고
    • Sugar additives for MALDI matrices improve signal allowing the smallest nucleotide change (A:T) in a DNA sequence to be resolved
    • egi
    • Shahgholi, M., Garcia, B.A., Chiu, N.H., Heaney, P.J. & Tang, K. Sugar additives for MALDI matrices improve signal allowing the smallest nucleotide change (A:T) in a DNA sequence to be resolved. Nucleic Acids Res. 29, egi (2001).
    • (2001) Nucleic Acids Res , vol.29
    • Shahgholi, M.1    Garcia, B.A.2    Chiu, N.H.3    Heaney, P.J.4    Tang, K.5
  • 35
    • 0027551428 scopus 로고
    • Matrix-assistedlLaser desorption time-of-flight mass spectrometry of oligonucleotides using 3-hydroxypicolinic acid as an ultraviolet-sensitive matrix
    • Wu, K.J., Steding, A. & Becker, C.H. Matrix-assistedlLaser desorption time-of-flight mass spectrometry of oligonucleotides using 3-hydroxypicolinic acid as an ultraviolet-sensitive matrix. Rapid Commun. Mass Spectrom. 7, 142-146 (1993).
    • (1993) Rapid Commun. Mass Spectrom , vol.7 , pp. 142-146
    • Wu, K.J.1    Steding, A.2    Becker, C.H.3
  • 36
    • 0035356943 scopus 로고    scopus 로고
    • Improving spot homogeneity by using polymer substrates in matrix-assisted laser desorption/ionization mass spectrometry of oligonucleotides
    • Kim, Y., Hurst, G.B., Doktycz, M.J. & Buchanan, M.V. Improving spot homogeneity by using polymer substrates in matrix-assisted laser desorption/ionization mass spectrometry of oligonucleotides. Anal. Chem. 73, 2617-2624 (2001).
    • (2001) Anal. Chem , vol.73 , pp. 2617-2624
    • Kim, Y.1    Hurst, G.B.2    Doktycz, M.J.3    Buchanan, M.V.4
  • 37
    • 0033971125 scopus 로고    scopus 로고
    • Improved amplification of genital human papillomaviruses
    • Gravitt, P.E. et al. Improved amplification of genital human papillomaviruses. J. Clin. Microbiol. 38, 357-361 (2000).
    • (2000) J. Clin. Microbiol , vol.38 , pp. 357-361
    • Gravitt, P.E.1
  • 38
    • 0024973417 scopus 로고
    • Avoiding false positives with PCR
    • Kwok, S. & Higuchi, R. Avoiding false positives with PCR. Nature 339, 237-238 (1989).
    • (1989) Nature , vol.339 , pp. 237-238
    • Kwok, S.1    Higuchi, R.2
  • 39
    • 0037165728 scopus 로고    scopus 로고
    • Consensus Guidelines for the management of women with cervical cytological abnormalities
    • Wright, T.C. et al. 2001 Consensus Guidelines for the management of women with cervical cytological abnormalities. JAMA 287, 2120-2129 (2002).
    • (2001) JAMA , vol.287 , pp. 2120-2129
    • Wright, T.C.1
  • 40
    • 33947250416 scopus 로고    scopus 로고
    • Evaluation of combined general primer-mediated PCR sequencing and type-specific PCR strategies for determination of human papillomavirus genotypes in cervical cell specimens
    • Fontaine, V. et al. Evaluation of combined general primer-mediated PCR sequencing and type-specific PCR strategies for determination of human papillomavirus genotypes in cervical cell specimens. J. Clin. Microbiol. 45, 928-934 (2007).
    • (2007) J. Clin. Microbiol , vol.45 , pp. 928-934
    • Fontaine, V.1


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